Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:07:50 (308): wrapper (7.7.26015): starting
00:07:50 (308): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:07:50] Arguments: --nthreads 8
[2025-11-27 00:07:50] Threads: 8
[2025-11-27 00:07:50] Checking for CVMFS
[2025-11-27 00:07:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:07:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:07:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:07:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:07:53] 2.11.2.0 2281 172815 133212 153339 3 13 19459930 25165825 1288 130560 12 56349432 99.891 29543216 2078 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:07:53] CVMFS is ok
[2025-11-27 00:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:07:53] Checking for apptainer binary...
[2025-11-27 00:07:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:07:53] Running /usr/bin/apptainer --version
[2025-11-27 00:07:53] apptainer version 1.3.2-1.el7
[2025-11-27 00:07:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:08:24] cg-vwn445.simple-grid.lan
[2025-11-27 00:08:24] apptainer works
[2025-11-27 00:08:24] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:08:24] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:08:24] Starting ATLAS job with PandaID=6895343185
[2025-11-27 00:08:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:30:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:30:53] 2025-11-27 22:29:42,729 | INFO     | time since job start (83845s) is within the limit (172800.0s)
[2025-11-27 23:30:53] 2025-11-27 22:29:44,057 | INFO     | monitor loop #5642: job 0:6895343185 is in state 'finished'
[2025-11-27 23:30:53] 2025-11-27 22:29:44,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:30:53] 2025-11-27 22:29:44,737 | INFO     | time since job start (83847s) is within the limit (172800.0s)
[2025-11-27 23:30:53] 2025-11-27 22:29:46,562 | INFO     | monitor loop #5643: job 0:6895343185 is in state 'finished'
[2025-11-27 23:30:53] 2025-11-27 22:29:46,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:30:53] 2025-11-27 22:29:46,744 | INFO     | time since job start (83849s) is within the limit (172800.0s)
[2025-11-27 23:30:53] 2025-11-27 22:29:47,890 | INFO     | PID=4196 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:30:53] 2025-11-27 22:29:47,890 | INFO     | .. there are 9 such processes running
[2025-11-27 23:30:53] 2025-11-27 22:29:48,891 | INFO     | time since job start (83851s) is within the limit (172800.0s)
[2025-11-27 23:30:53] 2025-11-27 22:29:49,072 | INFO     | monitor loop #5644: job 0:6895343185 is in state 'finished'
[2025-11-27 23:30:53] 2025-11-27 22:29:49,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:30:53] 2025-11-27 22:29:50,898 | INFO     | time since job start (83853s) is within the limit (172800.0s)
[2025-11-27 23:30:53] 2025-11-27 22:29:51,583 | INFO     | monitor loop #5645: job 0:6895343185 is in state 'finished'
[2025-11-27 23:30:53] 2025-11-27 22:29:51,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,418 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:30:53] 2025-11-27 22:29:52,419 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 23:30:53] 2025-11-27 22:29:52,420 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6895343185/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,421 | INFO     | extracted standard info from prmon json
[2025-11-27 23:30:53] 2025-11-27 22:29:52,421 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:30:53] 2025-11-27 22:29:52,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:30:53] 2025-11-27 22:29:52,463 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:30:53] 2025-11-27 22:29:52,465 | INFO     | sum of square deviations: 790369585109.8104
[2025-11-27 23:30:53] 2025-11-27 22:29:52,533 | INFO     | sum of deviations: 3217202320239.7417
[2025-11-27 23:30:53] 2025-11-27 22:29:52,533 | INFO     | mean x: 1764240849.5519767
[2025-11-27 23:30:53] 2025-11-27 22:29:52,533 | INFO     | mean y: 2841504.630307467
[2025-11-27 23:30:53] 2025-11-27 22:29:52,533 | INFO     | intersect: -7178507400.454098
[2025-11-27 23:30:53] 2025-11-27 22:29:52,535 | INFO     | chi2: 23.209223507759212
[2025-11-27 23:30:53] 2025-11-27 22:29:52,537 | INFO     | sum of square deviations: 781722726371.7562
[2025-11-27 23:30:53] 2025-11-27 22:29:52,586 | INFO     | sum of deviations: 3667579171559.1626
[2025-11-27 23:30:53] 2025-11-27 22:29:52,586 | INFO     | mean x: 1764240697.0558412
[2025-11-27 23:30:53] 2025-11-27 22:29:52,586 | INFO     | mean y: 2849445.866274798
[2025-11-27 23:30:53] 2025-11-27 22:29:52,587 | INFO     | intersect: -8274372407.6812105
[2025-11-27 23:30:53] 2025-11-27 22:29:52,588 | INFO     | chi2: 20.037084957644055
[2025-11-27 23:30:53] 2025-11-27 22:29:52,588 | INFO     | current chi2=20.037084957644055 (change=13.667577241671447 %)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,588 | INFO     | right removable region: 1360
[2025-11-27 23:30:53] 2025-11-27 22:29:52,590 | INFO     | sum of square deviations: 781721849801.7565
[2025-11-27 23:30:53] 2025-11-27 22:29:52,666 | INFO     | sum of deviations: 2635701894279.9346
[2025-11-27 23:30:53] 2025-11-27 22:29:52,667 | INFO     | mean x: 1764241002.0558412
[2025-11-27 23:30:53] 2025-11-27 22:29:52,667 | INFO     | mean y: 2851759.0271858927
[2025-11-27 23:30:53] 2025-11-27 22:29:52,667 | INFO     | intersect: -5945572673.863039
[2025-11-27 23:30:53] 2025-11-27 22:29:52,669 | INFO     | chi2: 18.320391869959924
[2025-11-27 23:30:53] 2025-11-27 22:29:52,669 | INFO     | current chi2=18.320391869959924 (change=21.064175784100982 %)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,669 | INFO     | left removable region: 10
[2025-11-27 23:30:53] 2025-11-27 22:29:52,671 | INFO     | sum of square deviations: 762920384923.8922
[2025-11-27 23:30:53] 2025-11-27 22:29:52,744 | INFO     | sum of deviations: 2688653889795.315
[2025-11-27 23:30:53] 2025-11-27 22:29:52,745 | INFO     | mean x: 1764240971.5644445
[2025-11-27 23:30:53] 2025-11-27 22:29:52,745 | INFO     | mean y: 2870346.7607407407
[2025-11-27 23:30:53] 2025-11-27 22:29:52,746 | INFO     | intersect: -6214598008.349744
[2025-11-27 23:30:53] 2025-11-27 22:29:52,747 | INFO     | chi2: 10.962223159645891
[2025-11-27 23:30:53] 2025-11-27 22:29:52,748 | INFO     | current memory leak: 3.52 B/s (using 1350 data points, chi2=10.96)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,749 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,749 | INFO     | ..............................
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . Timing measurements:
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . get job = 0 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . initial setup = 9 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . payload setup = 135 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . stage-in = 0 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . payload execution = 83422 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . stage-out = 6 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | . log creation = 2 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,750 | INFO     | ..............................
[2025-11-27 23:30:53] 2025-11-27 22:29:52,862 | INFO     | 
[2025-11-27 23:30:53] 2025-11-27 22:29:52,862 | INFO     | job summary report
[2025-11-27 23:30:53] 2025-11-27 22:29:52,862 | INFO     | --------------------------------------------------
[2025-11-27 23:30:53] 2025-11-27 22:29:52,862 | INFO     | PanDA job id: 6895343185
[2025-11-27 23:30:53] 2025-11-27 22:29:52,862 | INFO     | task id: 47556149
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | errors: (none)
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | pilot state: finished 
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | transexitcode: 0
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | exeerrorcode: 0
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | exeerrordiag: 
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | exitcode: 0
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | exitmsg: OK
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | cpuconsumptiontime: 315073 s
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | nevents: 1000
[2025-11-27 23:30:53] 2025-11-27 22:29:52,863 | INFO     | neventsw: 0
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | pid: 10787
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | pgrp: 10787
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | corecount: 8
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | event service: False
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | sizes: {0: 2283433, 1: 2284119, 2: 2284290, 12: 2284318, 23: 2284346, 34: 2284374, 44: 2284530, 55: 2284558, 66: 2284586, 77: 2284614, 87: 2284670, 95: 2285240, 98
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | --------------------------------------------------
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | 
[2025-11-27 23:30:53] 2025-11-27 22:29:52,864 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-27 23:30:53] 2025-11-27 22:29:52,905 | INFO     | time since job start (83855s) is within the limit (172800.0s)
[2025-11-27 23:30:53] 2025-11-27 22:29:53,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:30:53] 2025-11-27 22:29:53,036 | INFO     | job 6895343185 has completed (purged errors)
[2025-11-27 23:30:53] 2025-11-27 22:29:53,037 | INFO     | overall cleanup function is called
[2025-11-27 23:30:53] 2025-11-27 22:29:54,052 | INFO     | --- collectZombieJob: --- 10, [10787]
[2025-11-27 23:30:53] 2025-11-27 22:29:54,052 | INFO     | zombie collector waiting for pid 10787
[2025-11-27 23:30:53] 2025-11-27 22:29:54,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:30:53] 2025-11-27 22:29:54,052 | INFO     | collected zombie processes
[2025-11-27 23:30:53] 2025-11-27 22:29:54,052 | INFO     | will attempt to kill all subprocesses of pid=10787
[2025-11-27 23:30:53] 2025-11-27 22:29:54,145 | INFO     | process IDs to be killed: [10787] (in reverse order)
[2025-11-27 23:30:53] 2025-11-27 22:29:54,750 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:30:53] 2025-11-27 22:29:54,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:30:53] 2025-11-27 22:29:54,753 | INFO     | did not find any defunct processes belonging to 10787
[2025-11-27 23:30:53] 2025-11-27 22:29:54,755 | INFO     | did not find any defunct processes belonging to 10787
[2025-11-27 23:30:53] 2025-11-27 22:29:54,828 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:30:53] 2025-11-27 22:29:54,828 | INFO     | ready for new job
[2025-11-27 23:30:53] 2025-11-27 22:29:54,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:30:53] 2025-11-27 22:29:54,833 | INFO     | ***************************************
[2025-11-27 23:30:53] 2025-11-27 22:29:54,834 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:30:53] 2025-11-27 22:29:54,834 | INFO     | ***************************************
[2025-11-27 23:30:53] 2025-11-27 22:29:54,834 | INFO     | 
[2025-11-27 23:30:53] 2025-11-27 22:29:54,835 | INFO     | pilot is running in a VM
[2025-11-27 23:30:53] 2025-11-27 22:29:54,835 | INFO     | architecture information:
[2025-11-27 23:30:53] 2025-11-27 22:29:54,849 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:30:53] 2025-11-27 22:29:55,052 | INFO     | cat /etc/os-release:
[2025-11-27 23:30:53] NAME="CentOS Linux"
[2025-11-27 23:30:53] VERSION="7 (Core)"
[2025-11-27 23:30:53] ID="centos"
[2025-11-27 23:30:53] ID_LIKE="rhel fedora"
[2025-11-27 23:30:53] VERSION_ID="7"
[2025-11-27 23:30:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:30:53] ANSI_COLOR="0;31"
[2025-11-27 23:30:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:30:53] HOME_URL="https://www.centos.org/"
[2025-11-27 23:30:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:30:53] 
[2025-11-27 23:30:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:30:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:30:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:30:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:30:53] 
[2025-11-27 23:30:53] 2025-11-27 22:29:55,053 | INFO     | ***************************************
[2025-11-27 23:30:53] 2025-11-27 22:29:55,556 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-27 23:30:53] 2025-11-27 22:29:55,829 | INFO     | sufficient remaining disk space (495246639104 B)
[2025-11-27 23:30:53] 2025-11-27 22:29:55,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:30:53] 2025-11-27 22:29:55,829 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:30:53] 2025-11-27 22:29:55,829 | INFO     | update_server=False
[2025-11-27 23:30:53] 2025-11-27 22:29:55,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:30:53] 2025-11-27 22:29:55,830 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:30:53] 2025-11-27 22:29:55,830 | INFO     | aborting loop
[2025-11-27 23:30:53] 2025-11-27 22:29:55,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:30:53] 2025-11-27 22:29:56,069 | INFO     | all data control threads have been joined
[2025-11-27 23:30:53] 2025-11-27 22:29:56,715 | INFO     | all job control threads have been joined
[2025-11-27 23:30:53] 2025-11-27 22:29:56,835 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:56,836 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,075 | INFO     | [data] control thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,206 | INFO     | all payload control threads have been joined
[2025-11-27 23:30:53] 2025-11-27 22:29:57,268 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,311 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,692 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,721 | INFO     | [job] control thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,750 | INFO     | [job] validate thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,766 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,838 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:57,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:30:53] 2025-11-27 22:29:58,157 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:58,212 | INFO     | [payload] control thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:58,227 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:58,882 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:29:59,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:30:53] 2025-11-27 22:30:03,131 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:30:53] 2025-11-27 22:30:26,049 | INFO     | PID=4196 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 23:30:53] 2025-11-27 22:30:26,049 | INFO     | .. there are 9 such processes running
[2025-11-27 23:30:53] 2025-11-27 22:30:26,049 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:30:53] 2025-11-27 22:30:26,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:30:53] 2025-11-27 22:30:26,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:30:53] 2025-11-27 22:30:42,901 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:30:53] 2025-11-27 22:30:43,579 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140478176261952)>', '<ExcThread(monitor, started 140477198214912)>']
[2025-11-27 23:30:53] 2025-11-27 22:30:44,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:30:53] 2025-11-27 22:30:44,157 | INFO     | [monitor] control thread has ended
[2025-11-27 23:30:53] 2025-11-27 22:30:48,605 | INFO     | all workflow threads have been joined
[2025-11-27 23:30:53] 2025-11-27 22:30:48,605 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:30:53] 2025-11-27 22:30:48,606 | INFO     | traces error code: 0
[2025-11-27 23:30:53] 2025-11-27 22:30:48,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:30:53] 2025-11-27 22:30:48,958 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:30:53] 2025-11-27 22:30:49,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:30:53] 2025-11-27 22:30:49,058 [wrapper] pilotpid: 4196
[2025-11-27 23:30:53] 2025-11-27 22:30:49,174 [wrapper] Pilot exit status: 0
[2025-11-27 23:30:53] 2025-11-27 22:30:49,618 [wrapper] pandaids: 6895343185
[2025-11-27 23:30:53] 2025-11-27 22:30:50,642 [wrapper] cleanup supervisor_pilot 14111 4197
[2025-11-27 23:30:53] 2025-11-27 22:30:50,735 [wrapper] Test setup, not cleaning
[2025-11-27 23:30:53] 2025-11-27 22:30:50,805 [wrapper] apfmon messages muted
[2025-11-27 23:30:53] 2025-11-27 22:30:50,905 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:30:53] 2025-11-27 22:30:50,994 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:30:53]  *** Error codes and diagnostics ***
[2025-11-27 23:30:53]     "exeErrorCode": 0,
[2025-11-27 23:30:53]     "exeErrorDiag": "",
[2025-11-27 23:30:53]     "pilotErrorCode": 0,
[2025-11-27 23:30:53]     "pilotErrorDiag": "",
[2025-11-27 23:30:53]  *** Listing of results directory ***
[2025-11-27 23:30:53] total 1329008
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc    576529 Nov 22 16:48 pilot3.tar.gz
[2025-11-27 23:30:53] -rwx------. 1 boinc boinc     36292 Nov 22 16:56 runpilot2-wrapper.sh
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc      5112 Nov 22 16:56 queuedata.json
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:30:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:07 run_atlas
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:07 job.xml
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc      6393 Nov 27 00:07 init_data.xml
[2025-11-27 23:30:53] -rw-r--r--. 2 boinc boinc 409659935 Nov 27 00:07 EVNT.47483658._001097.pool.root.1
[2025-11-27 23:30:53] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:07 start_atlas.sh
[2025-11-27 23:30:53] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:07 shared
[2025-11-27 23:30:53] -rw-r--r--. 2 boinc boinc    590102 Nov 27 00:07 input.tar.gz
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:07 boinc_lockfile
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc      2783 Nov 27 00:08 pandaJob.out
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc    991546 Nov 27 00:12 agis_schedconf.cvmfs.json
[2025-11-27 23:30:53] drwx------. 5 boinc boinc      4096 Nov 27 00:12 pilot3
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:09 boinc_task_state.xml
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc 920031421 Nov 27 23:26 HITS.47556149._000836.pool.root.1
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc      1028 Nov 27 23:28 memory_monitor_summary.json
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc   1516240 Nov 27 23:28 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc   2462871 Nov 27 23:28 log.47556149._000836.job.log.tgz.1
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc        95 Nov 27 23:29 pilot_heartbeat.json
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc      8623 Nov 27 23:29 heartbeat.json
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc      8192 Nov 27 23:30 boinc_mmap_file
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc        29 Nov 27 23:30 wrapper_checkpoint.txt
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc      4884 Nov 27 23:30 pilotlog.txt
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc  11191674 Nov 27 23:30 log.47556149._000836.job.log.1
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc       353 Nov 27 23:30 output.list
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc       620 Nov 27 23:30 runtime_log
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc  13670400 Nov 27 23:30 result.tar.gz
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc      8833 Nov 27 23:30 runtime_log.err
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc       662 Nov 27 23:30 mzLLDm294g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpAIKDmCTMnGo.diag
[2025-11-27 23:30:53] -rw-r--r--. 1 boinc boinc     21506 Nov 27 23:30 stderr.txt
[2025-11-27 23:30:53] HITS file was successfully produced:
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc 920031421 Nov 27 23:26 shared/HITS.pool.root.1
[2025-11-27 23:30:53]  *** Contents of shared directory: ***
[2025-11-27 23:30:53] total 1312480
[2025-11-27 23:30:53] -rw-r--r--. 2 boinc boinc 409659935 Nov 27 00:07 ATLAS.root_0
[2025-11-27 23:30:53] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:07 start_atlas.sh
[2025-11-27 23:30:53] -rw-r--r--. 2 boinc boinc    590102 Nov 27 00:07 input.tar.gz
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc 920031421 Nov 27 23:26 HITS.pool.root.1
[2025-11-27 23:30:53] -rw-------. 1 boinc boinc  13670400 Nov 27 23:30 result.tar.gz
23:30:54 (308): run_atlas exited; CPU time 315664.647993
23:30:54 (308): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN