Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:15:27 (22031): wrapper (7.7.26015): starting
07:15:27 (22031): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 07:15:27] Arguments: --nthreads 12
[2025-11-24 07:15:27] Threads: 12
[2025-11-24 07:15:27] Checking for CVMFS
[2025-11-24 07:15:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 07:15:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 07:15:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 07:15:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 07:15:28] 2.11.2.0 30551 114730 92888 153245 0 81 14757916 20275200 1 130560 0 50924765 99.915 6289255 28761 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 07:15:28] CVMFS is ok
[2025-11-24 07:15:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 07:15:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 07:15:28] Further information can be found at the LHC@home message board.
[2025-11-24 07:15:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 07:15:28] Checking for apptainer binary...
[2025-11-24 07:15:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 07:15:28] Running /usr/bin/apptainer --version
[2025-11-24 07:15:28] apptainer version 1.3.2-1.el7
[2025-11-24 07:15:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 07:15:29] c-205-16.aglt2.org
[2025-11-24 07:15:29] apptainer works
[2025-11-24 07:15:29] Set ATHENA_PROC_NUMBER=12
[2025-11-24 07:15:29] Set ATHENA_CORE_NUMBER=12
[2025-11-24 07:15:29] Starting ATLAS job with PandaID=6895355061
[2025-11-24 07:15:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:25:41]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:25:41] 2025-11-24 19:25:06,449 | INFO     | time since job start (25761s) is within the limit (172800.0s)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,032 | INFO     | monitor loop #1929: job 0:6895355061 is in state 'finished'
[2025-11-24 14:25:41] 2025-11-24 19:25:08,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,454 | INFO     | time since job start (25763s) is within the limit (172800.0s)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,512 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 14:25:41] 2025-11-24 19:25:08,516 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-24 14:25:41] 2025-11-24 19:25:08,518 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895355061/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,519 | INFO     | extracted standard info from prmon json
[2025-11-24 14:25:41] 2025-11-24 19:25:08,519 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:25:41] 2025-11-24 19:25:08,520 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:25:41] 2025-11-24 19:25:08,527 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:25:41] 2025-11-24 19:25:08,528 | INFO     | sum of square deviations: 23303233519.56396
[2025-11-24 14:25:41] 2025-11-24 19:25:08,532 | INFO     | sum of deviations: 355263902689.64923
[2025-11-24 14:25:41] 2025-11-24 19:25:08,532 | INFO     | mean x: 1763999415.706161
[2025-11-24 14:25:41] 2025-11-24 19:25:08,532 | INFO     | mean y: 3443027.9810426543
[2025-11-24 14:25:41] 2025-11-24 19:25:08,532 | INFO     | intersect: -26889190401.620274
[2025-11-24 14:25:41] 2025-11-24 19:25:08,533 | INFO     | chi2: 4.906983523304597
[2025-11-24 14:25:41] 2025-11-24 19:25:08,533 | INFO     | sum of square deviations: 22484723776.848934
[2025-11-24 14:25:41] 2025-11-24 19:25:08,537 | INFO     | sum of deviations: 502340312896.11536
[2025-11-24 14:25:41] 2025-11-24 19:25:08,537 | INFO     | mean x: 1763999263.2086332
[2025-11-24 14:25:41] 2025-11-24 19:25:08,537 | INFO     | mean y: 3470397.412470024
[2025-11-24 14:25:41] 2025-11-24 19:25:08,537 | INFO     | intersect: -39406750987.70103
[2025-11-24 14:25:41] 2025-11-24 19:25:08,538 | INFO     | chi2: 2.398030943489611
[2025-11-24 14:25:41] 2025-11-24 19:25:08,538 | INFO     | current chi2=2.398030943489611 (change=51.13024260014913 %)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,538 | INFO     | sum of square deviations: 21685584553.048546
[2025-11-24 14:25:41] 2025-11-24 19:25:08,542 | INFO     | sum of deviations: 509891630150.2138
[2025-11-24 14:25:41] 2025-11-24 19:25:08,542 | INFO     | mean x: 1763999110.7087379
[2025-11-24 14:25:41] 2025-11-24 19:25:08,542 | INFO     | mean y: 3471807.968446602
[2025-11-24 14:25:41] 2025-11-24 19:25:08,542 | INFO     | intersect: -41473315683.85695
[2025-11-24 14:25:41] 2025-11-24 19:25:08,543 | INFO     | chi2: 2.2855145665301655
[2025-11-24 14:25:41] 2025-11-24 19:25:08,543 | INFO     | current chi2=2.2855145665301655 (change=4.692031904964164 %)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,543 | INFO     | right removable region: 411
[2025-11-24 14:25:41] 2025-11-24 19:25:08,544 | INFO     | sum of square deviations: 22484670706.84893
[2025-11-24 14:25:41] 2025-11-24 19:25:08,547 | INFO     | sum of deviations: 225208445159.21594
[2025-11-24 14:25:41] 2025-11-24 19:25:08,547 | INFO     | mean x: 1763999568.2086332
[2025-11-24 14:25:41] 2025-11-24 19:25:08,548 | INFO     | mean y: 3467171.9400479617
[2025-11-24 14:25:41] 2025-11-24 19:25:08,548 | INFO     | intersect: -17664908104.589355
[2025-11-24 14:25:41] 2025-11-24 19:25:08,548 | INFO     | chi2: 2.7530679924570003
[2025-11-24 14:25:41] 2025-11-24 19:25:08,548 | INFO     | current chi2=2.7530679924570003 (change=43.89490041321857 %)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,549 | INFO     | sum of square deviations: 21685554601.46368
[2025-11-24 14:25:41] 2025-11-24 19:25:08,552 | INFO     | sum of deviations: 192031727377.20883
[2025-11-24 14:25:41] 2025-11-24 19:25:08,553 | INFO     | mean x: 1763999720.7063107
[2025-11-24 14:25:41] 2025-11-24 19:25:08,553 | INFO     | mean y: 3473496.150485437
[2025-11-24 14:25:41] 2025-11-24 19:25:08,553 | INFO     | intersect: -15617243598.042856
[2025-11-24 14:25:41] 2025-11-24 19:25:08,553 | INFO     | chi2: 2.6912295969655964
[2025-11-24 14:25:41] 2025-11-24 19:25:08,553 | INFO     | current chi2=2.6912295969655964 (change=2.246163031964048 %)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,553 | INFO     | left removable region: 20
[2025-11-24 14:25:41] 2025-11-24 19:25:08,554 | INFO     | sum of square deviations: 18535723097.381123
[2025-11-24 14:25:41] 2025-11-24 19:25:08,558 | INFO     | sum of deviations: 307080412197.6138
[2025-11-24 14:25:41] 2025-11-24 19:25:08,558 | INFO     | mean x: 1763999690.2122762
[2025-11-24 14:25:41] 2025-11-24 19:25:08,558 | INFO     | mean y: 3511218.8721227623
[2025-11-24 14:25:41] 2025-11-24 19:25:08,559 | INFO     | intersect: -29220584822.106342
[2025-11-24 14:25:41] 2025-11-24 19:25:08,559 | INFO     | chi2: 0.026395574245523457
[2025-11-24 14:25:41] 2025-11-24 19:25:08,559 | INFO     | current memory leak: 16.57 B/s (using 391 data points, chi2=0.03)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | could have reported an average CPU frequency of 2404 MHz (18 samples)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | ..............................
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | . Timing measurements:
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | . get job = 0 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | . initial setup = 2 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | . payload setup = 8 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | . stage-in = 0 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,560 | INFO     | . payload execution = 25724 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,561 | INFO     | . stage-out = 3 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,561 | INFO     | . log creation = 0 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,561 | INFO     | ..............................
[2025-11-24 14:25:41] 2025-11-24 19:25:08,994 | INFO     | 
[2025-11-24 14:25:41] 2025-11-24 19:25:08,994 | INFO     | job summary report
[2025-11-24 14:25:41] 2025-11-24 19:25:08,994 | INFO     | --------------------------------------------------
[2025-11-24 14:25:41] 2025-11-24 19:25:08,994 | INFO     | PanDA job id: 6895355061
[2025-11-24 14:25:41] 2025-11-24 19:25:08,994 | INFO     | task id: 47556137
[2025-11-24 14:25:41] 2025-11-24 19:25:08,994 | INFO     | errors: (none)
[2025-11-24 14:25:41] 2025-11-24 19:25:08,995 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:25:41] 2025-11-24 19:25:08,995 | INFO     | pilot state: finished 
[2025-11-24 14:25:41] 2025-11-24 19:25:08,995 | INFO     | transexitcode: 0
[2025-11-24 14:25:41] 2025-11-24 19:25:08,995 | INFO     | exeerrorcode: 0
[2025-11-24 14:25:41] 2025-11-24 19:25:08,995 | INFO     | exeerrordiag: 
[2025-11-24 14:25:41] 2025-11-24 19:25:08,995 | INFO     | exitcode: 0
[2025-11-24 14:25:41] 2025-11-24 19:25:08,996 | INFO     | exitmsg: OK
[2025-11-24 14:25:41] 2025-11-24 19:25:08,996 | INFO     | cpuconsumptiontime: 295949 s
[2025-11-24 14:25:41] 2025-11-24 19:25:08,996 | INFO     | nevents: 1000
[2025-11-24 14:25:41] 2025-11-24 19:25:08,996 | INFO     | neventsw: 0
[2025-11-24 14:25:41] 2025-11-24 19:25:08,996 | INFO     | pid: 32567
[2025-11-24 14:25:41] 2025-11-24 19:25:08,996 | INFO     | pgrp: 32567
[2025-11-24 14:25:41] 2025-11-24 19:25:08,997 | INFO     | corecount: 12
[2025-11-24 14:25:41] 2025-11-24 19:25:08,997 | INFO     | event service: False
[2025-11-24 14:25:41] 2025-11-24 19:25:08,997 | INFO     | sizes: {0: 2284138, 1: 2284337, 6: 2284599, 11: 2284627, 25735: 2321864, 25739: 2330858, 25740: 2331042, 25747: 2331288}
[2025-11-24 14:25:41] 2025-11-24 19:25:08,997 | INFO     | --------------------------------------------------
[2025-11-24 14:25:41] 2025-11-24 19:25:08,997 | INFO     | 
[2025-11-24 14:25:41] 2025-11-24 19:25:08,997 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 14:25:41] 2025-11-24 19:25:09,022 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,023 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,024 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:25:41] 2025-11-24 19:25:09,026 | INFO     | job 6895355061 has completed (purged errors)
[2025-11-24 14:25:41] 2025-11-24 19:25:09,026 | INFO     | overall cleanup function is called
[2025-11-24 14:25:41] 2025-11-24 19:25:10,042 | INFO     | --- collectZombieJob: --- 10, [32567]
[2025-11-24 14:25:41] 2025-11-24 19:25:10,043 | INFO     | zombie collector waiting for pid 32567
[2025-11-24 14:25:41] 2025-11-24 19:25:10,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:25:41] 2025-11-24 19:25:10,052 | INFO     | collected zombie processes
[2025-11-24 14:25:41] 2025-11-24 19:25:10,052 | INFO     | will attempt to kill all subprocesses of pid=32567
[2025-11-24 14:25:41] 2025-11-24 19:25:10,147 | INFO     | process IDs to be killed: [32567] (in reverse order)
[2025-11-24 14:25:41] 2025-11-24 19:25:10,202 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:25:41] 2025-11-24 19:25:10,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:25:41] 2025-11-24 19:25:10,205 | INFO     | did not find any defunct processes belonging to 32567
[2025-11-24 14:25:41] 2025-11-24 19:25:10,207 | INFO     | did not find any defunct processes belonging to 32567
[2025-11-24 14:25:41] 2025-11-24 19:25:10,210 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:25:41] 2025-11-24 19:25:10,210 | INFO     | ready for new job
[2025-11-24 14:25:41] 2025-11-24 19:25:10,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:25:41] 2025-11-24 19:25:10,213 | INFO     | ***************************************
[2025-11-24 14:25:41] 2025-11-24 19:25:10,213 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:25:41] 2025-11-24 19:25:10,213 | INFO     | ***************************************
[2025-11-24 14:25:41] 2025-11-24 19:25:10,213 | INFO     | 
[2025-11-24 14:25:41] 2025-11-24 19:25:10,214 | INFO     | architecture information:
[2025-11-24 14:25:41] 2025-11-24 19:25:10,214 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:25:41] 2025-11-24 19:25:10,229 | INFO     | cat /etc/os-release:
[2025-11-24 14:25:41] NAME="CentOS Linux"
[2025-11-24 14:25:41] VERSION="7 (Core)"
[2025-11-24 14:25:41] ID="centos"
[2025-11-24 14:25:41] ID_LIKE="rhel fedora"
[2025-11-24 14:25:41] VERSION_ID="7"
[2025-11-24 14:25:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:25:41] ANSI_COLOR="0;31"
[2025-11-24 14:25:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:25:41] HOME_URL="https://www.centos.org/"
[2025-11-24 14:25:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:25:41] 
[2025-11-24 14:25:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:25:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:25:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:25:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:25:41] 
[2025-11-24 14:25:41] 2025-11-24 19:25:10,230 | INFO     | ***************************************
[2025-11-24 14:25:41] 2025-11-24 19:25:10,733 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 14:25:41] 2025-11-24 19:25:10,750 | INFO     | sufficient remaining disk space (28382855168 B)
[2025-11-24 14:25:41] 2025-11-24 19:25:10,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:25:41] 2025-11-24 19:25:10,751 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:25:41] 2025-11-24 19:25:10,751 | INFO     | update_server=False
[2025-11-24 14:25:41] 2025-11-24 19:25:10,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:25:41] 2025-11-24 19:25:10,855 | INFO     | all data control threads have been joined
[2025-11-24 14:25:41] 2025-11-24 19:25:11,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:25:41] 2025-11-24 19:25:11,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:25:41] 2025-11-24 19:25:11,541 | INFO     | aborting loop
[2025-11-24 14:25:41] 2025-11-24 19:25:11,757 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:11,757 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:11,771 | INFO     | all payload control threads have been joined
[2025-11-24 14:25:41] 2025-11-24 19:25:11,857 | INFO     | all job control threads have been joined
[2025-11-24 14:25:41] 2025-11-24 19:25:11,861 | INFO     | [data] control thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,105 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,465 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,546 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,636 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,762 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:25:41] 2025-11-24 19:25:12,772 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,777 | INFO     | [payload] control thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,863 | INFO     | [job] control thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:12,957 | INFO     | [job] validate thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:13,158 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:13,314 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:13,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:25:41] 2025-11-24 19:25:14,657 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:16,765 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:25:41] 2025-11-24 19:25:27,102 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:25:41] 2025-11-24 19:25:27,295 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395041994560)>', '<ExcThread(monitor, started 140394092295936)>']
[2025-11-24 14:25:41] 2025-11-24 19:25:32,296 | INFO     | all workflow threads have been joined
[2025-11-24 14:25:41] 2025-11-24 19:25:32,296 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:25:41] 2025-11-24 19:25:32,305 | INFO     | traces error code: 0
[2025-11-24 14:25:41] 2025-11-24 19:25:32,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:25:41] 2025-11-24 19:25:41,658 | INFO     | PID=25722 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 14:25:41] 2025-11-24 19:25:41,659 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:25:41] 2025-11-24 19:25:41,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:25:41] 2025-11-24 19:25:41,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:25:41] 2025-11-24 19:25:41,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:25:41] 2025-11-24 19:25:41,659 | INFO     | [monitor] control thread has ended
[2025-11-24 14:25:41] 2025-11-24 19:25:41,750 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:25:41] 2025-11-24 19:25:41,754 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:25:41] 2025-11-24 19:25:41,758 [wrapper] pilotpid: 25722
[2025-11-24 14:25:41] 2025-11-24 19:25:41,761 [wrapper] Pilot exit status: 0
[2025-11-24 14:25:41] 2025-11-24 19:25:41,776 [wrapper] pandaids: 6895355061
[2025-11-24 14:25:41] 2025-11-24 19:25:41,814 [wrapper] cleanup supervisor_pilot 11555 25723
[2025-11-24 14:25:41] 2025-11-24 19:25:41,818 [wrapper] Test setup, not cleaning
[2025-11-24 14:25:41] 2025-11-24 19:25:41,822 [wrapper] apfmon messages muted
[2025-11-24 14:25:41] 2025-11-24 19:25:41,826 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:25:41] 2025-11-24 19:25:41,830 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:25:41]  *** Error codes and diagnostics ***
[2025-11-24 14:25:41]     "exeErrorCode": 0,
[2025-11-24 14:25:41]     "exeErrorDiag": "",
[2025-11-24 14:25:41]     "pilotErrorCode": 0,
[2025-11-24 14:25:41]     "pilotErrorDiag": "",
[2025-11-24 14:25:41]  *** Listing of results directory ***
[2025-11-24 14:25:41] total 1313568
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 00:21 pilot3.tar.gz
[2025-11-24 14:25:41] -rwx------ 1 boincer umatlas     36292 Nov 23 00:45 runpilot2-wrapper.sh
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 00:45 queuedata.json
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas       100 Nov 24 07:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:25:41] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 07:15 run_atlas
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas       105 Nov 24 07:15 job.xml
[2025-11-24 14:25:41] -rw-r--r-- 2 boincer umatlas 411151028 Nov 24 07:15 EVNT.47483658._000639.pool.root.1
[2025-11-24 14:25:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 07:15 start_atlas.sh
[2025-11-24 14:25:41] drwxrwx--x 2 boincer umatlas      4096 Nov 24 07:15 shared
[2025-11-24 14:25:41] -rw-r--r-- 2 boincer umatlas    590097 Nov 24 07:15 input.tar.gz
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas         0 Nov 24 07:15 boinc_lockfile
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 07:15 pandaJob.out
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas        57 Nov 24 07:15 setup.sh.local
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas    989803 Nov 24 07:15 agis_schedconf.cvmfs.json
[2025-11-24 14:25:41] drwx------ 5 boincer umatlas      4096 Nov 24 07:15 pilot3
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas       532 Nov 24 14:17 boinc_task_state.xml
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas      5956 Nov 24 14:18 init_data.xml
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas 918476650 Nov 24 14:24 HITS.47556137._006346.pool.root.1
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas      1064 Nov 24 14:24 memory_monitor_summary.json
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas        95 Nov 24 14:24 pilot_heartbeat.json
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas   1516227 Nov 24 14:24 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas   2171031 Nov 24 14:25 log.47556137._006346.job.log.tgz.1
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas      8666 Nov 24 14:25 heartbeat.json
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 14:25 boinc_mmap_file
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas        29 Nov 24 14:25 wrapper_checkpoint.txt
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas       745 Nov 24 14:25 pilotlog.txt
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas   3606236 Nov 24 14:25 log.47556137._006346.job.log.1
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas       353 Nov 24 14:25 output.list
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas       620 Nov 24 14:25 runtime_log
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas   5795840 Nov 24 14:25 result.tar.gz
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas       670 Nov 24 14:25 SqnMDmX5Hh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6RIKDm98IZHn.diag
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 14:25 runtime_log.err
[2025-11-24 14:25:41] -rw-r--r-- 1 boincer umatlas     21329 Nov 24 14:25 stderr.txt
[2025-11-24 14:25:41] HITS file was successfully produced:
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas 918476650 Nov 24 14:24 shared/HITS.pool.root.1
[2025-11-24 14:25:41]  *** Contents of shared directory: ***
[2025-11-24 14:25:41] total 1304728
[2025-11-24 14:25:41] -rw-r--r-- 2 boincer umatlas 411151028 Nov 24 07:15 ATLAS.root_0
[2025-11-24 14:25:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 07:15 start_atlas.sh
[2025-11-24 14:25:41] -rw-r--r-- 2 boincer umatlas    590097 Nov 24 07:15 input.tar.gz
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas 918476650 Nov 24 14:24 HITS.pool.root.1
[2025-11-24 14:25:41] -rw------- 1 boincer umatlas   5795840 Nov 24 14:25 result.tar.gz
14:25:43 (22031): run_atlas exited; CPU time 289228.181573
14:25:43 (22031): called boinc_finish(0)

</stderr_txt>
]]>

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