Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:23:22 (26704): wrapper (7.7.26015): starting
02:23:22 (26704): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 02:23:22] Arguments: --nthreads 8
[2025-11-27 02:23:22] Threads: 8
[2025-11-27 02:23:22] Checking for CVMFS
[2025-11-27 02:23:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:23:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:23:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:23:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:23:25] 2.11.2.0 5744 286095 142716 153342 1 84 21094350 25165825 1288 130560 12 162544905 99.890 81137322 3220 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 02:23:25] CVMFS is ok
[2025-11-27 02:23:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:23:25] Checking for apptainer binary...
[2025-11-27 02:23:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:23:25] Running /usr/bin/apptainer --version
[2025-11-27 02:23:25] apptainer version 1.3.2-1.el7
[2025-11-27 02:23:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:23:45] cg-vwn299.simple-grid.lan
[2025-11-27 02:23:45] apptainer works
[2025-11-27 02:23:45] Set ATHENA_PROC_NUMBER=8
[2025-11-27 02:23:45] Set ATHENA_CORE_NUMBER=8
[2025-11-27 02:23:45] Starting ATLAS job with PandaID=6895353451
[2025-11-27 02:23:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:16:37]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:16:37] 2025-11-28 01:15:34,388 | INFO     | 85668s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 02:16:37] 2025-11-28 01:15:35,543 | INFO     | PID=30487 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:16:37] 2025-11-28 01:15:35,543 | INFO     | .. there are 9 such processes running
[2025-11-28 02:16:37] 2025-11-28 01:15:35,875 | INFO     | monitor loop #5773: job 0:6895353451 is in state 'finished'
[2025-11-28 02:16:37] 2025-11-28 01:15:35,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:16:37] 2025-11-28 01:15:36,544 | INFO     | time since job start (85658s) is within the limit (172800.0s)
[2025-11-28 02:16:37] 2025-11-28 01:15:38,382 | INFO     | monitor loop #5774: job 0:6895353451 is in state 'finished'
[2025-11-28 02:16:37] 2025-11-28 01:15:38,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:16:37] 2025-11-28 01:15:38,554 | INFO     | time since job start (85660s) is within the limit (172800.0s)
[2025-11-28 02:16:37] 2025-11-28 01:15:40,561 | INFO     | time since job start (85662s) is within the limit (172800.0s)
[2025-11-28 02:16:37] 2025-11-28 01:15:40,893 | INFO     | monitor loop #5775: job 0:6895353451 is in state 'finished'
[2025-11-28 02:16:37] 2025-11-28 01:15:40,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:16:37] 2025-11-28 01:15:42,568 | INFO     | time since job start (85664s) is within the limit (172800.0s)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,398 | INFO     | monitor loop #5776: job 0:6895353451 is in state 'finished'
[2025-11-28 02:16:37] 2025-11-28 01:15:43,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,628 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 02:16:37] 2025-11-28 01:15:43,629 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-28 02:16:37] 2025-11-28 01:15:43,631 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895353451/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,632 | INFO     | extracted standard info from prmon json
[2025-11-28 02:16:37] 2025-11-28 01:15:43,632 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:16:37] 2025-11-28 01:15:43,632 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:16:37] 2025-11-28 01:15:43,666 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:16:37] 2025-11-28 01:15:43,668 | INFO     | sum of square deviations: 841783395581.886
[2025-11-28 02:16:37] 2025-11-28 01:15:43,745 | INFO     | sum of deviations: 2764491005897.717
[2025-11-28 02:16:37] 2025-11-28 01:15:43,745 | INFO     | mean x: 1764249919.09319
[2025-11-28 02:16:37] 2025-11-28 01:15:43,746 | INFO     | mean y: 2851996.917562724
[2025-11-28 02:16:37] 2025-11-28 01:15:43,746 | INFO     | intersect: -5791100531.829431
[2025-11-28 02:16:37] 2025-11-28 01:15:43,747 | INFO     | chi2: 20.156911706904516
[2025-11-28 02:16:37] 2025-11-28 01:15:43,749 | INFO     | sum of square deviations: 832764817178.3864
[2025-11-28 02:16:37] 2025-11-28 01:15:43,829 | INFO     | sum of deviations: 3224948716298.144
[2025-11-28 02:16:37] 2025-11-28 01:15:43,830 | INFO     | mean x: 1764249766.5971222
[2025-11-28 02:16:37] 2025-11-28 01:15:43,830 | INFO     | mean y: 2859781.8877697843
[2025-11-28 02:16:37] 2025-11-28 01:15:43,830 | INFO     | intersect: -6829339300.795041
[2025-11-28 02:16:37] 2025-11-28 01:15:43,832 | INFO     | chi2: 16.972625250753214
[2025-11-28 02:16:37] 2025-11-28 01:15:43,832 | INFO     | current chi2=16.972625250753214 (change=15.797491711295047 %)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,832 | INFO     | right removable region: 1389
[2025-11-28 02:16:37] 2025-11-28 01:15:43,834 | INFO     | sum of square deviations: 832763886928.3868
[2025-11-28 02:16:37] 2025-11-28 01:15:43,887 | INFO     | sum of deviations: 2194267327088.36
[2025-11-28 02:16:37] 2025-11-28 01:15:43,888 | INFO     | mean x: 1764250071.5971222
[2025-11-28 02:16:37] 2025-11-28 01:15:43,888 | INFO     | mean y: 2861637.2899280577
[2025-11-28 02:16:37] 2025-11-28 01:15:43,888 | INFO     | intersect: -4645798504.779573
[2025-11-28 02:16:37] 2025-11-28 01:15:43,890 | INFO     | chi2: 15.772497975640379
[2025-11-28 02:16:37] 2025-11-28 01:15:43,890 | INFO     | current chi2=15.772497975640379 (change=21.75141606520163 %)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,890 | INFO     | left removable region: 10
[2025-11-28 02:16:37] 2025-11-28 01:15:43,892 | INFO     | sum of square deviations: 813149333102.5422
[2025-11-28 02:16:37] 2025-11-28 01:15:43,944 | INFO     | sum of deviations: 2292287448725.561
[2025-11-28 02:16:37] 2025-11-28 01:15:43,945 | INFO     | mean x: 1764250041.1058738
[2025-11-28 02:16:37] 2025-11-28 01:15:43,945 | INFO     | mean y: 2879216.8317621467
[2025-11-28 02:16:37] 2025-11-28 01:15:43,945 | INFO     | intersect: -4970583911.041897
[2025-11-28 02:16:37] 2025-11-28 01:15:43,947 | INFO     | chi2: 8.959627578289622
[2025-11-28 02:16:37] 2025-11-28 01:15:43,947 | INFO     | current memory leak: 2.82 B/s (using 1379 data points, chi2=8.96)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,948 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | ..............................
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . Timing measurements:
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . get job = 0 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . initial setup = 12 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . payload setup = 164 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . stage-in = 0 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . payload execution = 85197 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . stage-out = 5 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | . log creation = 1 s
[2025-11-28 02:16:37] 2025-11-28 01:15:43,949 | INFO     | ..............................
[2025-11-28 02:16:37] 2025-11-28 01:15:44,055 | INFO     | 
[2025-11-28 02:16:37] 2025-11-28 01:15:44,056 | INFO     | job summary report
[2025-11-28 02:16:37] 2025-11-28 01:15:44,056 | INFO     | --------------------------------------------------
[2025-11-28 02:16:37] 2025-11-28 01:15:44,056 | INFO     | PanDA job id: 6895353451
[2025-11-28 02:16:37] 2025-11-28 01:15:44,056 | INFO     | task id: 47556149
[2025-11-28 02:16:37] 2025-11-28 01:15:44,056 | INFO     | errors: (none)
[2025-11-28 02:16:37] 2025-11-28 01:15:44,056 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | pilot state: finished 
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | transexitcode: 0
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | exeerrorcode: 0
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | exeerrordiag: 
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | exitcode: 0
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | exitmsg: OK
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | cpuconsumptiontime: 321810 s
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | nevents: 1000
[2025-11-28 02:16:37] 2025-11-28 01:15:44,057 | INFO     | neventsw: 0
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | pid: 4701
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | pgrp: 4701
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | corecount: 8
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | event service: False
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | sizes: {0: 2283436, 1: 2284292, 2: 2284292, 12: 2284320, 23: 2284348, 34: 2284376, 45: 2284532, 56: 2284560, 66: 2284588, 77: 2284616, 88: 2284672, 99: 2284980, 10
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | --------------------------------------------------
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | 
[2025-11-28 02:16:37] 2025-11-28 01:15:44,058 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-28 02:16:37] 2025-11-28 01:15:44,389 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:16:37] 2025-11-28 01:15:44,392 | INFO     | job 6895353451 has completed (purged errors)
[2025-11-28 02:16:37] 2025-11-28 01:15:44,392 | INFO     | overall cleanup function is called
[2025-11-28 02:16:37] 2025-11-28 01:15:45,419 | INFO     | --- collectZombieJob: --- 10, [4701]
[2025-11-28 02:16:37] 2025-11-28 01:15:45,420 | INFO     | zombie collector waiting for pid 4701
[2025-11-28 02:16:37] 2025-11-28 01:15:45,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:16:37] 2025-11-28 01:15:45,420 | INFO     | collected zombie processes
[2025-11-28 02:16:37] 2025-11-28 01:15:45,420 | INFO     | will attempt to kill all subprocesses of pid=4701
[2025-11-28 02:16:37] 2025-11-28 01:15:45,550 | INFO     | process IDs to be killed: [4701] (in reverse order)
[2025-11-28 02:16:37] 2025-11-28 01:15:46,283 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:16:37] 2025-11-28 01:15:46,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:16:37] 2025-11-28 01:15:46,287 | INFO     | did not find any defunct processes belonging to 4701
[2025-11-28 02:16:37] 2025-11-28 01:15:46,289 | INFO     | did not find any defunct processes belonging to 4701
[2025-11-28 02:16:37] 2025-11-28 01:15:46,339 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:16:37] 2025-11-28 01:15:46,339 | INFO     | ready for new job
[2025-11-28 02:16:37] 2025-11-28 01:15:46,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:16:37] 2025-11-28 01:15:46,344 | INFO     | ***************************************
[2025-11-28 02:16:37] 2025-11-28 01:15:46,344 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:16:37] 2025-11-28 01:15:46,344 | INFO     | ***************************************
[2025-11-28 02:16:37] 2025-11-28 01:15:46,344 | INFO     | 
[2025-11-28 02:16:37] 2025-11-28 01:15:46,345 | INFO     | pilot is running in a VM
[2025-11-28 02:16:37] 2025-11-28 01:15:46,345 | INFO     | architecture information:
[2025-11-28 02:16:37] 2025-11-28 01:15:46,359 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:16:37] 2025-11-28 01:15:46,531 | INFO     | cat /etc/os-release:
[2025-11-28 02:16:37] NAME="CentOS Linux"
[2025-11-28 02:16:37] VERSION="7 (Core)"
[2025-11-28 02:16:37] ID="centos"
[2025-11-28 02:16:37] ID_LIKE="rhel fedora"
[2025-11-28 02:16:37] VERSION_ID="7"
[2025-11-28 02:16:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:16:37] ANSI_COLOR="0;31"
[2025-11-28 02:16:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:16:37] HOME_URL="https://www.centos.org/"
[2025-11-28 02:16:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:16:37] 
[2025-11-28 02:16:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:16:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:16:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:16:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:16:37] 
[2025-11-28 02:16:37] 2025-11-28 01:15:46,531 | INFO     | ***************************************
[2025-11-28 02:16:37] 2025-11-28 01:15:47,035 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-28 02:16:37] 2025-11-28 01:15:47,281 | INFO     | sufficient remaining disk space (494943600640 B)
[2025-11-28 02:16:37] 2025-11-28 01:15:47,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:16:37] 2025-11-28 01:15:47,282 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:16:37] 2025-11-28 01:15:47,282 | INFO     | update_server=False
[2025-11-28 02:16:37] 2025-11-28 01:15:47,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:16:37] 2025-11-28 01:15:47,282 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:16:37] 2025-11-28 01:15:47,283 | INFO     | aborting loop
[2025-11-28 02:16:37] 2025-11-28 01:15:47,286 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:16:37] 2025-11-28 01:15:48,050 | INFO     | all data control threads have been joined
[2025-11-28 02:16:37] 2025-11-28 01:15:48,080 | INFO     | all job control threads have been joined
[2025-11-28 02:16:37] 2025-11-28 01:15:48,289 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:48,291 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:48,383 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:48,410 | INFO     | all payload control threads have been joined
[2025-11-28 02:16:37] 2025-11-28 01:15:48,484 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:48,641 | INFO     | [job] validate thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:48,687 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:48,873 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:49,057 | INFO     | [data] control thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:49,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:16:37] 2025-11-28 01:15:49,086 | INFO     | [job] control thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:49,289 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:49,293 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:49,416 | INFO     | [payload] control thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:49,426 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:50,075 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:50,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:16:37] 2025-11-28 01:15:54,359 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:15:58,167 | INFO     | job.realtimelogging is not enabled
[2025-11-28 02:16:37] 2025-11-28 01:15:59,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:16:37] 2025-11-28 01:16:15,751 | INFO     | PID=30487 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:16:37] 2025-11-28 01:16:15,751 | INFO     | .. there are 9 such processes running
[2025-11-28 02:16:37] 2025-11-28 01:16:15,751 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:16:37] 2025-11-28 01:16:15,752 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:16:37] 2025-11-28 01:16:15,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:16:37] 2025-11-28 01:16:28,235 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:16:37] 2025-11-28 01:16:28,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158539605824)>', '<ExcThread(monitor, started 140157801985792)>']
[2025-11-28 02:16:37] 2025-11-28 01:16:28,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:16:37] 2025-11-28 01:16:28,828 | INFO     | [monitor] control thread has ended
[2025-11-28 02:16:37] 2025-11-28 01:16:33,696 | INFO     | all workflow threads have been joined
[2025-11-28 02:16:37] 2025-11-28 01:16:33,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:16:37] 2025-11-28 01:16:33,697 | INFO     | traces error code: 0
[2025-11-28 02:16:37] 2025-11-28 01:16:33,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:16:37] 2025-11-28 01:16:34,006 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:16:37] 2025-11-28 01:16:34,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:16:37] 2025-11-28 01:16:34,114 [wrapper] pilotpid: 30487
[2025-11-28 02:16:37] 2025-11-28 01:16:34,207 [wrapper] Pilot exit status: 0
[2025-11-28 02:16:37] 2025-11-28 01:16:34,621 [wrapper] pandaids: 6895353451
[2025-11-28 02:16:37] 2025-11-28 01:16:35,215 [wrapper] cleanup supervisor_pilot   849 30488
[2025-11-28 02:16:37] 2025-11-28 01:16:35,274 [wrapper] Test setup, not cleaning
[2025-11-28 02:16:37] 2025-11-28 01:16:35,370 [wrapper] apfmon messages muted
[2025-11-28 02:16:37] 2025-11-28 01:16:35,418 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:16:37] 2025-11-28 01:16:35,506 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:16:37]  *** Error codes and diagnostics ***
[2025-11-28 02:16:37]     "exeErrorCode": 0,
[2025-11-28 02:16:37]     "exeErrorDiag": "",
[2025-11-28 02:16:37]     "pilotErrorCode": 0,
[2025-11-28 02:16:37]     "pilotErrorDiag": "",
[2025-11-28 02:16:37]  *** Listing of results directory ***
[2025-11-28 02:16:37] total 1337160
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc    576529 Nov 23 05:55 pilot3.tar.gz
[2025-11-28 02:16:37] -rwx------. 1 boinc boinc     36292 Nov 23 06:12 runpilot2-wrapper.sh
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc      5112 Nov 23 06:12 queuedata.json
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc       100 Nov 27 02:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:16:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 02:23 run_atlas
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc       105 Nov 27 02:23 job.xml
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc      6390 Nov 27 02:23 init_data.xml
[2025-11-28 02:16:37] -rw-r--r--. 2 boinc boinc 408611681 Nov 27 02:23 EVNT.47483658._001139.pool.root.1
[2025-11-28 02:16:37] -rw-r--r--. 2 boinc boinc     15847 Nov 27 02:23 start_atlas.sh
[2025-11-28 02:16:37] drwxrwx--x. 2 boinc boinc        68 Nov 27 02:23 shared
[2025-11-28 02:16:37] -rw-r--r--. 2 boinc boinc    590100 Nov 27 02:23 input.tar.gz
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc         0 Nov 27 02:23 boinc_lockfile
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc      2785 Nov 27 02:23 pandaJob.out
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc    991530 Nov 27 02:27 agis_schedconf.cvmfs.json
[2025-11-28 02:16:37] drwx------. 5 boinc boinc      4096 Nov 27 02:27 pilot3
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc       533 Nov 28 01:50 boinc_task_state.xml
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc 929013102 Nov 28 02:12 HITS.47556149._001257.pool.root.1
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc      1028 Nov 28 02:13 memory_monitor_summary.json
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc   1516240 Nov 28 02:14 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc   2468111 Nov 28 02:14 log.47556149._001257.job.log.tgz.1
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc        95 Nov 28 02:15 pilot_heartbeat.json
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc      7942 Nov 28 02:15 heartbeat.json
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc      8192 Nov 28 02:16 boinc_mmap_file
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc        29 Nov 28 02:16 wrapper_checkpoint.txt
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc      4956 Nov 28 02:16 pilotlog.txt
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc  11394970 Nov 28 02:16 log.47556149._001257.job.log.1
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc       353 Nov 28 02:16 output.list
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc       620 Nov 28 02:16 runtime_log
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc  13885440 Nov 28 02:16 result.tar.gz
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc      8817 Nov 28 02:16 runtime_log.err
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc       662 Nov 28 02:16 nLILDmhZHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxdKKDmwrwcxn.diag
[2025-11-28 02:16:37] -rw-r--r--. 1 boinc boinc     21492 Nov 28 02:16 stderr.txt
[2025-11-28 02:16:37] HITS file was successfully produced:
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc 929013102 Nov 28 02:12 shared/HITS.pool.root.1
[2025-11-28 02:16:37]  *** Contents of shared directory: ***
[2025-11-28 02:16:37] total 1320432
[2025-11-28 02:16:37] -rw-r--r--. 2 boinc boinc 408611681 Nov 27 02:23 ATLAS.root_0
[2025-11-28 02:16:37] -rw-r--r--. 2 boinc boinc     15847 Nov 27 02:23 start_atlas.sh
[2025-11-28 02:16:37] -rw-r--r--. 2 boinc boinc    590100 Nov 27 02:23 input.tar.gz
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc 929013102 Nov 28 02:12 HITS.pool.root.1
[2025-11-28 02:16:37] -rw-------. 1 boinc boinc  13885440 Nov 28 02:16 result.tar.gz
02:16:39 (26704): run_atlas exited; CPU time 322398.041915
02:16:39 (26704): called boinc_finish(0)

</stderr_txt>
]]>

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