Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:31:26 (3783942): wrapper (7.7.26015): starting
11:31:26 (3783942): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 11:31:26] Arguments: --nthreads 8
[2025-11-24 11:31:26] Threads: 8
[2025-11-24 11:31:26] Checking for CVMFS
[2025-11-24 11:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:31:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:31:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:31:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:31:28] 2.13.2.0 11666 31767 282904 153252 0 345 36504517 40960000 22968 16776704 0 52463750 99.792 24952119 35720 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 11:31:28] CVMFS is ok
[2025-11-24 11:31:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:31:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:31:28] Further information can be found at the LHC@home message board.
[2025-11-24 11:31:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:31:28] Checking for apptainer binary...
[2025-11-24 11:31:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:31:28] Running /usr/bin/apptainer --version
[2025-11-24 11:31:28] apptainer version 1.4.4-1.el9
[2025-11-24 11:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:31:28] c-211-33-2.aglt2.org
[2025-11-24 11:31:28] apptainer works
[2025-11-24 11:31:28] Set ATHENA_PROC_NUMBER=8
[2025-11-24 11:31:28] Set ATHENA_CORE_NUMBER=8
[2025-11-24 11:31:28] Starting ATLAS job with PandaID=6895355119
[2025-11-24 11:31:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:38:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:38:57] 2025-11-25 17:37:53,983 | INFO     | .. there are 17 such processes running
[2025-11-25 12:38:57] 2025-11-25 17:37:54,673 | INFO     | monitor loop #5254: job 0:6895355119 is in state 'finished'
[2025-11-25 12:38:57] 2025-11-25 17:37:54,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:57] 2025-11-25 17:37:54,984 | INFO     | time since job start (90349s) is within the limit (172800.0s)
[2025-11-25 12:38:57] 2025-11-25 17:37:56,992 | INFO     | time since job start (90351s) is within the limit (172800.0s)
[2025-11-25 12:38:57] 2025-11-25 17:37:57,178 | INFO     | monitor loop #5255: job 0:6895355119 is in state 'finished'
[2025-11-25 12:38:57] 2025-11-25 17:37:57,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:57] 2025-11-25 17:37:59,000 | INFO     | time since job start (90354s) is within the limit (172800.0s)
[2025-11-25 12:38:57] 2025-11-25 17:37:59,683 | INFO     | monitor loop #5256: job 0:6895355119 is in state 'finished'
[2025-11-25 12:38:57] 2025-11-25 17:37:59,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:57] 2025-11-25 17:38:01,007 | INFO     | time since job start (90356s) is within the limit (172800.0s)
[2025-11-25 12:38:57] 2025-11-25 17:38:02,188 | INFO     | monitor loop #5257: job 0:6895355119 is in state 'finished'
[2025-11-25 12:38:57] 2025-11-25 17:38:02,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:57] 2025-11-25 17:38:03,014 | INFO     | time since job start (90358s) is within the limit (172800.0s)
[2025-11-25 12:38:57] 2025-11-25 17:38:04,693 | INFO     | monitor loop #5258: job 0:6895355119 is in state 'finished'
[2025-11-25 12:38:57] 2025-11-25 17:38:04,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:57] 2025-11-25 17:38:04,872 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 12:38:57] 2025-11-25 17:38:04,951 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2616.483833333334
[2025-11-25 12:38:57] 2025-11-25 17:38:05,049 | INFO     | time since job start (90360s) is within the limit (172800.0s)
[2025-11-25 12:38:57] 2025-11-25 17:38:05,071 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895355119/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:38:57] 2025-11-25 17:38:05,071 | INFO     | extracted standard info from prmon json
[2025-11-25 12:38:57] 2025-11-25 17:38:05,072 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:38:57] 2025-11-25 17:38:05,072 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:38:57] 2025-11-25 17:38:05,190 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:38:57] 2025-11-25 17:38:05,192 | INFO     | sum of square deviations: 1003205977738.9447
[2025-11-25 12:38:57] 2025-11-25 17:38:05,368 | INFO     | sum of deviations: 2667253339643.027
[2025-11-25 12:38:57] 2025-11-25 17:38:05,368 | INFO     | mean x: 1764047100.5233266
[2025-11-25 12:38:57] 2025-11-25 17:38:05,369 | INFO     | mean y: 2905961.375929682
[2025-11-25 12:38:57] 2025-11-25 17:38:05,369 | INFO     | intersect: -4687218125.367523
[2025-11-25 12:38:57] 2025-11-25 17:38:05,371 | INFO     | chi2: 18.25626063296124
[2025-11-25 12:38:57] 2025-11-25 17:38:05,392 | INFO     | sum of square deviations: 993067590864.1655
[2025-11-25 12:38:57] 2025-11-25 17:38:05,554 | INFO     | sum of deviations: 3153271487045.125
[2025-11-25 12:38:57] 2025-11-25 17:38:05,554 | INFO     | mean x: 1764046948.035278
[2025-11-25 12:38:57] 2025-11-25 17:38:05,554 | INFO     | mean y: 2913270.247625509
[2025-11-25 12:38:57] 2025-11-25 17:38:05,554 | INFO     | intersect: -5598436521.2687025
[2025-11-25 12:38:57] 2025-11-25 17:38:05,564 | INFO     | chi2: 15.136833910970338
[2025-11-25 12:38:57] 2025-11-25 17:38:05,565 | INFO     | current chi2=15.136833910970338 (change=17.08688753248215 %)
[2025-11-25 12:38:57] 2025-11-25 17:38:05,565 | INFO     | right removable region: 1473
[2025-11-25 12:38:57] 2025-11-25 17:38:05,567 | INFO     | sum of square deviations: 993064412154.1653
[2025-11-25 12:38:57] 2025-11-25 17:38:05,756 | INFO     | sum of deviations: 2171116781051.5728
[2025-11-25 12:38:57] 2025-11-25 17:38:05,756 | INFO     | mean x: 1764047253.035278
[2025-11-25 12:38:57] 2025-11-25 17:38:05,756 | INFO     | mean y: 2913419.5468113977
[2025-11-25 12:38:57] 2025-11-25 17:38:05,756 | INFO     | intersect: -3853787663.24081
[2025-11-25 12:38:57] 2025-11-25 17:38:05,769 | INFO     | chi2: 15.431877308841464
[2025-11-25 12:38:57] 2025-11-25 17:38:05,769 | INFO     | current chi2=15.431877308841464 (change=15.470765787712404 %)
[2025-11-25 12:38:57] 2025-11-25 17:38:05,769 | INFO     | left removable region: 10
[2025-11-25 12:38:57] 2025-11-25 17:38:05,771 | INFO     | sum of square deviations: 970998589165.2095
[2025-11-25 12:38:57] 2025-11-25 17:38:05,931 | INFO     | sum of deviations: 2592276491257.0786
[2025-11-25 12:38:57] 2025-11-25 17:38:05,932 | INFO     | mean x: 1764047222.5557075
[2025-11-25 12:38:57] 2025-11-25 17:38:05,932 | INFO     | mean y: 2924552.1831852356
[2025-11-25 12:38:57] 2025-11-25 17:38:05,932 | INFO     | intersect: -4706555147.916001
[2025-11-25 12:38:57] 2025-11-25 17:38:05,934 | INFO     | chi2: 11.466362198909579
[2025-11-25 12:38:57] 2025-11-25 17:38:05,946 | INFO     | current memory leak: 2.67 B/s (using 1463 data points, chi2=11.47)
[2025-11-25 12:38:57] 2025-11-25 17:38:05,948 | INFO     | could have reported an average CPU frequency of 2609 MHz (53 samples)
[2025-11-25 12:38:57] 2025-11-25 17:38:05,948 | INFO     | ..............................
[2025-11-25 12:38:57] 2025-11-25 17:38:05,948 | INFO     | . Timing measurements:
[2025-11-25 12:38:57] 2025-11-25 17:38:05,948 | INFO     | . get job = 0 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,948 | INFO     | . initial setup = 4 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,948 | INFO     | . payload setup = 27 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,949 | INFO     | . stage-in = 0 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,949 | INFO     | . payload execution = 90239 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,949 | INFO     | . stage-out = 10 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,949 | INFO     | . log creation = 2 s
[2025-11-25 12:38:57] 2025-11-25 17:38:05,949 | INFO     | ..............................
[2025-11-25 12:38:57] 2025-11-25 17:38:06,621 | INFO     | 
[2025-11-25 12:38:57] 2025-11-25 17:38:06,621 | INFO     | job summary report
[2025-11-25 12:38:57] 2025-11-25 17:38:06,621 | INFO     | --------------------------------------------------
[2025-11-25 12:38:57] 2025-11-25 17:38:06,621 | INFO     | PanDA job id: 6895355119
[2025-11-25 12:38:57] 2025-11-25 17:38:06,621 | INFO     | task id: 47556137
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | errors: (none)
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | pilot state: finished 
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | transexitcode: 0
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | exeerrorcode: 0
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | exeerrordiag: 
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | exitcode: 0
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | exitmsg: OK
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | cpuconsumptiontime: 288826 s
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | nevents: 1000
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | neventsw: 0
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | pid: 3796470
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | pgrp: 3796470
[2025-11-25 12:38:57] 2025-11-25 17:38:06,622 | INFO     | corecount: 8
[2025-11-25 12:38:57] 2025-11-25 17:38:06,623 | INFO     | event service: False
[2025-11-25 12:38:57] 2025-11-25 17:38:06,623 | INFO     | sizes: {0: 2284303, 1: 2284303, 12: 2284331, 15: 2284621, 22: 2284649, 90272: 2350190, 90284: 2359245, 90318: 2359531}
[2025-11-25 12:38:57] 2025-11-25 17:38:06,623 | INFO     | --------------------------------------------------
[2025-11-25 12:38:57] 2025-11-25 17:38:06,623 | INFO     | 
[2025-11-25 12:38:57] 2025-11-25 17:38:06,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 12:38:57] 2025-11-25 17:38:06,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | job 6895355119 has completed (purged errors)
[2025-11-25 12:38:57] 2025-11-25 17:38:06,698 | INFO     | overall cleanup function is called
[2025-11-25 12:38:57] 2025-11-25 17:38:07,735 | INFO     | --- collectZombieJob: --- 10, [3796470]
[2025-11-25 12:38:57] 2025-11-25 17:38:07,735 | INFO     | zombie collector waiting for pid 3796470
[2025-11-25 12:38:57] 2025-11-25 17:38:07,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:38:57] 2025-11-25 17:38:07,735 | INFO     | collected zombie processes
[2025-11-25 12:38:57] 2025-11-25 17:38:07,735 | INFO     | will attempt to kill all subprocesses of pid=3796470
[2025-11-25 12:38:57] 2025-11-25 17:38:09,235 | INFO     | process IDs to be killed: [3796470] (in reverse order)
[2025-11-25 12:38:57] 2025-11-25 17:38:09,513 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:38:57] 2025-11-25 17:38:09,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:38:57] 2025-11-25 17:38:09,544 | INFO     | did not find any defunct processes belonging to 3796470
[2025-11-25 12:38:57] 2025-11-25 17:38:09,575 | INFO     | did not find any defunct processes belonging to 3796470
[2025-11-25 12:38:57] 2025-11-25 17:38:09,580 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:38:57] 2025-11-25 17:38:09,581 | INFO     | ready for new job
[2025-11-25 12:38:57] 2025-11-25 17:38:09,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:38:57] 2025-11-25 17:38:09,589 | INFO     | ***************************************
[2025-11-25 12:38:57] 2025-11-25 17:38:09,589 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:38:57] 2025-11-25 17:38:09,593 | INFO     | ***************************************
[2025-11-25 12:38:57] 2025-11-25 17:38:09,593 | INFO     | 
[2025-11-25 12:38:57] 2025-11-25 17:38:09,603 | INFO     | architecture information:
[2025-11-25 12:38:57] 2025-11-25 17:38:09,611 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:38:57] 2025-11-25 17:38:09,670 | INFO     | cat /etc/os-release:
[2025-11-25 12:38:57] NAME="CentOS Linux"
[2025-11-25 12:38:57] VERSION="7 (Core)"
[2025-11-25 12:38:57] ID="centos"
[2025-11-25 12:38:57] ID_LIKE="rhel fedora"
[2025-11-25 12:38:57] VERSION_ID="7"
[2025-11-25 12:38:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:38:57] ANSI_COLOR="0;31"
[2025-11-25 12:38:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:38:57] HOME_URL="https://www.centos.org/"
[2025-11-25 12:38:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:38:57] 
[2025-11-25 12:38:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:38:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:38:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:38:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:38:57] 
[2025-11-25 12:38:57] 2025-11-25 17:38:09,671 | INFO     | ***************************************
[2025-11-25 12:38:57] 2025-11-25 17:38:10,174 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 12:38:57] 2025-11-25 17:38:10,314 | INFO     | sufficient remaining disk space (123226554368 B)
[2025-11-25 12:38:57] 2025-11-25 17:38:10,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:38:57] 2025-11-25 17:38:10,315 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:38:57] 2025-11-25 17:38:10,315 | INFO     | update_server=False
[2025-11-25 12:38:57] 2025-11-25 17:38:10,315 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:38:57] 2025-11-25 17:38:10,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:38:57] 2025-11-25 17:38:10,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:38:57] 2025-11-25 17:38:10,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:38:57] 2025-11-25 17:38:10,766 | INFO     | aborting loop
[2025-11-25 12:38:57] 2025-11-25 17:38:11,257 | INFO     | all data control threads have been joined
[2025-11-25 12:38:57] 2025-11-25 17:38:11,321 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:11,325 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:11,352 | INFO     | all payload control threads have been joined
[2025-11-25 12:38:57] 2025-11-25 17:38:11,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:38:57] 2025-11-25 17:38:11,487 | INFO     | all job control threads have been joined
[2025-11-25 12:38:57] 2025-11-25 17:38:11,772 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,154 | INFO     | [job] validate thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,155 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,155 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,159 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,282 | INFO     | [data] control thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,292 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,325 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,358 | INFO     | [payload] control thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,374 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,481 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,499 | INFO     | [job] control thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:12,635 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:14,327 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:38:57] 2025-11-25 17:38:38,882 | INFO     | PID=3788970 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:38:57] 2025-11-25 17:38:38,882 | INFO     | .. there are 17 such processes running
[2025-11-25 12:38:57] 2025-11-25 17:38:38,883 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:38:57] 2025-11-25 17:38:38,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:38:57] 2025-11-25 17:38:38,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:38:57] 2025-11-25 17:38:48,847 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:38:57] 2025-11-25 17:38:50,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663447222080)>', '<ExcThread(monitor, started 139662874113792)>']
[2025-11-25 12:38:57] 2025-11-25 17:38:50,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:38:57] 2025-11-25 17:38:50,962 | INFO     | [monitor] control thread has ended
[2025-11-25 12:38:57] 2025-11-25 17:38:55,122 | INFO     | all workflow threads have been joined
[2025-11-25 12:38:57] 2025-11-25 17:38:55,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:38:57] 2025-11-25 17:38:55,123 | INFO     | traces error code: 0
[2025-11-25 12:38:57] 2025-11-25 17:38:55,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:38:57] 2025-11-25 17:38:55,889 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:38:57] 2025-11-25 17:38:55,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:38:57] 2025-11-25 17:38:55,928 [wrapper] pilotpid: 3788970
[2025-11-25 12:38:57] 2025-11-25 17:38:55,944 [wrapper] Pilot exit status: 0
[2025-11-25 12:38:57] 2025-11-25 17:38:56,026 [wrapper] pandaids: 6895355119
[2025-11-25 12:38:57] 2025-11-25 17:38:56,612 [wrapper] cleanup supervisor_pilot 2375014 3788971
[2025-11-25 12:38:57] 2025-11-25 17:38:56,654 [wrapper] Test setup, not cleaning
[2025-11-25 12:38:57] 2025-11-25 17:38:56,669 [wrapper] apfmon messages muted
[2025-11-25 12:38:57] 2025-11-25 17:38:56,681 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:38:57] 2025-11-25 17:38:56,723 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:38:57]  *** Error codes and diagnostics ***
[2025-11-25 12:38:57]     "exeErrorCode": 0,
[2025-11-25 12:38:57]     "exeErrorDiag": "",
[2025-11-25 12:38:57]     "pilotErrorCode": 0,
[2025-11-25 12:38:57]     "pilotErrorDiag": "",
[2025-11-25 12:38:57]  *** Listing of results directory ***
[2025-11-25 12:38:57] total 1321028
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 00:47 pilot3.tar.gz
[2025-11-25 12:38:57] -rwx------. 1 boincer umatlas     36292 Nov 23 00:55 runpilot2-wrapper.sh
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:55 queuedata.json
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas       100 Nov 24 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:38:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 11:31 run_atlas
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas       105 Nov 24 11:31 job.xml
[2025-11-25 12:38:57] -rw-r--r--. 2 boincer umatlas 409605471 Nov 24 11:31 EVNT.47483658._000644.pool.root.1
[2025-11-25 12:38:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:31 start_atlas.sh
[2025-11-25 12:38:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 11:31 shared
[2025-11-25 12:38:57] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 11:31 input.tar.gz
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas         0 Nov 24 11:31 boinc_lockfile
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas      2782 Nov 24 11:31 pandaJob.out
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas        57 Nov 24 11:31 setup.sh.local
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas    991965 Nov 24 11:32 agis_schedconf.cvmfs.json
[2025-11-25 12:38:57] drwx------. 5 boincer umatlas      4096 Nov 24 11:32 pilot3
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:57 boinc_task_state.xml
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas      6881 Nov 25 12:28 init_data.xml
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas 912010136 Nov 25 12:35 HITS.47556137._006391.pool.root.1
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas      1060 Nov 25 12:37 memory_monitor_summary.json
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas   2465046 Nov 25 12:37 log.47556137._006391.job.log.tgz.1
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas        95 Nov 25 12:37 pilot_heartbeat.json
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas      8623 Nov 25 12:38 heartbeat.json
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:38 boinc_mmap_file
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:38 wrapper_checkpoint.txt
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas      4825 Nov 25 12:38 pilotlog.txt
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas  11132247 Nov 25 12:38 log.47556137._006391.job.log.1
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas       353 Nov 25 12:38 output.list
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:38 runtime_log
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas  13619200 Nov 25 12:38 result.tar.gz
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas      9353 Nov 25 12:38 runtime_log.err
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas       662 Nov 25 12:38 895KDmmFIh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpgKKDmO96Fhm.diag
[2025-11-25 12:38:57] -rw-r--r--. 1 boincer umatlas     21752 Nov 25 12:38 stderr.txt
[2025-11-25 12:38:57] HITS file was successfully produced:
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas 912010136 Nov 25 12:35 shared/HITS.pool.root.1
[2025-11-25 12:38:57]  *** Contents of shared directory: ***
[2025-11-25 12:38:57] total 1304548
[2025-11-25 12:38:57] -rw-r--r--. 2 boincer umatlas 409605471 Nov 24 11:31 ATLAS.root_0
[2025-11-25 12:38:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:31 start_atlas.sh
[2025-11-25 12:38:57] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 11:31 input.tar.gz
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas 912010136 Nov 25 12:35 HITS.pool.root.1
[2025-11-25 12:38:57] -rw-------. 1 boincer umatlas  13619200 Nov 25 12:38 result.tar.gz
12:38:58 (3783942): run_atlas exited; CPU time 290762.081797
12:38:58 (3783942): called boinc_finish(0)

</stderr_txt>
]]>

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