Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:44:01 (1324659): wrapper (7.7.26015): starting
23:44:01 (1324659): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 23:44:01] Arguments: --nthreads 3
[2025-11-26 23:44:01] Threads: 3
[2025-11-26 23:44:01] Checking for CVMFS
[2025-11-26 23:44:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:44:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:44:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:44:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:44:02] 2.9.2.0 3943730 11785 91168 153337 3 81 30267746 36864000 0 130560 0 4366931 99.939 583000 3276 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 23:44:02] CVMFS is ok
[2025-11-26 23:44:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:44:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:44:02] Further information can be found at the LHC@home message board.
[2025-11-26 23:44:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:44:02] Checking for apptainer binary...
[2025-11-26 23:44:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:44:02] Running /usr/bin/apptainer --version
[2025-11-26 23:44:02] apptainer version 1.4.1-1.1
[2025-11-26 23:44:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:44:02] thA331a
[2025-11-26 23:44:02] apptainer works
[2025-11-26 23:44:02] Set ATHENA_PROC_NUMBER=3
[2025-11-26 23:44:02] Set ATHENA_CORE_NUMBER=3
[2025-11-26 23:44:02] Starting ATLAS job with PandaID=6895354840
[2025-11-26 23:44:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:53:47]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | job 6895354840 has completed (purged errors)
[2025-11-27 07:53:47] 2025-11-27 06:52:42,013 | INFO     | overall cleanup function is called
[2025-11-27 07:53:47] 2025-11-27 06:52:42,150 | INFO     | PID=1328392 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:53:47] 2025-11-27 06:52:43,021 | INFO     | --- collectZombieJob: --- 10, [1334836]
[2025-11-27 07:53:47] 2025-11-27 06:52:43,022 | INFO     | zombie collector waiting for pid 1334836
[2025-11-27 07:53:47] 2025-11-27 06:52:43,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:53:47] 2025-11-27 06:52:43,022 | INFO     | collected zombie processes
[2025-11-27 07:53:47] 2025-11-27 06:52:43,022 | INFO     | will attempt to kill all subprocesses of pid=1334836
[2025-11-27 07:53:47] 2025-11-27 06:52:43,063 | INFO     | process IDs to be killed: [1334836] (in reverse order)
[2025-11-27 07:53:47] 2025-11-27 06:52:43,088 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:53:47] 2025-11-27 06:52:43,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:53:47] 2025-11-27 06:52:43,089 | INFO     | did not find any defunct processes belonging to 1334836
[2025-11-27 07:53:47] 2025-11-27 06:52:43,090 | INFO     | did not find any defunct processes belonging to 1334836
[2025-11-27 07:53:47] 2025-11-27 06:52:43,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:53:47] 2025-11-27 06:52:43,091 | INFO     | ready for new job
[2025-11-27 07:53:47] 2025-11-27 06:52:43,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:53:47] 2025-11-27 06:52:43,092 | INFO     | ***************************************
[2025-11-27 07:53:47] 2025-11-27 06:52:43,092 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:53:47] 2025-11-27 06:52:43,092 | INFO     | ***************************************
[2025-11-27 07:53:47] 2025-11-27 06:52:43,092 | INFO     | 
[2025-11-27 07:53:47] 2025-11-27 06:52:43,092 | INFO     | architecture information:
[2025-11-27 07:53:47] 2025-11-27 06:52:43,092 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:53:47] 2025-11-27 06:52:43,101 | INFO     | cat /etc/os-release:
[2025-11-27 07:53:47] NAME="CentOS Linux"
[2025-11-27 07:53:47] VERSION="7 (Core)"
[2025-11-27 07:53:47] ID="centos"
[2025-11-27 07:53:47] ID_LIKE="rhel fedora"
[2025-11-27 07:53:47] VERSION_ID="7"
[2025-11-27 07:53:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:53:47] ANSI_COLOR="0;31"
[2025-11-27 07:53:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:53:47] HOME_URL="https://www.centos.org/"
[2025-11-27 07:53:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:53:47] 
[2025-11-27 07:53:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:53:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:53:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:53:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:53:47] 
[2025-11-27 07:53:47] 2025-11-27 06:52:43,101 | INFO     | ***************************************
[2025-11-27 07:53:47] 2025-11-27 06:52:43,604 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 07:53:47] 2025-11-27 06:52:43,616 | INFO     | sufficient remaining disk space (326900908032 B)
[2025-11-27 07:53:47] 2025-11-27 06:52:43,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:53:47] 2025-11-27 06:52:43,616 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:53:47] 2025-11-27 06:52:43,616 | INFO     | update_server=False
[2025-11-27 07:53:47] 2025-11-27 06:52:43,616 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:53:47] 2025-11-27 06:52:43,616 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:53:47] 2025-11-27 06:52:43,806 | INFO     | all payload control threads have been joined
[2025-11-27 07:53:47] 2025-11-27 06:52:44,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:53:47] 2025-11-27 06:52:44,050 | INFO     | aborting loop
[2025-11-27 07:53:47] 2025-11-27 06:52:44,207 | INFO     | all data control threads have been joined
[2025-11-27 07:53:47] 2025-11-27 06:52:44,622 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:44,622 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:44,809 | INFO     | [payload] control thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:44,893 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:44,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,039 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,056 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:53:47] 2025-11-27 06:52:45,213 | INFO     | [data] control thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,223 | INFO     | all job control threads have been joined
[2025-11-27 07:53:47] 2025-11-27 06:52:45,426 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,477 | INFO     | [job] validate thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,509 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,633 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:53:47] 2025-11-27 06:52:45,705 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:45,947 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:46,228 | INFO     | [job] control thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:47,117 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:52:49,640 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:53:47] 2025-11-27 06:53:14,258 | INFO     | PID=1328392 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:53:47] 2025-11-27 06:53:14,258 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:53:47] 2025-11-27 06:53:14,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:53:47] 2025-11-27 06:53:14,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:53:47] 2025-11-27 06:53:41,153 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:53:47] 2025-11-27 06:53:42,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583460951872)>', '<ExcThread(monitor, started 140583112787712)>']
[2025-11-27 07:53:47] 2025-11-27 06:53:43,401 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:53:47] 2025-11-27 06:53:43,402 | INFO     | [monitor] control thread has ended
[2025-11-27 07:53:47] 2025-11-27 06:53:47,466 | INFO     | all workflow threads have been joined
[2025-11-27 07:53:47] 2025-11-27 06:53:47,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:53:47] 2025-11-27 06:53:47,467 | INFO     | traces error code: 0
[2025-11-27 07:53:47] 2025-11-27 06:53:47,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:53:47] 2025-11-27 06:53:47,518 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:53:47] 2025-11-27 06:53:47,520 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:53:47] 2025-11-27 06:53:47,522 [wrapper] pilotpid: 1328392
[2025-11-27 07:53:47] 2025-11-27 06:53:47,525 [wrapper] Pilot exit status: 0
[2025-11-27 07:53:47] 2025-11-27 06:53:47,532 [wrapper] pandaids: 6895354840
[2025-11-27 07:53:47] 2025-11-27 06:53:47,548 [wrapper] cleanup supervisor_pilot 1385233 1328393
[2025-11-27 07:53:47] 2025-11-27 06:53:47,550 [wrapper] Test setup, not cleaning
[2025-11-27 07:53:47] 2025-11-27 06:53:47,552 [wrapper] apfmon messages muted
[2025-11-27 07:53:47] 2025-11-27 06:53:47,555 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:53:47] 2025-11-27 06:53:47,557 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:53:47]  *** Error codes and diagnostics ***
[2025-11-27 07:53:47]     "exeErrorCode": 0,
[2025-11-27 07:53:47]     "exeErrorDiag": "",
[2025-11-27 07:53:47]     "pilotErrorCode": 0,
[2025-11-27 07:53:47]     "pilotErrorDiag": "",
[2025-11-27 07:53:47]  *** Listing of results directory ***
[2025-11-27 07:53:47] total 1329520
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:42 queuedata.json
[2025-11-27 07:53:47] -rwx------ 1 boinc boinc     36292 Nov 23 06:42 runpilot2-wrapper.sh
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc       100 Nov 26 23:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:53:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 23:44 run_atlas
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc       105 Nov 26 23:44 job.xml
[2025-11-27 07:53:47] -rw-r--r-- 2 boinc boinc 411810598 Nov 26 23:44 EVNT.47483658._000638.pool.root.1
[2025-11-27 07:53:47] -rw-r--r-- 2 boinc boinc    590101 Nov 26 23:44 input.tar.gz
[2025-11-27 07:53:47] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:44 start_atlas.sh
[2025-11-27 07:53:47] drwxrwx--x 2 boinc boinc      4096 Nov 26 23:44 shared
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:44 boinc_setup_complete
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc      6442 Nov 26 23:44 init_data.xml
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:44 boinc_lockfile
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc      2785 Nov 26 23:44 pandaJob.out
[2025-11-27 07:53:47] -rw------- 1 boinc boinc    991546 Nov 26 23:44 agis_schedconf.cvmfs.json
[2025-11-27 07:53:47] drwx------ 5 boinc boinc      4096 Nov 26 23:44 pilot3
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc       531 Nov 27 07:48 boinc_task_state.xml
[2025-11-27 07:53:47] -rw------- 1 boinc boinc 935107780 Nov 27 07:52 HITS.47556137._006335.pool.root.1
[2025-11-27 07:53:47] -rw------- 1 boinc boinc        95 Nov 27 07:52 pilot_heartbeat.json
[2025-11-27 07:53:47] -rw------- 1 boinc boinc      1023 Nov 27 07:52 memory_monitor_summary.json
[2025-11-27 07:53:47] -rw------- 1 boinc boinc   1516240 Nov 27 07:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:53:47] -rw------- 1 boinc boinc   1173629 Nov 27 07:52 log.47556137._006335.job.log.tgz.1
[2025-11-27 07:53:47] -rw------- 1 boinc boinc      8567 Nov 27 07:52 heartbeat.json
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc        28 Nov 27 07:53 wrapper_checkpoint.txt
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc      8192 Nov 27 07:53 boinc_mmap_file
[2025-11-27 07:53:47] -rw------- 1 boinc boinc      4752 Nov 27 07:53 pilotlog.txt
[2025-11-27 07:53:47] -rw------- 1 boinc boinc   4128699 Nov 27 07:53 log.47556137._006335.job.log.1
[2025-11-27 07:53:47] -rw------- 1 boinc boinc       353 Nov 27 07:53 output.list
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc       620 Nov 27 07:53 runtime_log
[2025-11-27 07:53:47] -rw------- 1 boinc boinc   5324800 Nov 27 07:53 result.tar.gz
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc      8903 Nov 27 07:53 runtime_log.err
[2025-11-27 07:53:47] -rw------- 1 boinc boinc       666 Nov 27 07:53 cZXKDmj2Hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQgKKDmi2OnDn.diag
[2025-11-27 07:53:47] -rw-r--r-- 1 boinc boinc     11764 Nov 27 07:53 stderr.txt
[2025-11-27 07:53:47] HITS file was successfully produced:
[2025-11-27 07:53:47] -rw------- 1 boinc boinc 935107780 Nov 27 07:52 shared/HITS.pool.root.1
[2025-11-27 07:53:47]  *** Contents of shared directory: ***
[2025-11-27 07:53:47] total 1321156
[2025-11-27 07:53:47] -rw-r--r-- 2 boinc boinc 411810598 Nov 26 23:44 ATLAS.root_0
[2025-11-27 07:53:47] -rw-r--r-- 2 boinc boinc    590101 Nov 26 23:44 input.tar.gz
[2025-11-27 07:53:47] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:44 start_atlas.sh
[2025-11-27 07:53:47] -rw------- 1 boinc boinc 935107780 Nov 27 07:52 HITS.pool.root.1
[2025-11-27 07:53:47] -rw------- 1 boinc boinc   5324800 Nov 27 07:53 result.tar.gz
07:53:49 (1324659): run_atlas exited; CPU time 86497.144320
07:53:49 (1324659): called boinc_finish(0)

</stderr_txt>
]]>

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