Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:54 (26141): wrapper (7.7.26015): starting
00:28:54 (26141): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:28:54] Arguments: --nthreads 8
[2025-11-27 00:28:54] Threads: 8
[2025-11-27 00:28:54] Checking for CVMFS
[2025-11-27 00:28:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:28:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:28:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:28:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:28:57] 2.11.2.0 31978 285981 141984 153340 0 85 23822729 25165824 1338 130560 12 131581663 99.874 77199023 2690 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:28:57] CVMFS is ok
[2025-11-27 00:28:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:28:57] Checking for apptainer binary...
[2025-11-27 00:28:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:28:57] Running /usr/bin/apptainer --version
[2025-11-27 00:28:57] apptainer version 1.3.2-1.el7
[2025-11-27 00:28:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:29:04] cg-vwn266.simple-grid.lan
[2025-11-27 00:29:04] apptainer works
[2025-11-27 00:29:04] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:29:04] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:29:04] Starting ATLAS job with PandaID=6895344042
[2025-11-27 00:29:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:05:41]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:05:41] 2025-11-27 23:04:54,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:05:41] 2025-11-27 23:04:55,085 | INFO     | time since job start (84715s) is within the limit (172800.0s)
[2025-11-28 00:05:41] 2025-11-27 23:04:57,091 | INFO     | time since job start (84717s) is within the limit (172800.0s)
[2025-11-28 00:05:41] 2025-11-27 23:04:57,331 | INFO     | monitor loop #5693: job 0:6895344042 is in state 'finished'
[2025-11-28 00:05:41] 2025-11-27 23:04:57,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:05:41] 2025-11-27 23:04:59,101 | INFO     | time since job start (84719s) is within the limit (172800.0s)
[2025-11-28 00:05:41] 2025-11-27 23:04:59,839 | INFO     | monitor loop #5694: job 0:6895344042 is in state 'finished'
[2025-11-28 00:05:41] 2025-11-27 23:04:59,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:05:41] 2025-11-27 23:05:01,115 | INFO     | time since job start (84721s) is within the limit (172800.0s)
[2025-11-28 00:05:41] 2025-11-27 23:05:02,349 | INFO     | monitor loop #5695: job 0:6895344042 is in state 'finished'
[2025-11-28 00:05:41] 2025-11-27 23:05:02,349 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:05:41] 2025-11-27 23:05:03,123 | INFO     | time since job start (84723s) is within the limit (172800.0s)
[2025-11-28 00:05:41] 2025-11-27 23:05:04,860 | INFO     | monitor loop #5696: job 0:6895344042 is in state 'finished'
[2025-11-28 00:05:41] 2025-11-27 23:05:04,860 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:05:41] 2025-11-27 23:05:04,920 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:05:41] 2025-11-27 23:05:04,923 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:05:41] 2025-11-27 23:05:04,925 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6895344042/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:05:41] 2025-11-27 23:05:04,926 | INFO     | extracted standard info from prmon json
[2025-11-28 00:05:41] 2025-11-27 23:05:04,926 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:05:41] 2025-11-27 23:05:04,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:05:41] 2025-11-27 23:05:04,967 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:05:41] 2025-11-27 23:05:04,969 | INFO     | sum of square deviations: 814920056706.4772
[2025-11-28 00:05:41] 2025-11-27 23:05:05,045 | INFO     | sum of deviations: 2716818185091.6313
[2025-11-28 00:05:41] 2025-11-27 23:05:05,045 | INFO     | mean x: 1764242536.5572464
[2025-11-28 00:05:41] 2025-11-27 23:05:05,045 | INFO     | mean y: 2837914.3463768116
[2025-11-28 00:05:41] 2025-11-27 23:05:05,046 | INFO     | intersect: -5878875471.875177
[2025-11-28 00:05:41] 2025-11-27 23:05:05,047 | INFO     | chi2: 23.134110286776195
[2025-11-28 00:05:41] 2025-11-27 23:05:05,049 | INFO     | sum of square deviations: 806094717610.8684
[2025-11-28 00:05:41] 2025-11-27 23:05:05,113 | INFO     | sum of deviations: 3173031044250.94
[2025-11-28 00:05:41] 2025-11-27 23:05:05,113 | INFO     | mean x: 1764242384.061091
[2025-11-28 00:05:41] 2025-11-27 23:05:05,113 | INFO     | mean y: 2845796.036363636
[2025-11-28 00:05:41] 2025-11-27 23:05:05,113 | INFO     | intersect: -6941742391.814149
[2025-11-28 00:05:41] 2025-11-27 23:05:05,115 | INFO     | chi2: 19.904490794105374
[2025-11-28 00:05:41] 2025-11-27 23:05:05,115 | INFO     | current chi2=19.904490794105374 (change=13.960422305572392 %)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,115 | INFO     | right removable region: 1374
[2025-11-28 00:05:41] 2025-11-27 23:05:05,117 | INFO     | sum of square deviations: 806093827620.8683
[2025-11-28 00:05:41] 2025-11-27 23:05:05,136 | INFO     | time since job start (84725s) is within the limit (172800.0s)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,178 | INFO     | sum of deviations: 2142863662092.699
[2025-11-28 00:05:41] 2025-11-27 23:05:05,178 | INFO     | mean x: 1764242689.061091
[2025-11-28 00:05:41] 2025-11-27 23:05:05,178 | INFO     | mean y: 2847830.586909091
[2025-11-28 00:05:41] 2025-11-27 23:05:05,178 | INFO     | intersect: -4687092000.189
[2025-11-28 00:05:41] 2025-11-27 23:05:05,180 | INFO     | chi2: 18.519761042195316
[2025-11-28 00:05:41] 2025-11-27 23:05:05,180 | INFO     | current chi2=18.519761042195316 (change=19.946084752688805 %)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,180 | INFO     | left removable region: 10
[2025-11-28 00:05:41] 2025-11-27 23:05:05,182 | INFO     | sum of square deviations: 786901984672.3839
[2025-11-28 00:05:41] 2025-11-27 23:05:05,235 | INFO     | sum of deviations: 2185094371222.2114
[2025-11-28 00:05:41] 2025-11-27 23:05:05,236 | INFO     | mean x: 1764242658.569648
[2025-11-28 00:05:41] 2025-11-27 23:05:05,236 | INFO     | mean y: 2866516.3819648093
[2025-11-28 00:05:41] 2025-11-27 23:05:05,236 | INFO     | intersect: -4896138414.093132
[2025-11-28 00:05:41] 2025-11-27 23:05:05,238 | INFO     | chi2: 10.916002805650228
[2025-11-28 00:05:41] 2025-11-27 23:05:05,238 | INFO     | current memory leak: 2.78 B/s (using 1364 data points, chi2=10.92)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,239 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | ..............................
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . Timing measurements:
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . get job = 0 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . initial setup = 13 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . payload setup = 132 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . stage-in = 0 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . payload execution = 84282 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . stage-out = 5 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | . log creation = 2 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,240 | INFO     | ..............................
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | 
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | job summary report
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | --------------------------------------------------
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | PanDA job id: 6895344042
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | task id: 47556137
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | errors: (none)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,359 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | pilot state: finished 
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | transexitcode: 0
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | exeerrorcode: 0
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | exeerrordiag: 
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | exitcode: 0
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | exitmsg: OK
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | cpuconsumptiontime: 317507 s
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | nevents: 1000
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | neventsw: 0
[2025-11-28 00:05:41] 2025-11-27 23:05:05,360 | INFO     | pid: 4158
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | pgrp: 4158
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | corecount: 8
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | event service: False
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 13: 2284320, 23: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 66: 2284616, 77: 2284644, 88: 2284700, 99: 2285008, 10
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | --------------------------------------------------
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | 
[2025-11-28 00:05:41] 2025-11-27 23:05:05,361 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-28 00:05:41] 2025-11-27 23:05:05,896 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | job 6895344042 has completed (purged errors)
[2025-11-28 00:05:41] 2025-11-27 23:05:05,898 | INFO     | overall cleanup function is called
[2025-11-28 00:05:41] 2025-11-27 23:05:06,916 | INFO     | --- collectZombieJob: --- 10, [4158]
[2025-11-28 00:05:41] 2025-11-27 23:05:06,916 | INFO     | zombie collector waiting for pid 4158
[2025-11-28 00:05:41] 2025-11-27 23:05:06,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:05:41] 2025-11-27 23:05:06,916 | INFO     | collected zombie processes
[2025-11-28 00:05:41] 2025-11-27 23:05:06,917 | INFO     | will attempt to kill all subprocesses of pid=4158
[2025-11-28 00:05:41] 2025-11-27 23:05:07,056 | INFO     | process IDs to be killed: [4158] (in reverse order)
[2025-11-28 00:05:41] 2025-11-27 23:05:07,564 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:05:41] 2025-11-27 23:05:07,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:05:41] 2025-11-27 23:05:07,567 | INFO     | did not find any defunct processes belonging to 4158
[2025-11-28 00:05:41] 2025-11-27 23:05:07,570 | INFO     | did not find any defunct processes belonging to 4158
[2025-11-28 00:05:41] 2025-11-27 23:05:07,622 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:05:41] 2025-11-27 23:05:07,622 | INFO     | ready for new job
[2025-11-28 00:05:41] 2025-11-27 23:05:07,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:05:41] 2025-11-27 23:05:07,628 | INFO     | ***************************************
[2025-11-28 00:05:41] 2025-11-27 23:05:07,628 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:05:41] 2025-11-27 23:05:07,628 | INFO     | ***************************************
[2025-11-28 00:05:41] 2025-11-27 23:05:07,628 | INFO     | 
[2025-11-28 00:05:41] 2025-11-27 23:05:07,629 | INFO     | pilot is running in a VM
[2025-11-28 00:05:41] 2025-11-27 23:05:07,629 | INFO     | architecture information:
[2025-11-28 00:05:41] 2025-11-27 23:05:07,630 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:05:41] 2025-11-27 23:05:07,917 | INFO     | cat /etc/os-release:
[2025-11-28 00:05:41] NAME="CentOS Linux"
[2025-11-28 00:05:41] VERSION="7 (Core)"
[2025-11-28 00:05:41] ID="centos"
[2025-11-28 00:05:41] ID_LIKE="rhel fedora"
[2025-11-28 00:05:41] VERSION_ID="7"
[2025-11-28 00:05:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:05:41] ANSI_COLOR="0;31"
[2025-11-28 00:05:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:05:41] HOME_URL="https://www.centos.org/"
[2025-11-28 00:05:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:05:41] 
[2025-11-28 00:05:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:05:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:05:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:05:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:05:41] 
[2025-11-28 00:05:41] 2025-11-27 23:05:07,918 | INFO     | ***************************************
[2025-11-28 00:05:41] 2025-11-27 23:05:08,421 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-28 00:05:41] 2025-11-27 23:05:08,663 | INFO     | sufficient remaining disk space (495391342592 B)
[2025-11-28 00:05:41] 2025-11-27 23:05:08,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:05:41] 2025-11-27 23:05:08,664 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:05:41] 2025-11-27 23:05:08,664 | INFO     | update_server=False
[2025-11-28 00:05:41] 2025-11-27 23:05:08,664 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:05:41] 2025-11-27 23:05:08,665 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:05:41] 2025-11-27 23:05:08,665 | INFO     | aborting loop
[2025-11-28 00:05:41] 2025-11-27 23:05:08,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:05:41] 2025-11-27 23:05:08,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:05:41] 2025-11-27 23:05:09,099 | INFO     | all data control threads have been joined
[2025-11-28 00:05:41] 2025-11-27 23:05:09,163 | INFO     | all payload control threads have been joined
[2025-11-28 00:05:41] 2025-11-27 23:05:09,670 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:09,671 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:09,767 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,056 | INFO     | [job] validate thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,105 | INFO     | [data] control thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,169 | INFO     | [payload] control thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,276 | INFO     | all job control threads have been joined
[2025-11-28 00:05:41] 2025-11-27 23:05:10,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:05:41] 2025-11-27 23:05:10,559 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,575 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,673 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,674 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,926 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:10,994 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:11,282 | INFO     | [job] control thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:11,383 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:12,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:18,800 | INFO     | job.realtimelogging is not enabled
[2025-11-28 00:05:41] 2025-11-27 23:05:19,806 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:05:41] 2025-11-27 23:05:28,019 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:05:41] 2025-11-27 23:05:29,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140106576725824)>', '<ExcThread(monitor, started 140105918441216)>']
[2025-11-28 00:05:41] 2025-11-27 23:05:34,052 | INFO     | all workflow threads have been joined
[2025-11-28 00:05:41] 2025-11-27 23:05:34,052 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:05:41] 2025-11-27 23:05:34,052 | INFO     | traces error code: 0
[2025-11-28 00:05:41] 2025-11-27 23:05:34,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:05:41] 2025-11-27 23:05:38,324 | INFO     | PID=29959 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:05:41] 2025-11-27 23:05:38,325 | INFO     | .. there are 9 such processes running
[2025-11-28 00:05:41] 2025-11-27 23:05:38,325 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:05:41] 2025-11-27 23:05:38,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:05:41] 2025-11-27 23:05:38,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:05:41] 2025-11-27 23:05:38,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:05:41] 2025-11-27 23:05:38,326 | INFO     | [monitor] control thread has ended
[2025-11-28 00:05:41] 2025-11-27 23:05:38,511 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:05:41] 2025-11-27 23:05:38,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:05:41] 2025-11-27 23:05:38,526 [wrapper] pilotpid: 29959
[2025-11-28 00:05:41] 2025-11-27 23:05:38,528 [wrapper] Pilot exit status: 0
[2025-11-28 00:05:41] 2025-11-27 23:05:38,712 [wrapper] pandaids: 6895344042
[2025-11-28 00:05:41] 2025-11-27 23:05:39,642 [wrapper] cleanup supervisor_pilot 10145 29960
[2025-11-28 00:05:41] 2025-11-27 23:05:39,746 [wrapper] Test setup, not cleaning
[2025-11-28 00:05:41] 2025-11-27 23:05:39,859 [wrapper] apfmon messages muted
[2025-11-28 00:05:41] 2025-11-27 23:05:39,969 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:05:41] 2025-11-27 23:05:40,002 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:05:41]  *** Error codes and diagnostics ***
[2025-11-28 00:05:41]     "exeErrorCode": 0,
[2025-11-28 00:05:41]     "exeErrorDiag": "",
[2025-11-28 00:05:41]     "pilotErrorCode": 0,
[2025-11-28 00:05:41]     "pilotErrorDiag": "",
[2025-11-28 00:05:41]  *** Listing of results directory ***
[2025-11-28 00:05:41] total 1337920
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc    576529 Nov 22 17:22 pilot3.tar.gz
[2025-11-28 00:05:41] -rwx------. 1 boinc boinc     36292 Nov 22 17:32 runpilot2-wrapper.sh
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc      5112 Nov 22 17:32 queuedata.json
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:05:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:28 run_atlas
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:28 job.xml
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc      6392 Nov 27 00:28 init_data.xml
[2025-11-28 00:05:41] -rw-r--r--. 2 boinc boinc 411862205 Nov 27 00:28 EVNT.47483658._000431.pool.root.1
[2025-11-28 00:05:41] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:28 start_atlas.sh
[2025-11-28 00:05:41] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:28 shared
[2025-11-28 00:05:41] -rw-r--r--. 2 boinc boinc    590095 Nov 27 00:28 input.tar.gz
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:28 boinc_lockfile
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc      2785 Nov 27 00:29 pandaJob.out
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc    991538 Nov 27 00:32 agis_schedconf.cvmfs.json
[2025-11-28 00:05:41] drwx------. 5 boinc boinc      4096 Nov 27 00:33 pilot3
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:37 boinc_task_state.xml
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc 926819375 Nov 28 00:02 HITS.47556137._004269.pool.root.1
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc      1027 Nov 28 00:03 memory_monitor_summary.json
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc   1516240 Nov 28 00:03 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc   2458739 Nov 28 00:03 log.47556137._004269.job.log.tgz.1
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc      7938 Nov 28 00:05 heartbeat.json
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:05 boinc_mmap_file
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:05 wrapper_checkpoint.txt
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc       820 Nov 28 00:05 pilotlog.txt
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc        95 Nov 28 00:05 pilot_heartbeat.json
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc  11265730 Nov 28 00:05 log.47556137._004269.job.log.1
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc       353 Nov 28 00:05 output.list
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:05 runtime_log
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc  13742080 Nov 28 00:05 result.tar.gz
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:05 runtime_log.err
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc       662 Nov 28 00:05 3dhNDmvh5g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaGKKDmsP6rIo.diag
[2025-11-28 00:05:41] -rw-r--r--. 1 boinc boinc     21407 Nov 28 00:05 stderr.txt
[2025-11-28 00:05:41] HITS file was successfully produced:
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc 926819375 Nov 28 00:02 shared/HITS.pool.root.1
[2025-11-28 00:05:41]  *** Contents of shared directory: ***
[2025-11-28 00:05:41] total 1321328
[2025-11-28 00:05:41] -rw-r--r--. 2 boinc boinc 411862205 Nov 27 00:28 ATLAS.root_0
[2025-11-28 00:05:41] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:28 start_atlas.sh
[2025-11-28 00:05:41] -rw-r--r--. 2 boinc boinc    590095 Nov 27 00:28 input.tar.gz
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc 926819375 Nov 28 00:02 HITS.pool.root.1
[2025-11-28 00:05:41] -rw-------. 1 boinc boinc  13742080 Nov 28 00:05 result.tar.gz
00:05:43 (26141): run_atlas exited; CPU time 318093.353659
00:05:43 (26141): called boinc_finish(0)

</stderr_txt>
]]>

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