Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:27:14 (2500259): wrapper (7.7.26015): starting
17:27:14 (2500259): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 17:27:14] Arguments: --nthreads 4
[2025-11-26 17:27:14] Threads: 4
[2025-11-26 17:27:14] Checking for CVMFS
[2025-11-26 17:27:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:27:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:27:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:27:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:27:15] 2.9.2.0 849437 11457 113724 153326 1 81 31724432 36864001 0 130560 1 4571733 99.936 577228 834 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 17:27:15] CVMFS is ok
[2025-11-26 17:27:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:27:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:27:15] Further information can be found at the LHC@home message board.
[2025-11-26 17:27:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:27:15] Checking for apptainer binary...
[2025-11-26 17:27:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:27:15] Running /usr/bin/apptainer --version
[2025-11-26 17:27:15] apptainer version 1.4.1-1.1
[2025-11-26 17:27:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:27:15] iaxoA393
[2025-11-26 17:27:15] apptainer works
[2025-11-26 17:27:15] Set ATHENA_PROC_NUMBER=4
[2025-11-26 17:27:15] Set ATHENA_CORE_NUMBER=4
[2025-11-26 17:27:15] Starting ATLAS job with PandaID=6895354834
[2025-11-26 17:27:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:20:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:20:23] 2025-11-26 23:19:50,860 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:20:23] 2025-11-26 23:19:50,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:20:23] 2025-11-26 23:19:50,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:20:23] 2025-11-26 23:19:50,860 | INFO     | job 6895354834 has completed (purged errors)
[2025-11-27 00:20:23] 2025-11-26 23:19:50,860 | INFO     | overall cleanup function is called
[2025-11-27 00:20:23] 2025-11-26 23:19:51,405 | INFO     | PID=2504049 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:20:23] 2025-11-26 23:19:51,869 | INFO     | --- collectZombieJob: --- 10, [2510654]
[2025-11-27 00:20:23] 2025-11-26 23:19:51,869 | INFO     | zombie collector waiting for pid 2510654
[2025-11-27 00:20:23] 2025-11-26 23:19:51,869 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:20:23] 2025-11-26 23:19:51,869 | INFO     | collected zombie processes
[2025-11-27 00:20:23] 2025-11-26 23:19:51,869 | INFO     | will attempt to kill all subprocesses of pid=2510654
[2025-11-27 00:20:23] 2025-11-26 23:19:51,912 | INFO     | process IDs to be killed: [2510654] (in reverse order)
[2025-11-27 00:20:23] 2025-11-26 23:19:51,944 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:20:23] 2025-11-26 23:19:51,944 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:20:23] 2025-11-26 23:19:51,946 | INFO     | did not find any defunct processes belonging to 2510654
[2025-11-27 00:20:23] 2025-11-26 23:19:51,947 | INFO     | did not find any defunct processes belonging to 2510654
[2025-11-27 00:20:23] 2025-11-26 23:19:51,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:20:23] 2025-11-26 23:19:51,948 | INFO     | ready for new job
[2025-11-27 00:20:23] 2025-11-26 23:19:51,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:20:23] 2025-11-26 23:19:51,949 | INFO     | ***************************************
[2025-11-27 00:20:23] 2025-11-26 23:19:51,949 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:20:23] 2025-11-26 23:19:51,949 | INFO     | ***************************************
[2025-11-27 00:20:23] 2025-11-26 23:19:51,949 | INFO     | 
[2025-11-27 00:20:23] 2025-11-26 23:19:51,950 | INFO     | architecture information:
[2025-11-27 00:20:23] 2025-11-26 23:19:51,950 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:20:23] 2025-11-26 23:19:51,963 | INFO     | cat /etc/os-release:
[2025-11-27 00:20:23] NAME="CentOS Linux"
[2025-11-27 00:20:23] VERSION="7 (Core)"
[2025-11-27 00:20:23] ID="centos"
[2025-11-27 00:20:23] ID_LIKE="rhel fedora"
[2025-11-27 00:20:23] VERSION_ID="7"
[2025-11-27 00:20:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:20:23] ANSI_COLOR="0;31"
[2025-11-27 00:20:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:20:23] HOME_URL="https://www.centos.org/"
[2025-11-27 00:20:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:20:23] 
[2025-11-27 00:20:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:20:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:20:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:20:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:20:23] 
[2025-11-27 00:20:23] 2025-11-26 23:19:51,963 | INFO     | ***************************************
[2025-11-27 00:20:23] 2025-11-26 23:19:52,466 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 00:20:23] 2025-11-26 23:19:52,482 | INFO     | sufficient remaining disk space (324500717568 B)
[2025-11-27 00:20:23] 2025-11-26 23:19:52,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:20:23] 2025-11-26 23:19:52,482 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:20:23] 2025-11-26 23:19:52,482 | INFO     | update_server=False
[2025-11-27 00:20:23] 2025-11-26 23:19:52,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:20:23] 2025-11-26 23:19:52,482 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:20:23] 2025-11-26 23:19:52,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:20:23] 2025-11-26 23:19:52,483 | INFO     | aborting loop
[2025-11-27 00:20:23] 2025-11-26 23:19:52,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:20:23] 2025-11-26 23:19:53,139 | INFO     | all data control threads have been joined
[2025-11-27 00:20:23] 2025-11-26 23:19:53,297 | INFO     | all payload control threads have been joined
[2025-11-27 00:20:23] 2025-11-26 23:19:53,377 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:20:23] 2025-11-26 23:19:53,488 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:53,488 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:53,489 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:53,611 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,027 | INFO     | all job control threads have been joined
[2025-11-27 00:20:23] 2025-11-26 23:19:54,145 | INFO     | [data] control thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,208 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,239 | INFO     | [job] validate thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,303 | INFO     | [payload] control thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,312 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,488 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,845 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,868 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:54,987 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:55,033 | INFO     | [job] control thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:19:55,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:20:23] 2025-11-26 23:19:59,566 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:20:02,971 | INFO     | job.realtimelogging is not enabled
[2025-11-27 00:20:23] 2025-11-26 23:20:03,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:20:23] 2025-11-26 23:20:04,381 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638482818880)>', '<ExcThread(monitor, started 140637613577984)>']
[2025-11-27 00:20:23] 2025-11-26 23:20:09,407 | INFO     | all workflow threads have been joined
[2025-11-27 00:20:23] 2025-11-26 23:20:09,407 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:20:23] 2025-11-26 23:20:09,407 | INFO     | traces error code: 0
[2025-11-27 00:20:23] 2025-11-26 23:20:09,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:20:23] 2025-11-26 23:20:23,530 | INFO     | PID=2504049 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:20:23] 2025-11-26 23:20:23,530 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:20:23] 2025-11-26 23:20:23,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:20:23] 2025-11-26 23:20:23,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:20:23] 2025-11-26 23:20:23,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:20:23] 2025-11-26 23:20:23,530 | INFO     | [monitor] control thread has ended
[2025-11-27 00:20:23] 2025-11-26 23:20:23,595 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:20:23] 2025-11-26 23:20:23,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:20:23] 2025-11-26 23:20:23,603 [wrapper] pilotpid: 2504049
[2025-11-27 00:20:23] 2025-11-26 23:20:23,606 [wrapper] Pilot exit status: 0
[2025-11-27 00:20:23] 2025-11-26 23:20:23,617 [wrapper] pandaids: 6895354834
[2025-11-27 00:20:23] 2025-11-26 23:20:23,638 [wrapper] cleanup supervisor_pilot 2555547 2504050
[2025-11-27 00:20:23] 2025-11-26 23:20:23,642 [wrapper] Test setup, not cleaning
[2025-11-27 00:20:23] 2025-11-26 23:20:23,645 [wrapper] apfmon messages muted
[2025-11-27 00:20:23] 2025-11-26 23:20:23,649 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:20:23] 2025-11-26 23:20:23,653 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:20:23]  *** Error codes and diagnostics ***
[2025-11-27 00:20:23]     "exeErrorCode": 0,
[2025-11-27 00:20:23]     "exeErrorDiag": "",
[2025-11-27 00:20:23]     "pilotErrorCode": 0,
[2025-11-27 00:20:23]     "pilotErrorDiag": "",
[2025-11-27 00:20:23]  *** Listing of results directory ***
[2025-11-27 00:20:23] total 1313820
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:41 queuedata.json
[2025-11-27 00:20:23] -rwx------ 1 boinc boinc     36292 Nov 23 06:42 runpilot2-wrapper.sh
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:20:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:27 run_atlas
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:27 job.xml
[2025-11-27 00:20:23] -rw-r--r-- 2 boinc boinc 409098234 Nov 26 17:27 EVNT.47483658._000637.pool.root.1
[2025-11-27 00:20:23] -rw-r--r-- 2 boinc boinc    590097 Nov 26 17:27 input.tar.gz
[2025-11-27 00:20:23] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:27 start_atlas.sh
[2025-11-27 00:20:23] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:27 shared
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:27 boinc_setup_complete
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc      6373 Nov 26 17:27 init_data.xml
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:27 boinc_lockfile
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc      2786 Nov 26 17:27 pandaJob.out
[2025-11-27 00:20:23] -rw------- 1 boinc boinc    991855 Nov 26 17:27 agis_schedconf.cvmfs.json
[2025-11-27 00:20:23] drwx------ 5 boinc boinc      4096 Nov 26 17:27 pilot3
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc       532 Nov 27 00:15 boinc_task_state.xml
[2025-11-27 00:20:23] -rw------- 1 boinc boinc 922862490 Nov 27 00:19 HITS.47556137._006329.pool.root.1
[2025-11-27 00:20:23] -rw------- 1 boinc boinc        95 Nov 27 00:19 pilot_heartbeat.json
[2025-11-27 00:20:23] -rw------- 1 boinc boinc      1031 Nov 27 00:19 memory_monitor_summary.json
[2025-11-27 00:20:23] -rw------- 1 boinc boinc   1516240 Nov 27 00:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:20:23] -rw------- 1 boinc boinc   1256652 Nov 27 00:19 log.47556137._006329.job.log.tgz.1
[2025-11-27 00:20:23] -rw------- 1 boinc boinc      8584 Nov 27 00:19 heartbeat.json
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc      8192 Nov 27 00:20 boinc_mmap_file
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc        28 Nov 27 00:20 wrapper_checkpoint.txt
[2025-11-27 00:20:23] -rw------- 1 boinc boinc       747 Nov 27 00:20 pilotlog.txt
[2025-11-27 00:20:23] -rw------- 1 boinc boinc   3489747 Nov 27 00:20 log.47556137._006329.job.log.1
[2025-11-27 00:20:23] -rw------- 1 boinc boinc       353 Nov 27 00:20 output.list
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc       620 Nov 27 00:20 runtime_log
[2025-11-27 00:20:23] -rw------- 1 boinc boinc   4761600 Nov 27 00:20 result.tar.gz
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc      8908 Nov 27 00:20 runtime_log.err
[2025-11-27 00:20:23] -rw------- 1 boinc boinc       667 Nov 27 00:20 dUhNDmg2Hh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0RIKDmKPyJzn.diag
[2025-11-27 00:20:23] -rw-r--r-- 1 boinc boinc     11653 Nov 27 00:20 stderr.txt
[2025-11-27 00:20:23] HITS file was successfully produced:
[2025-11-27 00:20:23] -rw------- 1 boinc boinc 922862490 Nov 27 00:19 shared/HITS.pool.root.1
[2025-11-27 00:20:23]  *** Contents of shared directory: ***
[2025-11-27 00:20:23] total 1306004
[2025-11-27 00:20:23] -rw-r--r-- 2 boinc boinc 409098234 Nov 26 17:27 ATLAS.root_0
[2025-11-27 00:20:23] -rw-r--r-- 2 boinc boinc    590097 Nov 26 17:27 input.tar.gz
[2025-11-27 00:20:23] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:27 start_atlas.sh
[2025-11-27 00:20:23] -rw------- 1 boinc boinc 922862490 Nov 27 00:19 HITS.pool.root.1
[2025-11-27 00:20:23] -rw------- 1 boinc boinc   4761600 Nov 27 00:20 result.tar.gz
00:20:25 (2500259): run_atlas exited; CPU time 96831.797580
00:20:25 (2500259): called boinc_finish(0)

</stderr_txt>
]]>

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