Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:56:49 (1958024): wrapper (7.7.26015): starting
13:56:49 (1958024): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 13:56:49] Arguments: --nthreads 3
[2025-11-24 13:56:49] Threads: 3
[2025-11-24 13:56:49] Checking for CVMFS
[2025-11-24 13:56:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:56:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:56:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:56:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:56:50] 2.9.2.0 154488 791 67480 153246 2 128 35014973 36864000 0 130560 0 5378567 99.999 25219 12072 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 13:56:50] CVMFS is ok
[2025-11-24 13:56:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:56:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:56:50] Further information can be found at the LHC@home message board.
[2025-11-24 13:56:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:56:50] Checking for apptainer binary...
[2025-11-24 13:56:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:56:50] Running /usr/bin/apptainer --version
[2025-11-24 13:56:50] apptainer version 1.4.1-1.1
[2025-11-24 13:56:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:56:50] thA335
[2025-11-24 13:56:50] apptainer works
[2025-11-24 13:56:50] Set ATHENA_PROC_NUMBER=3
[2025-11-24 13:56:50] Set ATHENA_CORE_NUMBER=3
[2025-11-24 13:56:50] Starting ATLAS job with PandaID=6895364686
[2025-11-24 13:56:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:01:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:01:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:01:08] HOME_URL="https://www.centos.org/"
[2025-11-24 14:01:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:01:08] 
[2025-11-24 14:01:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:01:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:01:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:01:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:01:08] 
[2025-11-24 14:01:08] 2025-11-24 13:00:20,222 | INFO     | ***************************************
[2025-11-24 14:01:08] 2025-11-24 13:00:20,726 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 14:01:08] 2025-11-24 13:00:20,740 | INFO     | sufficient remaining disk space (827019231232 B)
[2025-11-24 14:01:08] 2025-11-24 13:00:20,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:01:08] 2025-11-24 13:00:20,740 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:01:08] 2025-11-24 13:00:20,740 | INFO     | update_server=False
[2025-11-24 14:01:08] 2025-11-24 13:00:20,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:01:08] 2025-11-24 13:00:20,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:01:08] 2025-11-24 13:00:21,146 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:01:08] 2025-11-24 13:00:21,146 | INFO     | aborting loop
[2025-11-24 14:01:08] 2025-11-24 13:00:21,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:01:08] 2025-11-24 13:00:21,638 | INFO     | all job control threads have been joined
[2025-11-24 14:01:08] 2025-11-24 13:00:21,746 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:21,747 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:21,757 | INFO     | all data control threads have been joined
[2025-11-24 14:01:08] 2025-11-24 13:00:21,784 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,014 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,061 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,138 | INFO     | all payload control threads have been joined
[2025-11-24 14:01:08] 2025-11-24 13:00:22,149 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,233 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,644 | INFO     | [job] control thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,761 | INFO     | [data] control thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:22,912 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:23,094 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:23,144 | INFO     | [payload] control thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:23,145 | INFO     | [job] validate thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:23,234 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:23,544 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:23,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:01:08] 2025-11-24 13:00:27,852 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:01:08] 2025-11-24 13:00:50,900 | INFO     | PID=1961758 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:01:08] 2025-11-24 13:00:50,900 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:01:08] 2025-11-24 13:00:50,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:01:08] 2025-11-24 13:00:50,900 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:01:08] 2025-11-24 13:01:01,968 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:01:08] 2025-11-24 13:01:03,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140092530599744)>', '<ExcThread(monitor, started 140091892688640)>']
[2025-11-24 14:01:08] 2025-11-24 13:01:03,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:01:08] 2025-11-24 13:01:03,970 | INFO     | [monitor] control thread has ended
[2025-11-24 14:01:08] 2025-11-24 13:01:08,699 | INFO     | all workflow threads have been joined
[2025-11-24 14:01:08] 2025-11-24 13:01:08,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:01:08] 2025-11-24 13:01:08,700 | INFO     | traces error code: 0
[2025-11-24 14:01:08] 2025-11-24 13:01:08,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:01:08] 2025-11-24 13:01:08,747 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:01:08] 2025-11-24 13:01:08,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:01:08] 2025-11-24 13:01:08,753 [wrapper] pilotpid: 1961758
[2025-11-24 14:01:08] 2025-11-24 13:01:08,756 [wrapper] Pilot exit status: 0
[2025-11-24 14:01:08] 2025-11-24 13:01:08,763 [wrapper] pandaids: 6895364686
[2025-11-24 14:01:08] 2025-11-24 13:01:08,780 [wrapper] cleanup supervisor_pilot 1961764 1961759
[2025-11-24 14:01:08] 2025-11-24 13:01:08,783 [wrapper] Test setup, not cleaning
[2025-11-24 14:01:08] 2025-11-24 13:01:08,785 [wrapper] apfmon messages muted
[2025-11-24 14:01:08] 2025-11-24 13:01:08,788 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:01:08] 2025-11-24 13:01:08,790 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:01:08]  *** Error codes and diagnostics ***
[2025-11-24 14:01:08]     "exeErrorCode": 65,
[2025-11-24 14:01:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 14:01:08]     "pilotErrorCode": 1305,
[2025-11-24 14:01:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 14:01:08]  *** Listing of results directory ***
[2025-11-24 14:01:08] total 404736
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc    576529 Nov 23 17:03 pilot3.tar.gz
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc      5112 Nov 23 17:52 queuedata.json
[2025-11-24 14:01:08] -rwx------ 1 boinc boinc     36292 Nov 23 17:54 runpilot2-wrapper.sh
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc       100 Nov 24 13:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:01:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 13:56 run_atlas
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc       105 Nov 24 13:56 job.xml
[2025-11-24 14:01:08] -rw-r--r-- 2 boinc boinc 410260044 Nov 24 13:56 EVNT.47483658._001176.pool.root.1
[2025-11-24 14:01:08] -rw-r--r-- 2 boinc boinc    590105 Nov 24 13:56 input.tar.gz
[2025-11-24 14:01:08] -rw-r--r-- 2 boinc boinc     15847 Nov 24 13:56 start_atlas.sh
[2025-11-24 14:01:08] drwxrwx--x 2 boinc boinc      4096 Nov 24 13:56 shared
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc         0 Nov 24 13:56 boinc_setup_complete
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc      6195 Nov 24 13:56 init_data.xml
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc         0 Nov 24 13:56 boinc_lockfile
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc      2785 Nov 24 13:56 pandaJob.out
[2025-11-24 14:01:08] -rw------- 1 boinc boinc    988279 Nov 24 13:57 agis_schedconf.cvmfs.json
[2025-11-24 14:01:08] -rw------- 1 boinc boinc   1516227 Nov 24 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:01:08] drwx------ 5 boinc boinc      4096 Nov 24 13:57 pilot3
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc       522 Nov 24 13:57 boinc_task_state.xml
[2025-11-24 14:01:08] -rw------- 1 boinc boinc       962 Nov 24 13:58 memory_monitor_summary.json
[2025-11-24 14:01:08] -rw------- 1 boinc boinc     55819 Nov 24 13:58 log.47556149._001625.job.log.tgz.1
[2025-11-24 14:01:08] -rw------- 1 boinc boinc        95 Nov 24 14:00 pilot_heartbeat.json
[2025-11-24 14:01:08] -rw------- 1 boinc boinc      8397 Nov 24 14:00 heartbeat.json
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc      8192 Nov 24 14:00 boinc_mmap_file
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc        22 Nov 24 14:00 wrapper_checkpoint.txt
[2025-11-24 14:01:08] -rw------- 1 boinc boinc      4752 Nov 24 14:01 pilotlog.txt
[2025-11-24 14:01:08] -rw------- 1 boinc boinc     92760 Nov 24 14:01 log.47556149._001625.job.log.1
[2025-11-24 14:01:08] -rw------- 1 boinc boinc       186 Nov 24 14:01 output.list
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc       620 Nov 24 14:01 runtime_log
[2025-11-24 14:01:08] -rw------- 1 boinc boinc    163840 Nov 24 14:01 result.tar.gz
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc      8744 Nov 24 14:01 runtime_log.err
[2025-11-24 14:01:08] -rw------- 1 boinc boinc       649 Nov 24 14:01 P3lNDmWXSh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi2KKDm83dJJn.diag
[2025-11-24 14:01:08] -rw-r--r-- 1 boinc boinc      8786 Nov 24 14:01 stderr.txt
[2025-11-24 14:01:08] No HITS result produced
[2025-11-24 14:01:08]  *** Contents of shared directory: ***
[2025-11-24 14:01:08] total 401408
[2025-11-24 14:01:08] -rw-r--r-- 2 boinc boinc 410260044 Nov 24 13:56 ATLAS.root_0
[2025-11-24 14:01:08] -rw-r--r-- 2 boinc boinc    590105 Nov 24 13:56 input.tar.gz
[2025-11-24 14:01:08] -rw-r--r-- 2 boinc boinc     15847 Nov 24 13:56 start_atlas.sh
[2025-11-24 14:01:08] -rw------- 1 boinc boinc    163840 Nov 24 14:01 result.tar.gz
14:01:10 (1958024): run_atlas exited; CPU time 30.568854
14:01:10 (1958024): called boinc_finish(0)

</stderr_txt>
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