Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 07:35:34 (12284): vboxwrapper version 26210
2025-11-24 07:35:34 (12284): BOINC client version: 8.2.5
2025-11-24 07:35:35 (12284): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-11-24 07:35:35 (12284): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 07:35:36 (12284): Create VM. (boinc_068f8e966166d3ee, slot#0)
2025-11-24 07:35:37 (12284): Setting Memory Size for VM. (4400MB)
2025-11-24 07:35:37 (12284): Setting CPU Count for VM. (4)
2025-11-24 07:35:38 (12284): Setting Chipset Options for VM.
2025-11-24 07:35:38 (12284): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 07:35:38 (12284): Setting Boot Options for VM.
2025-11-24 07:35:39 (12284): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 07:35:40 (12284): Enabling VM Network Access.
2025-11-24 07:35:40 (12284): Disabling USB Support for VM.
2025-11-24 07:35:41 (12284): Disabling COM Port Support for VM.
2025-11-24 07:35:41 (12284): Disabling LPT Port Support for VM.
2025-11-24 07:35:41 (12284): Disabling Audio Support for VM.
2025-11-24 07:35:41 (12284): Disabling Clipboard Support for VM.
2025-11-24 07:35:42 (12284): Disabling Drag and Drop Support for VM.
2025-11-24 07:35:42 (12284): Adding storage controller(s) to VM.
2025-11-24 07:35:42 (12284): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 07:35:44 (12284): Adding VirtualBox Guest Additions to VM.
2025-11-24 07:35:44 (12284): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 07:35:45 (12284): forwarding host port 62800 to guest port 80
2025-11-24 07:35:45 (12284): Enabling remote desktop for VM.
2025-11-24 07:35:45 (12284): Enabling shared directory for VM.
2025-11-24 07:35:46 (12284): Starting VM using VBoxManage interface. (boinc_068f8e966166d3ee, slot#0)
2025-11-24 07:35:53 (12284): Successfully started VM. (PID = '7672')
2025-11-24 07:35:53 (12284): Reporting VM Process ID to BOINC.
2025-11-24 07:35:53 (12284): Guest Log: BIOS: VirtualBox 7.1.4
2025-11-24 07:35:53 (12284): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 07:35:53 (12284): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 07:35:53 (12284): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 07:35:53 (12284): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 07:35:53 (12284): Detected: Web Application Enabled (http://localhost:62800)
2025-11-24 07:35:53 (12284): Detected: Remote Desktop Enabled (localhost:62801)
2025-11-24 07:35:53 (12284): Preference change detected
2025-11-24 07:35:53 (12284): Setting CPU throttle for VM. (100%)
2025-11-24 07:35:53 (12284): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 07:35:55 (12284): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 07:35:55 (12284): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 07:35:58 (12284): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 07:35:58 (12284): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 07:35:58 (12284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 07:37:09 (12284): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 07:37:09 (12284): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 07:37:28 (12284): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000159 main     Log opened 2025-11-24T07:37:26.068128000Z
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000315 main     OS Product: Linux
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000357 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000388 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000417 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000418 main     Process ID: 1319
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.000419 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 07:37:28 (12284): Guest Log: 00:00:00.001126 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 07:37:28 (12284): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 07:37:28 (12284): Guest Log: [INFO] Mounting shared directory
2025-11-24 07:37:28 (12284): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 07:37:32 (12284): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 07:37:32 (12284): Guest Log: [INFO] Detected branch: prod
2025-11-24 07:37:33 (12284): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 07:37:33 (12284): Guest Log: Copying input files
2025-11-24 07:37:34 (12284): Guest Log: Copied input files into RunAtlas.
2025-11-24 07:37:34 (12284): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 07:37:34 (12284): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 07:37:34 (12284): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 07:37:34 (12284): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 07:37:38 (12284): Guest Log: 00:00:10.003447 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 001 746 495 000ns (GuestNow=1 763 987 847 817 429 000 ns GuestLast=1 763 969 846 070 934 000 ns fSetTimeLastLoop=true )
2025-11-24 07:37:45 (12284): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 07:37:45 (12284): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 07:37:45 (12284): Guest Log: 2.6.3.0 1596 0 30004 153246 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 07:38:16 (12284): Guest Log: copied the webapp to /var/www
2025-11-24 07:38:16 (12284): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-24 07:38:16 (12284): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-24 07:38:17 (12284): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 07:38:17 (12284): Guest Log:  *** Starting ATLAS job. (PandaID=6894052232 taskID=47523650) ***
2025-11-24 09:15:56 (12284): Status Report: Elapsed Time: '6000.000000'
2025-11-24 09:15:56 (12284): Status Report: CPU Time: '21524.796875'
2025-11-24 10:56:00 (12284): Status Report: Elapsed Time: '12000.000000'
2025-11-24 10:56:00 (12284): Status Report: CPU Time: '45299.453125'
2025-11-24 12:36:03 (12284): Status Report: Elapsed Time: '18000.000000'
2025-11-24 12:36:03 (12284): Status Report: CPU Time: '69065.531250'
2025-11-24 14:16:07 (12284): Status Report: Elapsed Time: '24000.000000'
2025-11-24 14:16:07 (12284): Status Report: CPU Time: '92836.765625'
2025-11-24 14:34:57 (12284): Guest Log:  *** Job finished ***
2025-11-24 14:34:57 (12284): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:37,977 | INFO     | PID=6001 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:37,977 | INFO     | found 0 job(s) in 20 queues
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:37,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:37,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:37,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:37,978 | INFO     | [monitor] control thread has ended
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,111 | INFO     | all workflow threads have been joined
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,111 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,112 | INFO     | traces error code: 0
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,112 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,271 [wrapper] ==== pilot stdout END ====
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,277 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,282 [wrapper] pilotpid: 6001
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,287 [wrapper] Pilot exit status: 0
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,401 [wrapper] pandaids: 6894052232
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,430 [wrapper] cleanup supervisor_pilot 31676 6002
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,435 [wrapper] Test setup, not cleaning
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,440 [wrapper] apfmon messages muted
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,445 [wrapper] ==== wrapper stdout END ====
2025-11-24 14:34:57 (12284): Guest Log: 2025-11-24 19:34:39,449 [wrapper] ==== wrapper stderr END ====
2025-11-24 14:34:57 (12284): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 14:34:57 (12284): Guest Log:     "exeErrorCode": 0,
2025-11-24 14:34:57 (12284): Guest Log:     "exeErrorDiag": "",
2025-11-24 14:34:57 (12284): Guest Log:     "pilotErrorCode": 0,
2025-11-24 14:34:57 (12284): Guest Log:     "pilotErrorDiag": "",
2025-11-24 14:34:57 (12284): Guest Log:  *** Listing of results directory ***
2025-11-24 14:34:57 (12284): Guest Log: total 338512
2025-11-24 14:34:57 (12284): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 05:21 pilot3.tar.gz
2025-11-24 14:34:57 (12284): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 05:27 runpilot2-wrapper.sh
2025-11-24 14:34:57 (12284): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 05:27 queuedata.json
2025-11-24 14:34:57 (12284): Guest Log: -rwxr-xr-x. 1 atlas atlas      8699 Nov 24 12:37 init_data.xml
2025-11-24 14:34:57 (12284): Guest Log: -rwxr-xr-x. 1 atlas atlas    589954 Nov 24 12:37 input.tar.gz
2025-11-24 14:34:57 (12284): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 12:37 start_atlas.sh
2025-11-24 14:34:57 (12284): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 12:37 EVNT.47523648._000004.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 14:34:57 (12284): Guest Log: -rw-r--r--. 1 atlas atlas      2624 Nov 24 12:38 pandaJob.out
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas    988279 Nov 24 12:39 agis_schedconf.cvmfs.json
2025-11-24 14:34:57 (12284): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 12:39 pilot3
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas 335136476 Nov 24 19:33 HITS.47523650._000080.pool.root.1
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas      1036 Nov 24 19:33 memory_monitor_summary.json
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 19:33 agis_ddmendpoints.agis.ALL.json
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas    527637 Nov 24 19:33 log.47523650._000080.job.log.tgz.1
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas      7794 Nov 24 19:34 heartbeat.json
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 19:34 pilot_heartbeat.json
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 24 19:34 pilotlog.txt
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas   3304003 Nov 24 19:34 log.47523650._000080.job.log.1
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas       357 Nov 24 19:34 output.list
2025-11-24 14:34:57 (12284): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 19:34 runtime_log
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas   3850240 Nov 24 19:34 result.tar.gz
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas       656 Nov 24 19:34 XJwLDmfoHh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnRIKDmarsHTn.diag
2025-11-24 14:34:57 (12284): Guest Log: -rw-r--r--. 1 atlas atlas      8734 Nov 24 19:34 runtime_log.err
2025-11-24 14:34:57 (12284): Guest Log: Looking for outputfile HITS.47523650._000080.pool.root.1
2025-11-24 14:34:57 (12284): Guest Log: HITS file was successfully produced
2025-11-24 14:34:57 (12284): Guest Log: -rw-------. 1 atlas atlas 335136476 Nov 24 19:33 /home/atlas/RunAtlas/HITS.47523650._000080.pool.root.1
2025-11-24 14:34:59 (12284): Guest Log: Successfully finished the ATLAS job!
2025-11-24 14:34:59 (12284): Guest Log: Copying the results back to the shared directory!
2025-11-24 14:34:59 (12284): Guest Log:  *** Contents of shared directory: ***
2025-11-24 14:34:59 (12284): Guest Log: total 622640
2025-11-24 14:34:59 (12284): Guest Log: -rwxrwxrwx. 1 root root 297970808 Nov 24 12:35 ATLAS.root_0
2025-11-24 14:34:59 (12284): Guest Log: -rwxrwxrwx. 1 root root 335136476 Nov 24  2025 HITS.pool.root.1
2025-11-24 14:34:59 (12284): Guest Log: -rwxrwxrwx. 1 root root      8699 Nov 24 12:35 init_data.xml
2025-11-24 14:34:59 (12284): Guest Log: -rwxrwxrwx. 1 root root    589954 Nov 24 12:29 input.tar.gz
2025-11-24 14:34:59 (12284): Guest Log: -rwxrwxrwx. 1 root root   3850240 Nov 24  2025 result.tar.gz
2025-11-24 14:34:59 (12284): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 12:29 start_atlas.sh
2025-11-24 14:34:59 (12284): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 14:34:59 (12284): VM Completion File Detected.
2025-11-24 14:34:59 (12284): Powering off VM.
2025-11-24 14:35:00 (12284): Successfully stopped VM.
2025-11-24 14:35:00 (12284): Deregistering VM. (boinc_068f8e966166d3ee, slot#0)
2025-11-24 14:35:00 (12284): Removing network bandwidth throttle group from VM.
2025-11-24 14:35:00 (12284): Removing VM from VirtualBox.
2025-11-24 14:35:05 (12284): called boinc_finish(0)

</stderr_txt>
]]>

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