Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:59:47 (1443415): wrapper (7.7.26015): starting
02:59:47 (1443415): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 02:59:47] Arguments: --nthreads 12
[2025-11-25 02:59:47] Threads: 12
[2025-11-25 02:59:47] Checking for CVMFS
[2025-11-25 02:59:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:59:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:59:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:59:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:59:48] 2.9.2.0 369954 6681 70572 153265 1 81 3443423 36864000 0 130560 0 3343686 99.984 215863 6089 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 02:59:48] CVMFS is ok
[2025-11-25 02:59:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:59:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:59:48] Further information can be found at the LHC@home message board.
[2025-11-25 02:59:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:59:48] Checking for apptainer binary...
[2025-11-25 02:59:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:59:48] Running /usr/bin/apptainer --version
[2025-11-25 02:59:48] apptainer version 1.4.2-2.1
[2025-11-25 02:59:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:59:48] cosA131a
[2025-11-25 02:59:48] apptainer works
[2025-11-25 02:59:48] Set ATHENA_PROC_NUMBER=12
[2025-11-25 02:59:48] Set ATHENA_CORE_NUMBER=12
[2025-11-25 02:59:48] Starting ATLAS job with PandaID=6895355113
[2025-11-25 02:59:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:31:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:31:31] 2025-11-25 06:30:51,200 | INFO     | PID=1447145 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 07:31:31] 2025-11-25 06:30:51,713 | INFO     | monitor loop #1207: job 0:6895355113 is in state 'finished'
[2025-11-25 07:31:31] 2025-11-25 06:30:51,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:31:31] 2025-11-25 06:30:52,200 | INFO     | time since job start (16253s) is within the limit (172800.0s)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,671 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 07:31:31] 2025-11-25 06:30:53,672 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4300.337416666666
[2025-11-25 07:31:31] 2025-11-25 06:30:53,673 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895355113/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,674 | INFO     | extracted standard info from prmon json
[2025-11-25 07:31:31] 2025-11-25 06:30:53,674 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:31:31] 2025-11-25 06:30:53,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:31:31] 2025-11-25 06:30:53,676 | INFO     | fitting pss+swap vs Time
[2025-11-25 07:31:31] 2025-11-25 06:30:53,676 | INFO     | sum of square deviations: 5836029090.781934
[2025-11-25 07:31:31] 2025-11-25 06:30:53,677 | INFO     | sum of deviations: 329306993265.4061
[2025-11-25 07:31:31] 2025-11-25 06:30:53,677 | INFO     | mean x: 1764044105.6466165
[2025-11-25 07:31:31] 2025-11-25 06:30:53,677 | INFO     | mean y: 3571131.4511278197
[2025-11-25 07:31:31] 2025-11-25 06:30:53,677 | INFO     | intersect: -99535353603.45229
[2025-11-25 07:31:31] 2025-11-25 06:30:53,677 | INFO     | chi2: 5.188408911449462
[2025-11-25 07:31:31] 2025-11-25 06:30:53,677 | INFO     | sum of square deviations: 5513086093.172417
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | sum of deviations: 394573118253.5403
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | mean x: 1764043953.1494253
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | mean y: 3601740.601532567
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | intersect: -126249518846.88115
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | chi2: 3.4933775315909354
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | current chi2=3.4933775315909354 (change=32.669579610774996 %)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,678 | INFO     | sum of square deviations: 5202282858.058594
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | sum of deviations: 381059122269.57043
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | mean x: 1764043800.6523438
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | mean y: 3595110.79296875
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | intersect: -129209867644.38583
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | chi2: 3.486744518937848
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | current chi2=3.486744518937848 (change=0.1898739140875674 %)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | right removable region: 255
[2025-11-25 07:31:31] 2025-11-25 06:30:53,679 | INFO     | sum of square deviations: 5513062303.172418
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | sum of deviations: 218157623271.0346
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | mean x: 1764044258.1494253
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | mean y: 3623548.563218391
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | intersect: -69801446943.99101
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | chi2: 2.3002694882114887
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | current chi2=2.3002694882114887 (change=55.66522362693126 %)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,680 | INFO     | sum of square deviations: 5202235278.058594
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | sum of deviations: 172193461178.33307
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | mean x: 1764044410.6523438
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | mean y: 3645986.36328125
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | intersect: -58386045464.86187
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | chi2: 1.7912966031643884
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | current chi2=1.7912966031643884 (change=22.12666331729845 %)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | left removable region: 20
[2025-11-25 07:31:31] 2025-11-25 06:30:53,681 | INFO     | sum of square deviations: 4024146729.855306
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | sum of deviations: 188869101435.6638
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | mean x: 1764044380.1617022
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | mean y: 3694150.140425532
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | intersect: -82789876596.65808
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | chi2: 0.03496885555661806
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | current memory leak: 46.93 B/s (using 235 data points, chi2=0.03)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | could have reported an average CPU frequency of 3843 MHz (12 samples)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | ..............................
[2025-11-25 07:31:31] 2025-11-25 06:30:53,682 | INFO     | . Timing measurements:
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . get job = 0 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . initial setup = 1 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . payload setup = 5 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . stage-in = 0 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . payload execution = 16219 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . stage-out = 1 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | . log creation = 0 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,683 | INFO     | ..............................
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | 
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | job summary report
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | --------------------------------------------------
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | PanDA job id: 6895355113
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | task id: 47556149
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | errors: (none)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,739 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | pilot state: finished 
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | transexitcode: 0
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | exeerrorcode: 0
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | exeerrordiag: 
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | exitcode: 0
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | exitmsg: OK
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | cpuconsumptiontime: 186377 s
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | nevents: 1000
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | neventsw: 0
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | pid: 1453618
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | pgrp: 1453618
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | corecount: 12
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | event service: False
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | sizes: {0: 2284262, 2: 2284524, 10: 2284552, 16228: 2317329, 16229: 2326329, 16232: 2326385, 16239: 2326759}
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | --------------------------------------------------
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | 
[2025-11-25 07:31:31] 2025-11-25 06:30:53,740 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-25 07:31:31] 2025-11-25 06:30:53,752 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,752 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | job 6895355113 has completed (purged errors)
[2025-11-25 07:31:31] 2025-11-25 06:30:53,753 | INFO     | overall cleanup function is called
[2025-11-25 07:31:31] 2025-11-25 06:30:54,764 | INFO     | --- collectZombieJob: --- 10, [1453618]
[2025-11-25 07:31:31] 2025-11-25 06:30:54,764 | INFO     | zombie collector waiting for pid 1453618
[2025-11-25 07:31:31] 2025-11-25 06:30:54,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 07:31:31] 2025-11-25 06:30:54,766 | INFO     | collected zombie processes
[2025-11-25 07:31:31] 2025-11-25 06:30:54,766 | INFO     | will attempt to kill all subprocesses of pid=1453618
[2025-11-25 07:31:31] 2025-11-25 06:30:54,805 | INFO     | process IDs to be killed: [1453618] (in reverse order)
[2025-11-25 07:31:31] 2025-11-25 06:30:54,831 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:31:31] 2025-11-25 06:30:54,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:31:31] 2025-11-25 06:30:54,832 | INFO     | did not find any defunct processes belonging to 1453618
[2025-11-25 07:31:31] 2025-11-25 06:30:54,833 | INFO     | did not find any defunct processes belonging to 1453618
[2025-11-25 07:31:31] 2025-11-25 06:30:54,833 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:31:31] 2025-11-25 06:30:54,834 | INFO     | ready for new job
[2025-11-25 07:31:31] 2025-11-25 06:30:54,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:31:31] 2025-11-25 06:30:54,834 | INFO     | ***************************************
[2025-11-25 07:31:31] 2025-11-25 06:30:54,834 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:31:31] 2025-11-25 06:30:54,835 | INFO     | ***************************************
[2025-11-25 07:31:31] 2025-11-25 06:30:54,835 | INFO     | 
[2025-11-25 07:31:31] 2025-11-25 06:30:54,835 | INFO     | architecture information:
[2025-11-25 07:31:31] 2025-11-25 06:30:54,835 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:31:31] 2025-11-25 06:30:54,846 | INFO     | cat /etc/os-release:
[2025-11-25 07:31:31] NAME="CentOS Linux"
[2025-11-25 07:31:31] VERSION="7 (Core)"
[2025-11-25 07:31:31] ID="centos"
[2025-11-25 07:31:31] ID_LIKE="rhel fedora"
[2025-11-25 07:31:31] VERSION_ID="7"
[2025-11-25 07:31:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:31:31] ANSI_COLOR="0;31"
[2025-11-25 07:31:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:31:31] HOME_URL="https://www.centos.org/"
[2025-11-25 07:31:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:31:31] 
[2025-11-25 07:31:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:31:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:31:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:31:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:31:31] 
[2025-11-25 07:31:31] 2025-11-25 06:30:54,846 | INFO     | ***************************************
[2025-11-25 07:31:31] 2025-11-25 06:30:55,349 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | INFO     | sufficient remaining disk space (858043449344 B)
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | INFO     | update_server=False
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:31:31] 2025-11-25 06:30:55,363 | INFO     | aborting loop
[2025-11-25 07:31:31] 2025-11-25 06:30:56,265 | INFO     | all data control threads have been joined
[2025-11-25 07:31:31] 2025-11-25 06:30:56,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:31:31] 2025-11-25 06:30:56,369 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:56,370 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:56,371 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:56,431 | INFO     | all payload control threads have been joined
[2025-11-25 07:31:31] 2025-11-25 06:30:56,581 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:56,679 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:56,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:31:31] 2025-11-25 06:30:56,829 | INFO     | all job control threads have been joined
[2025-11-25 07:31:31] 2025-11-25 06:30:57,181 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,226 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,271 | INFO     | [data] control thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,413 | INFO     | [job] validate thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,436 | INFO     | [payload] control thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,512 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,713 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:57,835 | INFO     | [job] control thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:30:58,272 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:31:00,797 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:31:31] 2025-11-25 06:31:25,317 | INFO     | PID=1447145 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 07:31:31] 2025-11-25 06:31:25,317 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:31:31] 2025-11-25 06:31:25,317 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:31:31] 2025-11-25 06:31:25,317 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:31:31] 2025-11-25 06:31:26,334 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:31:31] 2025-11-25 06:31:26,416 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077063960384)>', '<ExcThread(monitor, started 140076063389440)>']
[2025-11-25 07:31:31] 2025-11-25 06:31:27,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:31:31] 2025-11-25 06:31:27,329 | INFO     | [monitor] control thread has ended
[2025-11-25 07:31:31] 2025-11-25 06:31:31,442 | INFO     | all workflow threads have been joined
[2025-11-25 07:31:31] 2025-11-25 06:31:31,443 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:31:31] 2025-11-25 06:31:31,443 | INFO     | traces error code: 0
[2025-11-25 07:31:31] 2025-11-25 06:31:31,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:31:31] 2025-11-25 06:31:31,492 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:31:31] 2025-11-25 06:31:31,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:31:31] 2025-11-25 06:31:31,498 [wrapper] pilotpid: 1447145
[2025-11-25 07:31:31] 2025-11-25 06:31:31,501 [wrapper] Pilot exit status: 0
[2025-11-25 07:31:31] 2025-11-25 06:31:31,508 [wrapper] pandaids: 6895355113
[2025-11-25 07:31:31] 2025-11-25 06:31:31,525 [wrapper] cleanup supervisor_pilot 1484708 1447146
[2025-11-25 07:31:31] 2025-11-25 06:31:31,528 [wrapper] Test setup, not cleaning
[2025-11-25 07:31:31] 2025-11-25 06:31:31,531 [wrapper] apfmon messages muted
[2025-11-25 07:31:31] 2025-11-25 06:31:31,533 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:31:31] 2025-11-25 06:31:31,536 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:31:31]  *** Error codes and diagnostics ***
[2025-11-25 07:31:31]     "exeErrorCode": 0,
[2025-11-25 07:31:31]     "exeErrorDiag": "",
[2025-11-25 07:31:31]     "pilotErrorCode": 0,
[2025-11-25 07:31:31]     "pilotErrorDiag": "",
[2025-11-25 07:31:31]  *** Listing of results directory ***
[2025-11-25 07:31:31] total 1296504
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:47 pilot3.tar.gz
[2025-11-25 07:31:31] -rwx------ 1 boinc boinc     36292 Nov 23 06:58 runpilot2-wrapper.sh
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:58 queuedata.json
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc       100 Nov 25 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:31:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 02:59 run_atlas
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc       105 Nov 25 02:59 job.xml
[2025-11-25 07:31:31] -rw-r--r-- 2 boinc boinc 407263094 Nov 25 02:59 EVNT.47483658._001143.pool.root.1
[2025-11-25 07:31:31] drwxrwx--x 2 boinc boinc      4096 Nov 25 02:59 shared
[2025-11-25 07:31:31] -rw-r--r-- 2 boinc boinc    590100 Nov 25 02:59 input.tar.gz
[2025-11-25 07:31:31] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:59 start_atlas.sh
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:59 boinc_setup_complete
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc      6272 Nov 25 02:59 init_data.xml
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:59 boinc_lockfile
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc      2785 Nov 25 02:59 pandaJob.out
[2025-11-25 07:31:31] -rw------- 1 boinc boinc    991801 Nov 25 02:59 agis_schedconf.cvmfs.json
[2025-11-25 07:31:31] drwx------ 5 boinc boinc      4096 Nov 25 02:59 pilot3
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc       532 Nov 25 07:25 boinc_task_state.xml
[2025-11-25 07:31:31] -rw------- 1 boinc boinc 907811106 Nov 25 07:30 HITS.47556149._001298.pool.root.1
[2025-11-25 07:31:31] -rw------- 1 boinc boinc      1044 Nov 25 07:30 memory_monitor_summary.json
[2025-11-25 07:31:31] -rw------- 1 boinc boinc   1516227 Nov 25 07:30 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:31:31] -rw------- 1 boinc boinc   2019965 Nov 25 07:30 log.47556149._001298.job.log.tgz.1
[2025-11-25 07:31:31] -rw------- 1 boinc boinc        95 Nov 25 07:30 pilot_heartbeat.json
[2025-11-25 07:31:31] -rw------- 1 boinc boinc      8585 Nov 25 07:30 heartbeat.json
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc      8192 Nov 25 07:31 boinc_mmap_file
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc        29 Nov 25 07:31 wrapper_checkpoint.txt
[2025-11-25 07:31:31] -rw------- 1 boinc boinc      4752 Nov 25 07:31 pilotlog.txt
[2025-11-25 07:31:31] -rw------- 1 boinc boinc   2295330 Nov 25 07:31 log.47556149._001298.job.log.1
[2025-11-25 07:31:31] -rw------- 1 boinc boinc       353 Nov 25 07:31 output.list
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc       620 Nov 25 07:31 runtime_log
[2025-11-25 07:31:31] -rw------- 1 boinc boinc   4331520 Nov 25 07:31 result.tar.gz
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc      8910 Nov 25 07:31 runtime_log.err
[2025-11-25 07:31:31] -rw------- 1 boinc boinc       670 Nov 25 07:31 RuSNDmNIIh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6gKKDm7Mui7n.diag
[2025-11-25 07:31:31] -rw-r--r-- 1 boinc boinc     21433 Nov 25 07:31 stderr.txt
[2025-11-25 07:31:31] HITS file was successfully produced:
[2025-11-25 07:31:31] -rw------- 1 boinc boinc 907811106 Nov 25 07:30 shared/HITS.pool.root.1
[2025-11-25 07:31:31]  *** Contents of shared directory: ***
[2025-11-25 07:31:31] total 1289088
[2025-11-25 07:31:31] -rw-r--r-- 2 boinc boinc 407263094 Nov 25 02:59 ATLAS.root_0
[2025-11-25 07:31:31] -rw-r--r-- 2 boinc boinc    590100 Nov 25 02:59 input.tar.gz
[2025-11-25 07:31:31] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:59 start_atlas.sh
[2025-11-25 07:31:31] -rw------- 1 boinc boinc 907811106 Nov 25 07:30 HITS.pool.root.1
[2025-11-25 07:31:31] -rw------- 1 boinc boinc   4331520 Nov 25 07:31 result.tar.gz
07:31:33 (1443415): run_atlas exited; CPU time 186332.408942
07:31:33 (1443415): called boinc_finish(0)

</stderr_txt>
]]>

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