Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:54:46 (524440): wrapper (7.7.26015): starting
11:54:46 (524440): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 11:54:46] Arguments: --nthreads 8
[2025-11-24 11:54:46] Threads: 8
[2025-11-24 11:54:46] Checking for CVMFS
[2025-11-24 11:54:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:54:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:54:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:54:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:54:49] 2.13.2.0 11163 34691 271984 153252 2 95 25687584 40960001 11794 16776704 0 30170128 99.640 23334862 36449 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 11:54:49] CVMFS is ok
[2025-11-24 11:54:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:54:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:54:49] Further information can be found at the LHC@home message board.
[2025-11-24 11:54:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:54:49] Checking for apptainer binary...
[2025-11-24 11:54:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:54:49] Running /usr/bin/apptainer --version
[2025-11-24 11:54:49] apptainer version 1.4.4-1.el9
[2025-11-24 11:54:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:54:49] c-210-35-1.aglt2.org
[2025-11-24 11:54:49] apptainer works
[2025-11-24 11:54:49] Set ATHENA_PROC_NUMBER=8
[2025-11-24 11:54:49] Set ATHENA_CORE_NUMBER=8
[2025-11-24 11:54:49] Starting ATLAS job with PandaID=6893882175
[2025-11-24 11:54:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:37:01]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:37:02] 2025-11-25 20:36:16,539 | INFO     | time since job start (99628s) is within the limit (172800.0s)
[2025-11-25 15:37:02] 2025-11-25 20:36:16,641 | INFO     | monitor loop #6218: job 0:6893882175 is in state 'finished'
[2025-11-25 15:37:02] 2025-11-25 20:36:16,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:37:02] 2025-11-25 20:36:18,563 | INFO     | time since job start (99630s) is within the limit (172800.0s)
[2025-11-25 15:37:02] 2025-11-25 20:36:19,156 | INFO     | monitor loop #6219: job 0:6893882175 is in state 'finished'
[2025-11-25 15:37:02] 2025-11-25 20:36:19,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:37:02] 2025-11-25 20:36:20,594 | INFO     | time since job start (99632s) is within the limit (172800.0s)
[2025-11-25 15:37:02] 2025-11-25 20:36:21,673 | INFO     | monitor loop #6220: job 0:6893882175 is in state 'finished'
[2025-11-25 15:37:02] 2025-11-25 20:36:21,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:37:02] 2025-11-25 20:36:22,612 | INFO     | time since job start (99634s) is within the limit (172800.0s)
[2025-11-25 15:37:02] 2025-11-25 20:36:24,223 | INFO     | monitor loop #6221: job 0:6893882175 is in state 'finished'
[2025-11-25 15:37:02] 2025-11-25 20:36:24,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:37:02] 2025-11-25 20:36:25,417 | INFO     | PID=528371 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 15:37:02] 2025-11-25 20:36:25,417 | INFO     | .. there are 12 such processes running
[2025-11-25 15:37:02] 2025-11-25 20:36:26,356 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 15:37:02] 2025-11-25 20:36:26,367 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2767.0856785714277
[2025-11-25 15:37:02] 2025-11-25 20:36:26,404 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893882175/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:37:02] 2025-11-25 20:36:26,415 | INFO     | extracted standard info from prmon json
[2025-11-25 15:37:02] 2025-11-25 20:36:26,416 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:37:02] 2025-11-25 20:36:26,416 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:37:02] 2025-11-25 20:36:26,476 | INFO     | time since job start (99638s) is within the limit (172800.0s)
[2025-11-25 15:37:02] 2025-11-25 20:36:26,541 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:37:02] 2025-11-25 20:36:26,545 | INFO     | sum of square deviations: 1345209224118.5735
[2025-11-25 15:37:02] 2025-11-25 20:36:26,747 | INFO     | sum of deviations: 2411821517135.061
[2025-11-25 15:37:02] 2025-11-25 20:36:26,748 | INFO     | mean x: 1764053208.1091354
[2025-11-25 15:37:02] 2025-11-25 20:36:26,748 | INFO     | mean y: 3000184.982832618
[2025-11-25 15:37:02] 2025-11-25 20:36:26,748 | INFO     | intersect: -3159765434.2289243
[2025-11-25 15:37:02] 2025-11-25 20:36:26,755 | INFO     | chi2: 23.825454821842673
[2025-11-25 15:37:02] 2025-11-25 20:36:26,757 | INFO     | sum of square deviations: 1332876585435.1582
[2025-11-25 15:37:02] 2025-11-25 20:36:26,764 | INFO     | monitor loop #6222: job 0:6893882175 is in state 'finished'
[2025-11-25 15:37:02] 2025-11-25 20:36:26,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:37:02] 2025-11-25 20:36:26,797 | INFO     | sum of deviations: 2966801656932.237
[2025-11-25 15:37:02] 2025-11-25 20:36:26,798 | INFO     | mean x: 1764053055.6248462
[2025-11-25 15:37:02] 2025-11-25 20:36:26,798 | INFO     | mean y: 3007045.929889299
[2025-11-25 15:37:02] 2025-11-25 20:36:26,798 | INFO     | intersect: -3923534680.0885797
[2025-11-25 15:37:02] 2025-11-25 20:36:26,800 | INFO     | chi2: 20.674564621667507
[2025-11-25 15:37:02] 2025-11-25 20:36:26,800 | INFO     | current chi2=20.674564621667507 (change=13.22489003352203 %)
[2025-11-25 15:37:02] 2025-11-25 20:36:26,800 | INFO     | right removable region: 1625
[2025-11-25 15:37:02] 2025-11-25 20:36:26,802 | INFO     | sum of square deviations: 1332871502305.1555
[2025-11-25 15:37:02] 2025-11-25 20:36:26,982 | INFO     | sum of deviations: 1811297877522.3967
[2025-11-25 15:37:02] 2025-11-25 20:36:26,982 | INFO     | mean x: 1764053360.6248462
[2025-11-25 15:37:02] 2025-11-25 20:36:26,982 | INFO     | mean y: 3007606.5498154983
[2025-11-25 15:37:02] 2025-11-25 20:36:26,982 | INFO     | intersect: -2394242317.700197
[2025-11-25 15:37:02] 2025-11-25 20:36:26,984 | INFO     | chi2: 20.65635345222361
[2025-11-25 15:37:02] 2025-11-25 20:36:26,985 | INFO     | current chi2=20.65635345222361 (change=13.301325801821415 %)
[2025-11-25 15:37:02] 2025-11-25 20:36:26,989 | INFO     | left removable region: 10
[2025-11-25 15:37:02] 2025-11-25 20:36:26,991 | INFO     | sum of square deviations: 1306001094442.6787
[2025-11-25 15:37:02] 2025-11-25 20:36:27,077 | INFO     | sum of deviations: 2233166080042.315
[2025-11-25 15:37:02] 2025-11-25 20:36:27,077 | INFO     | mean x: 1764053330.156037
[2025-11-25 15:37:02] 2025-11-25 20:36:27,077 | INFO     | mean y: 3018786.717027864
[2025-11-25 15:37:02] 2025-11-25 20:36:27,077 | INFO     | intersect: -3013383019.5703197
[2025-11-25 15:37:02] 2025-11-25 20:36:27,083 | INFO     | chi2: 16.39850626528124
[2025-11-25 15:37:02] 2025-11-25 20:36:27,084 | INFO     | current memory leak: 1.71 B/s (using 1615 data points, chi2=16.40)
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | could have reported an average CPU frequency of 2793 MHz (58 samples)
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | ..............................
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . Timing measurements:
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . get job = 0 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . initial setup = 5 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . payload setup = 44 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . stage-in = 0 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . payload execution = 99477 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . stage-out = 9 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | . log creation = 3 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,086 | INFO     | ..............................
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | 
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | job summary report
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | --------------------------------------------------
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | PanDA job id: 6893882175
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | task id: 47523449
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | errors: (none)
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | pilot state: finished 
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | transexitcode: 0
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | exeerrorcode: 0
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | exeerrordiag: 
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | exitcode: 0
[2025-11-25 15:37:02] 2025-11-25 20:36:27,286 | INFO     | exitmsg: OK
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | cpuconsumptiontime: 234067 s
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | nevents: 1000
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | neventsw: 0
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | pid: 536297
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | pgrp: 536297
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | corecount: 8
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | event service: False
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | sizes: {0: 2283482, 2: 2284083, 3: 2284195, 4: 2284394, 15: 2284394, 26: 2284422, 36: 2284840, 37: 2284868, 99524: 2357550, 99533: 2366549, 99535: 2366605, 99573: 
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | --------------------------------------------------
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | 
[2025-11-25 15:37:02] 2025-11-25 20:36:27,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 15:37:02] 2025-11-25 20:36:27,342 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | job 6893882175 has completed (purged errors)
[2025-11-25 15:37:02] 2025-11-25 20:36:27,344 | INFO     | overall cleanup function is called
[2025-11-25 15:37:02] 2025-11-25 20:36:28,374 | INFO     | --- collectZombieJob: --- 10, [536297]
[2025-11-25 15:37:02] 2025-11-25 20:36:28,374 | INFO     | zombie collector waiting for pid 536297
[2025-11-25 15:37:02] 2025-11-25 20:36:28,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:37:02] 2025-11-25 20:36:28,374 | INFO     | collected zombie processes
[2025-11-25 15:37:02] 2025-11-25 20:36:28,375 | INFO     | will attempt to kill all subprocesses of pid=536297
[2025-11-25 15:37:02] 2025-11-25 20:36:29,484 | INFO     | process IDs to be killed: [536297] (in reverse order)
[2025-11-25 15:37:02] 2025-11-25 20:36:29,633 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:37:02] 2025-11-25 20:36:29,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:37:02] 2025-11-25 20:36:29,702 | INFO     | did not find any defunct processes belonging to 536297
[2025-11-25 15:37:02] 2025-11-25 20:36:29,724 | INFO     | did not find any defunct processes belonging to 536297
[2025-11-25 15:37:02] 2025-11-25 20:36:29,726 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:37:02] 2025-11-25 20:36:29,726 | INFO     | ready for new job
[2025-11-25 15:37:02] 2025-11-25 20:36:29,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:37:02] 2025-11-25 20:36:29,742 | INFO     | ***************************************
[2025-11-25 15:37:02] 2025-11-25 20:36:29,742 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:37:02] 2025-11-25 20:36:29,742 | INFO     | ***************************************
[2025-11-25 15:37:02] 2025-11-25 20:36:29,742 | INFO     | 
[2025-11-25 15:37:02] 2025-11-25 20:36:29,750 | INFO     | architecture information:
[2025-11-25 15:37:02] 2025-11-25 20:36:29,750 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:37:02] 2025-11-25 20:36:29,797 | INFO     | cat /etc/os-release:
[2025-11-25 15:37:02] NAME="CentOS Linux"
[2025-11-25 15:37:02] VERSION="7 (Core)"
[2025-11-25 15:37:02] ID="centos"
[2025-11-25 15:37:02] ID_LIKE="rhel fedora"
[2025-11-25 15:37:02] VERSION_ID="7"
[2025-11-25 15:37:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:37:02] ANSI_COLOR="0;31"
[2025-11-25 15:37:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:37:02] HOME_URL="https://www.centos.org/"
[2025-11-25 15:37:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:37:02] 
[2025-11-25 15:37:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:37:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:37:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:37:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:37:02] 
[2025-11-25 15:37:02] 2025-11-25 20:36:29,798 | INFO     | ***************************************
[2025-11-25 15:37:02] 2025-11-25 20:36:30,301 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 15:37:02] 2025-11-25 20:36:30,400 | INFO     | sufficient remaining disk space (69728206848 B)
[2025-11-25 15:37:02] 2025-11-25 20:36:30,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:37:02] 2025-11-25 20:36:30,401 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:37:02] 2025-11-25 20:36:30,401 | INFO     | update_server=False
[2025-11-25 15:37:02] 2025-11-25 20:36:30,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:37:02] 2025-11-25 20:36:30,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:37:02] 2025-11-25 20:36:30,402 | INFO     | aborting loop
[2025-11-25 15:37:02] 2025-11-25 20:36:30,736 | INFO     | all data control threads have been joined
[2025-11-25 15:37:02] 2025-11-25 20:36:30,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:37:02] 2025-11-25 20:36:30,962 | INFO     | all payload control threads have been joined
[2025-11-25 15:37:02] 2025-11-25 20:36:31,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:37:02] 2025-11-25 20:36:31,406 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:31,408 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:31,612 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:31,742 | INFO     | [data] control thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:31,968 | INFO     | [payload] control thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,062 | INFO     | all job control threads have been joined
[2025-11-25 15:37:02] 2025-11-25 20:36:32,084 | INFO     | [job] validate thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,084 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,085 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,206 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:37:02] 2025-11-25 20:36:32,781 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,876 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:32,979 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:33,068 | INFO     | [job] control thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:33,329 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:35,394 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:37:02] 2025-11-25 20:36:48,321 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:37:02] 2025-11-25 20:36:49,774 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139696669206336)>', '<ExcThread(monitor, started 139696311080704)>']
[2025-11-25 15:37:02] 2025-11-25 20:36:54,800 | INFO     | all workflow threads have been joined
[2025-11-25 15:37:02] 2025-11-25 20:36:54,800 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:37:02] 2025-11-25 20:36:54,801 | INFO     | traces error code: 0
[2025-11-25 15:37:02] 2025-11-25 20:36:54,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:37:02] 2025-11-25 20:37:00,595 | INFO     | PID=528371 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 15:37:02] 2025-11-25 20:37:00,601 | INFO     | .. there are 12 such processes running
[2025-11-25 15:37:02] 2025-11-25 20:37:00,602 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:37:02] 2025-11-25 20:37:00,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:37:02] 2025-11-25 20:37:00,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:37:02] 2025-11-25 20:37:00,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:37:02] 2025-11-25 20:37:00,602 | INFO     | [monitor] control thread has ended
[2025-11-25 15:37:02] 2025-11-25 20:37:00,832 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:37:02] 2025-11-25 20:37:00,864 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:37:02] 2025-11-25 20:37:00,872 [wrapper] pilotpid: 528371
[2025-11-25 15:37:02] 2025-11-25 20:37:00,875 [wrapper] Pilot exit status: 0
[2025-11-25 15:37:02] 2025-11-25 20:37:00,985 [wrapper] pandaids: 6893882175
[2025-11-25 15:37:02] 2025-11-25 20:37:01,122 [wrapper] cleanup supervisor_pilot 3092001 528372
[2025-11-25 15:37:02] 2025-11-25 20:37:01,146 [wrapper] Test setup, not cleaning
[2025-11-25 15:37:02] 2025-11-25 20:37:01,171 [wrapper] apfmon messages muted
[2025-11-25 15:37:02] 2025-11-25 20:37:01,195 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:37:02] 2025-11-25 20:37:01,211 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:37:02]  *** Error codes and diagnostics ***
[2025-11-25 15:37:02]     "exeErrorCode": 0,
[2025-11-25 15:37:02]     "exeErrorDiag": "",
[2025-11-25 15:37:02]     "pilotErrorCode": 0,
[2025-11-25 15:37:02]     "pilotErrorDiag": "",
[2025-11-25 15:37:02]  *** Listing of results directory ***
[2025-11-25 15:37:02] total 1336492
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 15:47 queuedata.json
[2025-11-25 15:37:02] -rwx------. 1 boincer umatlas     36292 Nov 20 15:48 runpilot2-wrapper.sh
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas       100 Nov 24 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:37:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 11:54 run_atlas
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas       105 Nov 24 11:54 job.xml
[2025-11-25 15:37:02] -rw-r--r--. 2 boincer umatlas 409790221 Nov 24 11:54 EVNT.47493127._000897.pool.root.1
[2025-11-25 15:37:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:54 start_atlas.sh
[2025-11-25 15:37:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 11:54 shared
[2025-11-25 15:37:02] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 11:54 input.tar.gz
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas         0 Nov 24 11:54 boinc_lockfile
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 11:54 pandaJob.out
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas        57 Nov 24 11:54 setup.sh.local
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas    991965 Nov 24 11:55 agis_schedconf.cvmfs.json
[2025-11-25 15:37:02] drwx------. 5 boincer umatlas      4096 Nov 24 11:55 pilot3
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas       533 Nov 25 14:45 boinc_task_state.xml
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas      6843 Nov 25 15:28 init_data.xml
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas 923933599 Nov 25 15:34 HITS.47523449._008966.pool.root.1
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas      1060 Nov 25 15:35 memory_monitor_summary.json
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas   1516240 Nov 25 15:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas   2613172 Nov 25 15:35 log.47523449._008966.job.log.tgz.1
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas        95 Nov 25 15:36 pilot_heartbeat.json
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas      8634 Nov 25 15:36 heartbeat.json
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 15:36 boinc_mmap_file
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas        29 Nov 25 15:36 wrapper_checkpoint.txt
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas       822 Nov 25 15:37 pilotlog.txt
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas  12849841 Nov 25 15:37 log.47523449._008966.job.log.1
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas       353 Nov 25 15:37 output.list
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas       620 Nov 25 15:37 runtime_log
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas  15482880 Nov 25 15:37 result.tar.gz
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas      9353 Nov 25 15:37 runtime_log.err
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas       662 Nov 25 15:37 oFyKDmtkQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNXIKDm5seXxn.diag
[2025-11-25 15:37:02] -rw-r--r--. 1 boincer umatlas     21888 Nov 25 15:37 stderr.txt
[2025-11-25 15:37:02] HITS file was successfully produced:
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas 923933599 Nov 25 15:34 shared/HITS.pool.root.1
[2025-11-25 15:37:02]  *** Contents of shared directory: ***
[2025-11-25 15:37:02] total 1318192
[2025-11-25 15:37:02] -rw-r--r--. 2 boincer umatlas 409790221 Nov 24 11:54 ATLAS.root_0
[2025-11-25 15:37:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:54 start_atlas.sh
[2025-11-25 15:37:02] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 11:54 input.tar.gz
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas 923933599 Nov 25 15:34 HITS.pool.root.1
[2025-11-25 15:37:02] -rw-------. 1 boincer umatlas  15482880 Nov 25 15:37 result.tar.gz
15:37:03 (524440): run_atlas exited; CPU time 235561.589962
15:37:03 (524440): called boinc_finish(0)

</stderr_txt>
]]>

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