Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:35:24 (20753): wrapper (7.7.26015): starting
12:35:24 (20753): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 12:35:24] Arguments: --nthreads 8
[2025-11-26 12:35:24] Threads: 8
[2025-11-26 12:35:24] Checking for CVMFS
[2025-11-26 12:35:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:35:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:35:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:35:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:35:27] 2.11.2.0 14372 285143 138412 153320 3 85 16105503 25165824 1096 130560 10 137432916 99.882 82329870 2860 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 12:35:27] CVMFS is ok
[2025-11-26 12:35:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:35:27] Checking for apptainer binary...
[2025-11-26 12:35:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:35:27] Running /usr/bin/apptainer --version
[2025-11-26 12:35:27] apptainer version 1.3.2-1.el7
[2025-11-26 12:35:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:35:59] cg-vwn440.simple-grid.lan
[2025-11-26 12:35:59] apptainer works
[2025-11-26 12:35:59] Set ATHENA_PROC_NUMBER=8
[2025-11-26 12:35:59] Set ATHENA_CORE_NUMBER=8
[2025-11-26 12:35:59] Starting ATLAS job with PandaID=6895364654
[2025-11-26 12:35:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/31 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:00:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:00:52] 2025-11-27 07:00:13,007 | INFO     | this job has now completed (state=finished)
[2025-11-27 08:00:52] 2025-11-27 07:00:13,007 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 08:00:52] 2025-11-27 07:00:13,007 | INFO     | log transfer has been attempted: DONE
[2025-11-27 08:00:52] 2025-11-27 07:00:13,007 | INFO     | job 6895364654 has finished - writing final server update
[2025-11-27 08:00:52] 2025-11-27 07:00:13,007 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 08:00:52] 2025-11-27 07:00:13,009 | INFO     | executing command: lscpu
[2025-11-27 08:00:52] 2025-11-27 07:00:13,048 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 08:00:52] 2025-11-27 07:00:13,912 | INFO     | monitor loop #4739: job 0:6895364654 is in state 'finished'
[2025-11-27 08:00:52] 2025-11-27 07:00:13,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:00:52] 2025-11-27 07:00:14,479 | INFO     | time since job start (69577s) is within the limit (172800.0s)
[2025-11-27 08:00:52] 2025-11-27 07:00:16,415 | INFO     | monitor loop #4740: job 0:6895364654 is in state 'finished'
[2025-11-27 08:00:52] 2025-11-27 07:00:16,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:00:52] 2025-11-27 07:00:16,484 | INFO     | time since job start (69579s) is within the limit (172800.0s)
[2025-11-27 08:00:52] 2025-11-27 07:00:18,490 | INFO     | time since job start (69581s) is within the limit (172800.0s)
[2025-11-27 08:00:52] 2025-11-27 07:00:18,918 | INFO     | monitor loop #4741: job 0:6895364654 is in state 'finished'
[2025-11-27 08:00:52] 2025-11-27 07:00:18,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:00:52] 2025-11-27 07:00:19,902 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:00:52] 2025-11-27 07:00:19,904 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 08:00:52] 2025-11-27 07:00:19,905 | INFO     | using path: /var/lib/boinc/slots/31/PanDA_Pilot-6895364654/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:00:52] 2025-11-27 07:00:19,906 | INFO     | extracted standard info from prmon json
[2025-11-27 08:00:52] 2025-11-27 07:00:19,906 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:00:52] 2025-11-27 07:00:19,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:00:52] 2025-11-27 07:00:19,927 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:00:52] 2025-11-27 07:00:19,929 | INFO     | sum of square deviations: 448608446965.87305
[2025-11-27 08:00:52] 2025-11-27 07:00:19,966 | INFO     | sum of deviations: 3845889895674.783
[2025-11-27 08:00:52] 2025-11-27 07:00:19,966 | INFO     | mean x: 1764192298.98939
[2025-11-27 08:00:52] 2025-11-27 07:00:19,966 | INFO     | mean y: 2824459.398762157
[2025-11-27 08:00:52] 2025-11-27 07:00:19,966 | INFO     | intersect: -15121476883.118551
[2025-11-27 08:00:52] 2025-11-27 07:00:19,968 | INFO     | chi2: 23.147247392083912
[2025-11-27 08:00:52] 2025-11-27 07:00:19,969 | INFO     | sum of square deviations: 442685356263.4568
[2025-11-27 08:00:52] 2025-11-27 07:00:20,006 | INFO     | sum of deviations: 4228827322170.06
[2025-11-27 08:00:52] 2025-11-27 07:00:20,006 | INFO     | mean x: 1764192146.4937832
[2025-11-27 08:00:52] 2025-11-27 07:00:20,006 | INFO     | mean y: 2834321.1509769093
[2025-11-27 08:00:52] 2025-11-27 07:00:20,006 | INFO     | intersect: -16849911867.748901
[2025-11-27 08:00:52] 2025-11-27 07:00:20,008 | INFO     | chi2: 19.983235323135585
[2025-11-27 08:00:52] 2025-11-27 07:00:20,008 | INFO     | current chi2=19.983235323135585 (change=13.66906403752518 %)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,008 | INFO     | right removable region: 1125
[2025-11-27 08:00:52] 2025-11-27 07:00:20,010 | INFO     | sum of square deviations: 442684673673.4561
[2025-11-27 08:00:52] 2025-11-27 07:00:20,048 | INFO     | sum of deviations: 3360910407682.76
[2025-11-27 08:00:52] 2025-11-27 07:00:20,048 | INFO     | mean x: 1764192451.4937832
[2025-11-27 08:00:52] 2025-11-27 07:00:20,048 | INFO     | mean y: 2836944.8943161634
[2025-11-27 08:00:52] 2025-11-27 07:00:20,049 | INFO     | intersect: -13391104892.257536
[2025-11-27 08:00:52] 2025-11-27 07:00:20,050 | INFO     | chi2: 17.79799403959125
[2025-11-27 08:00:52] 2025-11-27 07:00:20,050 | INFO     | current chi2=17.79799403959125 (change=23.10967374169097 %)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,050 | INFO     | left removable region: 10
[2025-11-27 08:00:52] 2025-11-27 07:00:20,052 | INFO     | sum of square deviations: 429837217313.98553
[2025-11-27 08:00:52] 2025-11-27 07:00:20,087 | INFO     | sum of deviations: 3326620065970.6523
[2025-11-27 08:00:52] 2025-11-27 07:00:20,088 | INFO     | mean x: 1764192421.0035875
[2025-11-27 08:00:52] 2025-11-27 07:00:20,088 | INFO     | mean y: 2859501.586547085
[2025-11-27 08:00:52] 2025-11-27 07:00:20,088 | INFO     | intersect: -13650676468.652311
[2025-11-27 08:00:52] 2025-11-27 07:00:20,090 | INFO     | chi2: 9.975652436859077
[2025-11-27 08:00:52] 2025-11-27 07:00:20,090 | INFO     | current memory leak: 7.74 B/s (using 1115 data points, chi2=9.98)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,091 | INFO     | could have reported an average CPU frequency of 1999 MHz (39 samples)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | ..............................
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . Timing measurements:
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . get job = 0 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . initial setup = 13 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . payload setup = 196 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . stage-in = 0 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . payload execution = 69149 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . stage-out = 3 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | . log creation = 0 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,092 | INFO     | ..............................
[2025-11-27 08:00:52] 2025-11-27 07:00:20,203 | INFO     | 
[2025-11-27 08:00:52] 2025-11-27 07:00:20,204 | INFO     | job summary report
[2025-11-27 08:00:52] 2025-11-27 07:00:20,204 | INFO     | --------------------------------------------------
[2025-11-27 08:00:52] 2025-11-27 07:00:20,204 | INFO     | PanDA job id: 6895364654
[2025-11-27 08:00:52] 2025-11-27 07:00:20,204 | INFO     | task id: 47556137
[2025-11-27 08:00:52] 2025-11-27 07:00:20,204 | INFO     | errors: (none)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,204 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | pilot state: finished 
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | transexitcode: 0
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | exeerrorcode: 0
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | exeerrordiag: 
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | exitcode: 0
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | exitmsg: OK
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | cpuconsumptiontime: 309219 s
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | nevents: 1000
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | neventsw: 0
[2025-11-27 08:00:52] 2025-11-27 07:00:20,205 | INFO     | pid: 31281
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | pgrp: 31281
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | corecount: 8
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | event service: False
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | sizes: {0: 2283487, 1: 2284173, 2: 2284372, 13: 2284372, 24: 2284428, 34: 2284456, 45: 2284612, 56: 2284640, 66: 2284668, 77: 2284696, 88: 2284752, 99: 2285060, 10
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | --------------------------------------------------
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | 
[2025-11-27 08:00:52] 2025-11-27 07:00:20,206 | INFO     | executing command: ls -lF /var/lib/boinc/slots/31
[2025-11-27 08:00:52] 2025-11-27 07:00:20,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,259 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:00:52] 2025-11-27 07:00:20,260 | INFO     | job 6895364654 has completed (purged errors)
[2025-11-27 08:00:52] 2025-11-27 07:00:20,260 | INFO     | overall cleanup function is called
[2025-11-27 08:00:52] 2025-11-27 07:00:21,276 | INFO     | --- collectZombieJob: --- 10, [31281]
[2025-11-27 08:00:52] 2025-11-27 07:00:21,276 | INFO     | zombie collector waiting for pid 31281
[2025-11-27 08:00:52] 2025-11-27 07:00:21,276 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:00:52] 2025-11-27 07:00:21,276 | INFO     | collected zombie processes
[2025-11-27 08:00:52] 2025-11-27 07:00:21,277 | INFO     | will attempt to kill all subprocesses of pid=31281
[2025-11-27 08:00:52] 2025-11-27 07:00:21,344 | INFO     | process IDs to be killed: [31281] (in reverse order)
[2025-11-27 08:00:52] 2025-11-27 07:00:21,410 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:00:52] 2025-11-27 07:00:21,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:00:52] 2025-11-27 07:00:21,413 | INFO     | did not find any defunct processes belonging to 31281
[2025-11-27 08:00:52] 2025-11-27 07:00:21,414 | INFO     | did not find any defunct processes belonging to 31281
[2025-11-27 08:00:52] 2025-11-27 07:00:21,416 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:00:52] 2025-11-27 07:00:21,416 | INFO     | ready for new job
[2025-11-27 08:00:52] 2025-11-27 07:00:21,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:00:52] 2025-11-27 07:00:21,421 | INFO     | ***************************************
[2025-11-27 08:00:52] 2025-11-27 07:00:21,421 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:00:52] 2025-11-27 07:00:21,421 | INFO     | ***************************************
[2025-11-27 08:00:52] 2025-11-27 07:00:21,422 | INFO     | 
[2025-11-27 08:00:52] 2025-11-27 07:00:21,422 | INFO     | pilot is running in a VM
[2025-11-27 08:00:52] 2025-11-27 07:00:21,422 | INFO     | architecture information:
[2025-11-27 08:00:52] 2025-11-27 07:00:21,423 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:00:52] 2025-11-27 07:00:21,446 | INFO     | cat /etc/os-release:
[2025-11-27 08:00:52] NAME="CentOS Linux"
[2025-11-27 08:00:52] VERSION="7 (Core)"
[2025-11-27 08:00:52] ID="centos"
[2025-11-27 08:00:52] ID_LIKE="rhel fedora"
[2025-11-27 08:00:52] VERSION_ID="7"
[2025-11-27 08:00:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:00:52] ANSI_COLOR="0;31"
[2025-11-27 08:00:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:00:52] HOME_URL="https://www.centos.org/"
[2025-11-27 08:00:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:00:52] 
[2025-11-27 08:00:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:00:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:00:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:00:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:00:52] 
[2025-11-27 08:00:52] 2025-11-27 07:00:21,446 | INFO     | ***************************************
[2025-11-27 08:00:52] 2025-11-27 07:00:21,949 | INFO     | executing command: df -mP /var/lib/boinc/slots/31
[2025-11-27 08:00:52] 2025-11-27 07:00:21,988 | INFO     | sufficient remaining disk space (495657680896 B)
[2025-11-27 08:00:52] 2025-11-27 07:00:21,989 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:00:52] 2025-11-27 07:00:21,989 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:00:52] 2025-11-27 07:00:21,989 | INFO     | update_server=False
[2025-11-27 08:00:52] 2025-11-27 07:00:21,989 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:00:52] 2025-11-27 07:00:21,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:00:52] 2025-11-27 07:00:21,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:00:52] 2025-11-27 07:00:22,113 | INFO     | all data control threads have been joined
[2025-11-27 08:00:52] 2025-11-27 07:00:22,448 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:00:52] 2025-11-27 07:00:22,448 | INFO     | aborting loop
[2025-11-27 08:00:52] 2025-11-27 07:00:22,572 | INFO     | all job control threads have been joined
[2025-11-27 08:00:52] 2025-11-27 07:00:22,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:00:52] 2025-11-27 07:00:22,995 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:22,995 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,119 | INFO     | [data] control thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,240 | INFO     | all payload control threads have been joined
[2025-11-27 08:00:52] 2025-11-27 07:00:23,454 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,511 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,557 | INFO     | [job] validate thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,578 | INFO     | [job] control thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,629 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,810 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:23,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:24,026 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:24,066 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:24,246 | INFO     | [payload] control thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:24,337 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:24,964 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:25,996 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:00:52] 2025-11-27 07:00:37,205 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:00:52] 2025-11-27 07:00:37,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373971248960)>', '<ExcThread(monitor, started 140373506627328)>']
[2025-11-27 08:00:52] 2025-11-27 07:00:42,403 | INFO     | all workflow threads have been joined
[2025-11-27 08:00:52] 2025-11-27 07:00:42,403 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:00:52] 2025-11-27 07:00:42,404 | INFO     | traces error code: 0
[2025-11-27 08:00:52] 2025-11-27 07:00:42,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:00:52] 2025-11-27 07:00:51,578 | INFO     | PID=24493 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 08:00:52] 2025-11-27 07:00:51,578 | INFO     | .. there are 2 such processes running
[2025-11-27 08:00:52] 2025-11-27 07:00:51,579 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:00:52] 2025-11-27 07:00:51,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:00:52] 2025-11-27 07:00:51,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:00:52] 2025-11-27 07:00:51,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:00:52] 2025-11-27 07:00:51,579 | INFO     | [monitor] control thread has ended
[2025-11-27 08:00:52] 2025-11-27 07:00:51,712 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:00:52] 2025-11-27 07:00:51,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:00:52] 2025-11-27 07:00:51,727 [wrapper] pilotpid: 24493
[2025-11-27 08:00:52] 2025-11-27 07:00:51,739 [wrapper] Pilot exit status: 0
[2025-11-27 08:00:52] 2025-11-27 07:00:51,763 [wrapper] pandaids: 6895364654
[2025-11-27 08:00:52] 2025-11-27 07:00:51,816 [wrapper] cleanup supervisor_pilot 19443 24494
[2025-11-27 08:00:52] 2025-11-27 07:00:51,826 [wrapper] Test setup, not cleaning
[2025-11-27 08:00:52] 2025-11-27 07:00:51,834 [wrapper] apfmon messages muted
[2025-11-27 08:00:52] 2025-11-27 07:00:51,841 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:00:52] 2025-11-27 07:00:51,845 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:00:52]  *** Error codes and diagnostics ***
[2025-11-27 08:00:52]     "exeErrorCode": 0,
[2025-11-27 08:00:52]     "exeErrorDiag": "",
[2025-11-27 08:00:52]     "pilotErrorCode": 0,
[2025-11-27 08:00:52]     "pilotErrorDiag": "",
[2025-11-27 08:00:52]  *** Listing of results directory ***
[2025-11-27 08:00:52] total 1321388
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc    576529 Nov 23 17:03 pilot3.tar.gz
[2025-11-27 08:00:52] -rwx------. 1 boinc boinc     36292 Nov 23 17:08 runpilot2-wrapper.sh
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc      5112 Nov 23 17:08 queuedata.json
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc       100 Nov 26 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:00:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 12:35 run_atlas
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc       105 Nov 26 12:35 job.xml
[2025-11-27 08:00:52] -rw-r--r--. 2 boinc boinc 410431774 Nov 26 12:35 EVNT.47483658._000812.pool.root.1
[2025-11-27 08:00:52] drwxrwx--x. 2 boinc boinc        68 Nov 26 12:35 shared
[2025-11-27 08:00:52] -rw-r--r--. 2 boinc boinc    590102 Nov 26 12:35 input.tar.gz
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc      6393 Nov 26 12:35 init_data.xml
[2025-11-27 08:00:52] -rw-r--r--. 2 boinc boinc     15847 Nov 26 12:35 start_atlas.sh
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc         0 Nov 26 12:35 boinc_lockfile
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc      2786 Nov 26 12:35 pandaJob.out
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc    991830 Nov 26 12:40 agis_schedconf.cvmfs.json
[2025-11-27 08:00:52] drwx------. 5 boinc boinc      4096 Nov 26 12:40 pilot3
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc       533 Nov 27 07:49 boinc_task_state.xml
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc 915381752 Nov 27 07:59 HITS.47556137._007990.pool.root.1
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc      1033 Nov 27 08:00 memory_monitor_summary.json
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc   1516240 Nov 27 08:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc   2301213 Nov 27 08:00 log.47556137._007990.job.log.tgz.1
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc        95 Nov 27 08:00 pilot_heartbeat.json
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc      8625 Nov 27 08:00 heartbeat.json
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc        29 Nov 27 08:00 wrapper_checkpoint.txt
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc      8192 Nov 27 08:00 boinc_mmap_file
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc       820 Nov 27 08:00 pilotlog.txt
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc   9390319 Nov 27 08:00 log.47556137._007990.job.log.1
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc       353 Nov 27 08:00 output.list
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc       620 Nov 27 08:00 runtime_log
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc  11714560 Nov 27 08:00 result.tar.gz
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc      8833 Nov 27 08:00 runtime_log.err
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc       661 Nov 27 08:00 Px0NDmtoRh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwdIKDm5lUTyn.diag
[2025-11-27 08:00:52] -rw-r--r--. 1 boinc boinc     21432 Nov 27 08:00 stderr.txt
[2025-11-27 08:00:52] HITS file was successfully produced:
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc 915381752 Nov 27 07:59 shared/HITS.pool.root.1
[2025-11-27 08:00:52]  *** Contents of shared directory: ***
[2025-11-27 08:00:52] total 1306780
[2025-11-27 08:00:52] -rw-r--r--. 2 boinc boinc 410431774 Nov 26 12:35 ATLAS.root_0
[2025-11-27 08:00:52] -rw-r--r--. 2 boinc boinc    590102 Nov 26 12:35 input.tar.gz
[2025-11-27 08:00:52] -rw-r--r--. 2 boinc boinc     15847 Nov 26 12:35 start_atlas.sh
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc 915381752 Nov 27 07:59 HITS.pool.root.1
[2025-11-27 08:00:52] -rw-------. 1 boinc boinc  11714560 Nov 27 08:00 result.tar.gz
08:00:53 (20753): run_atlas exited; CPU time 309366.369247
08:00:53 (20753): called boinc_finish(0)

</stderr_txt>
]]>

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