Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:18 (2272832): wrapper (7.7.26015): starting
05:32:18 (2272832): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 05:32:18] Arguments: --nthreads 3
[2025-11-27 05:32:18] Threads: 3
[2025-11-27 05:32:18] Checking for CVMFS
[2025-11-27 05:32:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:32:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:32:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:32:18] 2.9.2.0 2059758 12141 92440 153347 0 81 19366269 36864001 0 130560 1 4496181 99.935 600765 726 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 05:32:18] CVMFS is ok
[2025-11-27 05:32:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:32:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:32:18] Further information can be found at the LHC@home message board.
[2025-11-27 05:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:32:18] Checking for apptainer binary...
[2025-11-27 05:32:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:32:18] Running /usr/bin/apptainer --version
[2025-11-27 05:32:18] apptainer version 1.4.1-1.1
[2025-11-27 05:32:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:32:18] atlasA303
[2025-11-27 05:32:18] apptainer works
[2025-11-27 05:32:18] Set ATHENA_PROC_NUMBER=3
[2025-11-27 05:32:18] Set ATHENA_CORE_NUMBER=3
[2025-11-27 05:32:18] Starting ATLAS job with PandaID=6894253391
[2025-11-27 05:32:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:36:03]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | job 6894253391 has completed (purged errors)
[2025-11-27 13:36:03] 2025-11-27 12:35:26,869 | INFO     | overall cleanup function is called
[2025-11-27 13:36:03] 2025-11-27 12:35:27,875 | INFO     | --- collectZombieJob: --- 10, [2283084]
[2025-11-27 13:36:03] 2025-11-27 12:35:27,875 | INFO     | zombie collector waiting for pid 2283084
[2025-11-27 13:36:03] 2025-11-27 12:35:27,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:36:03] 2025-11-27 12:35:27,875 | INFO     | collected zombie processes
[2025-11-27 13:36:03] 2025-11-27 12:35:27,875 | INFO     | will attempt to kill all subprocesses of pid=2283084
[2025-11-27 13:36:03] 2025-11-27 12:35:27,918 | INFO     | process IDs to be killed: [2283084] (in reverse order)
[2025-11-27 13:36:03] 2025-11-27 12:35:27,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:36:03] 2025-11-27 12:35:27,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:36:03] 2025-11-27 12:35:27,944 | INFO     | did not find any defunct processes belonging to 2283084
[2025-11-27 13:36:03] 2025-11-27 12:35:27,945 | INFO     | did not find any defunct processes belonging to 2283084
[2025-11-27 13:36:03] 2025-11-27 12:35:27,945 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:36:03] 2025-11-27 12:35:27,945 | INFO     | ready for new job
[2025-11-27 13:36:03] 2025-11-27 12:35:27,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:36:03] 2025-11-27 12:35:27,946 | INFO     | ***************************************
[2025-11-27 13:36:03] 2025-11-27 12:35:27,947 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:36:03] 2025-11-27 12:35:27,947 | INFO     | ***************************************
[2025-11-27 13:36:03] 2025-11-27 12:35:27,947 | INFO     | 
[2025-11-27 13:36:03] 2025-11-27 12:35:27,947 | INFO     | architecture information:
[2025-11-27 13:36:03] 2025-11-27 12:35:27,947 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:36:03] 2025-11-27 12:35:27,956 | INFO     | cat /etc/os-release:
[2025-11-27 13:36:03] NAME="CentOS Linux"
[2025-11-27 13:36:03] VERSION="7 (Core)"
[2025-11-27 13:36:03] ID="centos"
[2025-11-27 13:36:03] ID_LIKE="rhel fedora"
[2025-11-27 13:36:03] VERSION_ID="7"
[2025-11-27 13:36:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:36:03] ANSI_COLOR="0;31"
[2025-11-27 13:36:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:36:03] HOME_URL="https://www.centos.org/"
[2025-11-27 13:36:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:36:03] 
[2025-11-27 13:36:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:36:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:36:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:36:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:36:03] 
[2025-11-27 13:36:03] 2025-11-27 12:35:27,956 | INFO     | ***************************************
[2025-11-27 13:36:03] 2025-11-27 12:35:28,459 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 13:36:03] 2025-11-27 12:35:28,471 | INFO     | sufficient remaining disk space (382808883200 B)
[2025-11-27 13:36:03] 2025-11-27 12:35:28,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:36:03] 2025-11-27 12:35:28,471 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:36:03] 2025-11-27 12:35:28,471 | INFO     | update_server=False
[2025-11-27 13:36:03] 2025-11-27 12:35:28,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:36:03] 2025-11-27 12:35:28,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:36:03] 2025-11-27 12:35:28,752 | INFO     | all job control threads have been joined
[2025-11-27 13:36:03] 2025-11-27 12:35:28,798 | INFO     | all payload control threads have been joined
[2025-11-27 13:36:03] 2025-11-27 12:35:28,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:36:03] 2025-11-27 12:35:28,930 | INFO     | aborting loop
[2025-11-27 13:36:03] 2025-11-27 12:35:29,334 | INFO     | all data control threads have been joined
[2025-11-27 13:36:03] 2025-11-27 12:35:29,476 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:29,477 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:29,495 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:29,733 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:29,758 | INFO     | [job] control thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:29,804 | INFO     | [payload] control thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:29,935 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,092 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,100 | INFO     | [job] validate thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,301 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,303 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,340 | INFO     | [data] control thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,478 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:30,698 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:32,478 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:39,207 | INFO     | job.realtimelogging is not enabled
[2025-11-27 13:36:03] 2025-11-27 12:35:40,213 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:36:03] 2025-11-27 12:35:56,952 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:36:03] 2025-11-27 12:35:58,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145731594048)>', '<ExcThread(monitor, started 140145110017792)>']
[2025-11-27 13:36:03] 2025-11-27 12:35:58,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:36:03] 2025-11-27 12:35:58,618 | INFO     | [monitor] control thread has ended
[2025-11-27 13:36:03] 2025-11-27 12:36:03,135 | INFO     | all workflow threads have been joined
[2025-11-27 13:36:03] 2025-11-27 12:36:03,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:36:03] 2025-11-27 12:36:03,136 | INFO     | traces error code: 0
[2025-11-27 13:36:03] 2025-11-27 12:36:03,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:36:03] 2025-11-27 12:36:03,187 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:36:03] 2025-11-27 12:36:03,189 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:36:03] 2025-11-27 12:36:03,191 [wrapper] pilotpid: 2276573
[2025-11-27 13:36:03] 2025-11-27 12:36:03,194 [wrapper] Pilot exit status: 0
[2025-11-27 13:36:03] 2025-11-27 12:36:03,201 [wrapper] pandaids: 6894253391
[2025-11-27 13:36:03] 2025-11-27 12:36:03,217 [wrapper] cleanup supervisor_pilot 2444865 2276574
[2025-11-27 13:36:03] 2025-11-27 12:36:03,219 [wrapper] Test setup, not cleaning
[2025-11-27 13:36:03] 2025-11-27 12:36:03,222 [wrapper] apfmon messages muted
[2025-11-27 13:36:03] 2025-11-27 12:36:03,224 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:36:03] 2025-11-27 12:36:03,226 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:36:03]  *** Error codes and diagnostics ***
[2025-11-27 13:36:03]     "exeErrorCode": 0,
[2025-11-27 13:36:03]     "exeErrorDiag": "",
[2025-11-27 13:36:03]     "pilotErrorCode": 0,
[2025-11-27 13:36:03]     "pilotErrorDiag": "",
[2025-11-27 13:36:03]  *** Listing of results directory ***
[2025-11-27 13:36:03] total 1310048
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc    576529 Nov 21 03:10 pilot3.tar.gz
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc      5112 Nov 21 03:41 queuedata.json
[2025-11-27 13:36:03] -rwx------ 1 boinc boinc     36292 Nov 21 03:43 runpilot2-wrapper.sh
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc       100 Nov 27 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:36:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 05:32 run_atlas
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc       105 Nov 27 05:32 job.xml
[2025-11-27 13:36:03] -rw-r--r-- 2 boinc boinc 412107002 Nov 27 05:32 EVNT.47493127._002131.pool.root.1
[2025-11-27 13:36:03] -rw-r--r-- 2 boinc boinc    590098 Nov 27 05:32 input.tar.gz
[2025-11-27 13:36:03] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:32 start_atlas.sh
[2025-11-27 13:36:03] drwxrwx--x 2 boinc boinc      4096 Nov 27 05:32 shared
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:32 boinc_setup_complete
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc      6448 Nov 27 05:32 init_data.xml
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:32 boinc_lockfile
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc      2786 Nov 27 05:32 pandaJob.out
[2025-11-27 13:36:03] -rw------- 1 boinc boinc    991570 Nov 27 05:32 agis_schedconf.cvmfs.json
[2025-11-27 13:36:03] drwx------ 5 boinc boinc      4096 Nov 27 05:32 pilot3
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc       531 Nov 27 13:31 boinc_task_state.xml
[2025-11-27 13:36:03] -rw------- 1 boinc boinc        95 Nov 27 13:34 pilot_heartbeat.json
[2025-11-27 13:36:03] -rw------- 1 boinc boinc 914991920 Nov 27 13:35 HITS.47533967._001022.pool.root.1
[2025-11-27 13:36:03] -rw------- 1 boinc boinc      1022 Nov 27 13:35 memory_monitor_summary.json
[2025-11-27 13:36:03] -rw------- 1 boinc boinc   1516240 Nov 27 13:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:36:03] -rw------- 1 boinc boinc   1159768 Nov 27 13:35 log.47533967._001022.job.log.tgz.1
[2025-11-27 13:36:03] -rw------- 1 boinc boinc      8563 Nov 27 13:35 heartbeat.json
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc      8192 Nov 27 13:35 boinc_mmap_file
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc        28 Nov 27 13:35 wrapper_checkpoint.txt
[2025-11-27 13:36:03] -rw------- 1 boinc boinc      4628 Nov 27 13:36 pilotlog.txt
[2025-11-27 13:36:03] -rw------- 1 boinc boinc   4078783 Nov 27 13:36 log.47533967._001022.job.log.1
[2025-11-27 13:36:03] -rw------- 1 boinc boinc       353 Nov 27 13:36 output.list
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc       620 Nov 27 13:36 runtime_log
[2025-11-27 13:36:03] -rw------- 1 boinc boinc   5263360 Nov 27 13:36 result.tar.gz
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc      8913 Nov 27 13:36 runtime_log.err
[2025-11-27 13:36:03] -rw------- 1 boinc boinc       668 Nov 27 13:36 rIxKDmUIWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2GHKDmXelXsn.diag
[2025-11-27 13:36:03] -rw-r--r-- 1 boinc boinc     11967 Nov 27 13:36 stderr.txt
[2025-11-27 13:36:03] HITS file was successfully produced:
[2025-11-27 13:36:03] -rw------- 1 boinc boinc 914991920 Nov 27 13:35 shared/HITS.pool.root.1
[2025-11-27 13:36:03]  *** Contents of shared directory: ***
[2025-11-27 13:36:03] total 1301744
[2025-11-27 13:36:03] -rw-r--r-- 2 boinc boinc 412107002 Nov 27 05:32 ATLAS.root_0
[2025-11-27 13:36:03] -rw-r--r-- 2 boinc boinc    590098 Nov 27 05:32 input.tar.gz
[2025-11-27 13:36:03] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:32 start_atlas.sh
[2025-11-27 13:36:03] -rw------- 1 boinc boinc 914991920 Nov 27 13:35 HITS.pool.root.1
[2025-11-27 13:36:03] -rw------- 1 boinc boinc   5263360 Nov 27 13:36 result.tar.gz
13:36:04 (2272832): run_atlas exited; CPU time 85519.911390
13:36:04 (2272832): called boinc_finish(0)

</stderr_txt>
]]>

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