Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:28:41 (2520888): wrapper (7.7.26015): starting
13:28:41 (2520888): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 13:28:41] Arguments: --nthreads 8
[2025-11-24 13:28:41] Threads: 8
[2025-11-24 13:28:41] Checking for CVMFS
[2025-11-24 13:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:28:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:28:42] 2.13.2.0 6307 30375 296380 153255 2 482 26050078 40960000 12815 16776704 0 44432947 99.747 26417221 39587 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 13:28:42] CVMFS is ok
[2025-11-24 13:28:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:28:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:28:42] Further information can be found at the LHC@home message board.
[2025-11-24 13:28:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:28:42] Checking for apptainer binary...
[2025-11-24 13:28:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:28:42] Running /usr/bin/apptainer --version
[2025-11-24 13:28:42] apptainer version 1.4.4-1.el9
[2025-11-24 13:28:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:28:42] c-206-39.aglt2.org
[2025-11-24 13:28:42] apptainer works
[2025-11-24 13:28:42] Set ATHENA_PROC_NUMBER=8
[2025-11-24 13:28:42] Set ATHENA_CORE_NUMBER=8
[2025-11-24 13:28:42] Starting ATLAS job with PandaID=6894052233
[2025-11-24 13:28:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:46:50]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:46:50] 2025-11-25 02:58:28,112 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 23:46:50] 2025-11-25 02:58:28,112 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 23:46:50] 2025-11-25 02:58:28,118 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:46:50] 2025-11-25 02:58:28,119 | INFO     | sum of square deviations: 38992092542.14781
[2025-11-24 23:46:50] 2025-11-25 02:58:28,120 | INFO     | monitor loop #1989: job 0:6894052233 is in state 'finished'
[2025-11-24 23:46:50] 2025-11-25 02:58:28,124 | INFO     | sum of deviations: 15744222135.105785
[2025-11-24 23:46:50] 2025-11-25 02:58:28,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,125 | INFO     | mean x: 1764024243.2135727
[2025-11-24 23:46:50] 2025-11-25 02:58:28,128 | INFO     | mean y: 2599876.896207585
[2025-11-24 23:46:50] 2025-11-25 02:58:28,129 | INFO     | intersect: -709677606.2074609
[2025-11-24 23:46:50] 2025-11-25 02:58:28,129 | INFO     | chi2: 2.011478477027115
[2025-11-24 23:46:50] 2025-11-25 02:58:28,130 | INFO     | sum of square deviations: 37836270946.91731
[2025-11-24 23:46:50] 2025-11-25 02:58:28,134 | INFO     | sum of deviations: 47591829526.4113
[2025-11-24 23:46:50] 2025-11-25 02:58:28,134 | INFO     | mean x: 1764024090.715726
[2025-11-24 23:46:50] 2025-11-25 02:58:28,135 | INFO     | mean y: 2604044.0241935486
[2025-11-24 23:46:50] 2025-11-25 02:58:28,135 | INFO     | intersect: -2216249233.657643
[2025-11-24 23:46:50] 2025-11-25 02:58:28,135 | INFO     | chi2: 1.3287747210845708
[2025-11-24 23:46:50] 2025-11-25 02:58:28,135 | INFO     | current chi2=1.3287747210845708 (change=33.940395770555455 %)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,136 | INFO     | sum of square deviations: 36703519551.68242
[2025-11-24 23:46:50] 2025-11-25 02:58:28,140 | INFO     | sum of deviations: 46385542257.53357
[2025-11-24 23:46:50] 2025-11-25 02:58:28,141 | INFO     | mean x: 1764023938.2179227
[2025-11-24 23:46:50] 2025-11-25 02:58:28,141 | INFO     | mean y: 2603881.6211812627
[2025-11-24 23:46:50] 2025-11-25 02:58:28,141 | INFO     | intersect: -2226751992.937108
[2025-11-24 23:46:50] 2025-11-25 02:58:28,141 | INFO     | chi2: 1.3288279345861995
[2025-11-24 23:46:50] 2025-11-25 02:58:28,141 | INFO     | current chi2=1.3288279345861995 (change=-0.004004704543539599 %)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,141 | INFO     | right removable region: 490
[2025-11-24 23:46:50] 2025-11-25 02:58:28,142 | INFO     | sum of square deviations: 37836205676.91729
[2025-11-24 23:46:50] 2025-11-25 02:58:28,147 | INFO     | sum of deviations: -45945412651.42944
[2025-11-24 23:46:50] 2025-11-25 02:58:28,147 | INFO     | mean x: 1764024395.715726
[2025-11-24 23:46:50] 2025-11-25 02:58:28,147 | INFO     | mean y: 2607970.4012096776
[2025-11-24 23:46:50] 2025-11-25 02:58:28,147 | INFO     | intersect: 2144705132.056954
[2025-11-24 23:46:50] 2025-11-25 02:58:28,148 | INFO     | chi2: 0.87435938032225
[2025-11-24 23:46:50] 2025-11-25 02:58:28,148 | INFO     | current chi2=0.87435938032225 (change=56.53150703285087 %)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,149 | INFO     | sum of square deviations: 36703389011.6824
[2025-11-24 23:46:50] 2025-11-25 02:58:28,153 | INFO     | sum of deviations: -45137088349.26481
[2025-11-24 23:46:50] 2025-11-25 02:58:28,154 | INFO     | mean x: 1764024548.2179227
[2025-11-24 23:46:50] 2025-11-25 02:58:28,154 | INFO     | mean y: 2607854.348268839
[2025-11-24 23:46:50] 2025-11-25 02:58:28,154 | INFO     | intersect: 2171969704.226517
[2025-11-24 23:46:50] 2025-11-25 02:58:28,154 | INFO     | chi2: 0.8609633688608651
[2025-11-24 23:46:50] 2025-11-25 02:58:28,154 | INFO     | current chi2=0.8609633688608651 (change=1.5320944411264554 %)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,154 | INFO     | left removable region: 20
[2025-11-24 23:46:50] 2025-11-25 02:58:28,155 | INFO     | sum of square deviations: 32192439772.042614
[2025-11-24 23:46:50] 2025-11-25 02:58:28,159 | INFO     | sum of deviations: 12279000324.191494
[2025-11-24 23:46:50] 2025-11-25 02:58:28,160 | INFO     | mean x: 1764024517.7234042
[2025-11-24 23:46:50] 2025-11-25 02:58:28,160 | INFO     | mean y: 2608271.455319149
[2025-11-24 23:46:50] 2025-11-25 02:58:28,160 | INFO     | intersect: -670234724.5520339
[2025-11-24 23:46:50] 2025-11-25 02:58:28,160 | INFO     | chi2: 0.12492415593099508
[2025-11-24 23:46:50] 2025-11-25 02:58:28,160 | INFO     | current memory leak: 0.38 B/s (using 470 data points, chi2=0.12)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | could have reported an average CPU frequency of 3233 MHz (20 samples)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | ..............................
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . Timing measurements:
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . get job = 0 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . initial setup = 2 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . payload setup = 9 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . stage-in = 0 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . payload execution = 30511 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . stage-out = 2 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,161 | INFO     | . log creation = 0 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,162 | INFO     | ..............................
[2025-11-24 23:46:50] 2025-11-25 02:58:28,248 | INFO     | 
[2025-11-24 23:46:50] 2025-11-25 02:58:28,248 | INFO     | job summary report
[2025-11-24 23:46:50] 2025-11-25 02:58:28,248 | INFO     | --------------------------------------------------
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | PanDA job id: 6894052233
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | task id: 47523650
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | errors: (none)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | pilot state: finished 
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | transexitcode: 0
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | exeerrorcode: 0
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | exeerrordiag: 
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | exitcode: 0
[2025-11-24 23:46:50] 2025-11-25 02:58:28,249 | INFO     | exitmsg: OK
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | cpuconsumptiontime: 90826 s
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | nevents: 400
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | neventsw: 0
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | pid: 2532137
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | pgrp: 2532137
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | corecount: 8
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | event service: False
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | sizes: {0: 2283956, 1: 2283956, 11: 2283984, 13: 2284274, 22: 2284330, 30524: 2322864, 30525: 2322991, 30528: 2332101, 30533: 2332239}
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | --------------------------------------------------
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | 
[2025-11-24 23:46:50] 2025-11-25 02:58:28,250 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 23:46:50] 2025-11-25 02:58:28,273 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,273 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,273 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | job 6894052233 has completed (purged errors)
[2025-11-24 23:46:50] 2025-11-25 02:58:28,276 | INFO     | overall cleanup function is called
[2025-11-24 23:46:50] 2025-11-25 02:58:28,352 | INFO     | PID=2524569 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 23:46:50] 2025-11-25 02:58:28,352 | INFO     | .. there are 12 such processes running
[2025-11-24 23:46:50] 2025-11-25 02:58:29,286 | INFO     | --- collectZombieJob: --- 10, [2532137]
[2025-11-24 23:46:50] 2025-11-25 02:58:29,286 | INFO     | zombie collector waiting for pid 2532137
[2025-11-24 23:46:50] 2025-11-25 02:58:29,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:46:50] 2025-11-25 02:58:29,286 | INFO     | collected zombie processes
[2025-11-24 23:46:50] 2025-11-25 02:58:29,286 | INFO     | will attempt to kill all subprocesses of pid=2532137
[2025-11-24 23:46:50] 2025-11-25 02:58:29,538 | INFO     | process IDs to be killed: [2532137] (in reverse order)
[2025-11-24 23:46:50] 2025-11-25 02:58:29,638 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:46:50] 2025-11-25 02:58:29,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:46:50] 2025-11-25 02:58:29,653 | INFO     | did not find any defunct processes belonging to 2532137
[2025-11-24 23:46:50] 2025-11-25 02:58:29,665 | INFO     | did not find any defunct processes belonging to 2532137
[2025-11-24 23:46:50] 2025-11-25 02:58:29,667 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:46:50] 2025-11-25 02:58:29,667 | INFO     | ready for new job
[2025-11-24 23:46:50] 2025-11-25 02:58:29,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:46:50] 2025-11-25 02:58:29,672 | INFO     | ***************************************
[2025-11-24 23:46:50] 2025-11-25 02:58:29,672 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:46:50] 2025-11-25 02:58:29,672 | INFO     | ***************************************
[2025-11-24 23:46:50] 2025-11-25 02:58:29,672 | INFO     | 
[2025-11-24 23:46:50] 2025-11-25 02:58:29,676 | INFO     | architecture information:
[2025-11-24 23:46:50] 2025-11-25 02:58:29,676 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:46:50] 2025-11-25 02:58:29,695 | INFO     | cat /etc/os-release:
[2025-11-24 23:46:50] NAME="CentOS Linux"
[2025-11-24 23:46:50] VERSION="7 (Core)"
[2025-11-24 23:46:50] ID="centos"
[2025-11-24 23:46:50] ID_LIKE="rhel fedora"
[2025-11-24 23:46:50] VERSION_ID="7"
[2025-11-24 23:46:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:46:50] ANSI_COLOR="0;31"
[2025-11-24 23:46:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:46:50] HOME_URL="https://www.centos.org/"
[2025-11-24 23:46:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:46:50] 
[2025-11-24 23:46:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:46:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:46:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:46:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:46:50] 
[2025-11-24 23:46:50] 2025-11-25 02:58:29,695 | INFO     | ***************************************
[2025-11-24 23:46:50] 2025-11-25 02:58:30,199 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 23:46:50] 2025-11-25 02:58:30,218 | INFO     | sufficient remaining disk space (81982914560 B)
[2025-11-24 23:46:50] 2025-11-25 02:58:30,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:46:50] 2025-11-25 02:58:30,218 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:46:50] 2025-11-25 02:58:30,218 | INFO     | update_server=False
[2025-11-24 23:46:50] 2025-11-25 02:58:30,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:46:50] 2025-11-25 02:58:30,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:46:50] 2025-11-25 02:58:30,633 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 23:46:50] 2025-11-25 02:58:30,633 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 23:46:50] 2025-11-25 02:58:30,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:46:50] 2025-11-25 02:58:30,633 | INFO     | will abort loop
[2025-11-24 23:46:50] 2025-11-25 02:58:30,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:46:50] 2025-11-25 02:58:30,922 | INFO     | all job control threads have been joined
[2025-11-24 23:46:50] 2025-11-25 02:58:31,022 | INFO     | all payload control threads have been joined
[2025-11-24 23:46:50] 2025-11-25 02:58:31,224 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:31,225 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:31,229 | INFO     | all data control threads have been joined
[2025-11-24 23:46:50] 2025-11-25 02:58:31,638 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:31,928 | INFO     | [job] control thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,027 | INFO     | [payload] control thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,061 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,062 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,236 | INFO     | [data] control thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,241 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,563 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,572 | INFO     | [job] validate thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,610 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,759 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:32,772 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:33,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:46:50] 2025-11-25 02:58:37,343 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:40,422 | INFO     | job.realtimelogging is not enabled
[2025-11-24 23:46:50] 2025-11-25 02:58:41,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:46:50] 2025-11-25 02:58:57,028 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:46:50] 2025-11-25 02:58:57,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140276333119296)>', '<ExcThread(monitor, started 140275712259840)>']
[2025-11-24 23:46:50] 2025-11-25 02:59:00,707 | INFO     | PID=2524569 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 23:46:50] 2025-11-25 02:59:00,707 | INFO     | .. there are 12 such processes running
[2025-11-24 23:46:50] 2025-11-25 02:59:00,708 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:46:50] 2025-11-25 02:59:00,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:46:50] 2025-11-25 02:59:00,708 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:46:50] 2025-11-25 02:59:00,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:46:50] 2025-11-25 02:59:00,708 | INFO     | [monitor] control thread has ended
[2025-11-24 23:46:50] 2025-11-25 02:59:02,892 | INFO     | all workflow threads have been joined
[2025-11-24 23:46:50] 2025-11-25 02:59:02,892 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:46:50] 2025-11-25 02:59:02,892 | INFO     | traces error code: 0
[2025-11-24 23:46:50] 2025-11-25 02:59:02,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:46:50] 2025-11-25 02:59:03,078 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:46:50] 2025-11-25 02:59:03,081 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:46:50] 2025-11-25 02:59:03,086 [wrapper] pilotpid: 2524569
[2025-11-24 23:46:50] 2025-11-25 02:59:03,090 [wrapper] Pilot exit status: 0
[2025-11-24 23:46:50] 2025-11-25 02:59:03,119 [wrapper] pandaids: 6894052233
[2025-11-24 23:46:50] 2025-11-25 02:59:03,187 [wrapper] cleanup supervisor_pilot 3301416 2524570
[2025-11-24 23:46:50] 2025-11-25 02:59:03,197 [wrapper] Test setup, not cleaning
[2025-11-24 23:46:50] 2025-11-25 02:59:03,201 [wrapper] apfmon messages muted
[2025-11-24 23:46:50] 2025-11-25 02:59:03,204 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:46:50] 2025-11-25 02:59:03,207 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:46:50]  *** Error codes and diagnostics ***
[2025-11-24 23:46:50]     "exeErrorCode": 0,
[2025-11-24 23:46:50]     "exeErrorDiag": "",
[2025-11-24 23:46:50]     "pilotErrorCode": 0,
[2025-11-24 23:46:50]     "pilotErrorDiag": "",
[2025-11-24 23:46:50]  *** Listing of results directory ***
[2025-11-24 23:46:50] total 630268
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 00:21 pilot3.tar.gz
[2025-11-24 23:46:50] -rwx------. 1 boincer umatlas     36292 Nov 23 00:27 runpilot2-wrapper.sh
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:27 queuedata.json
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas       100 Nov 24 13:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:46:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 13:28 run_atlas
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas       105 Nov 24 13:28 job.xml
[2025-11-24 23:46:50] -rw-r--r--. 2 boincer umatlas 297970808 Nov 24 13:28 EVNT.47523648._000004.pool.root.1
[2025-11-24 23:46:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 13:28 start_atlas.sh
[2025-11-24 23:46:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 13:28 shared
[2025-11-24 23:46:50] -rw-r--r--. 2 boincer umatlas    589947 Nov 24 13:28 input.tar.gz
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas         0 Nov 24 13:28 boinc_lockfile
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas      2624 Nov 24 13:28 pandaJob.out
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas        57 Nov 24 13:28 setup.sh.local
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas    991801 Nov 24 13:29 agis_schedconf.cvmfs.json
[2025-11-24 23:46:50] drwx------. 5 boincer umatlas      4096 Nov 24 13:29 pilot3
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas       530 Nov 24 21:57 boinc_task_state.xml
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas 334144835 Nov 24 21:57 HITS.47523650._000081.pool.root.1
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas      1037 Nov 24 21:58 memory_monitor_summary.json
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas   1516227 Nov 24 21:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas    668043 Nov 24 21:58 log.47523650._000081.job.log.tgz.1
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas      7768 Nov 24 21:58 heartbeat.json
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas        95 Nov 24 21:59 pilot_heartbeat.json
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas      5082 Nov 24 21:59 pilotlog.txt
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas   4010857 Nov 24 21:59 log.47523650._000081.job.log.1
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas       357 Nov 24 21:59 output.list
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas       620 Nov 24 21:59 runtime_log
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas   4700160 Nov 24 21:59 result.tar.gz
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas      9343 Nov 24 21:59 runtime_log.err
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas       658 Nov 24 21:59 ivxLDmfoHh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoRIKDmpiUMem.diag
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas      6900 Nov 24 23:45 init_data.xml
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 23:46 boinc_mmap_file
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas        27 Nov 24 23:46 wrapper_checkpoint.txt
[2025-11-24 23:46:50] -rw-r--r--. 1 boincer umatlas     21374 Nov 24 23:46 stderr.txt
[2025-11-24 23:46:50] HITS file was successfully produced:
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas 334144835 Nov 24 21:57 shared/HITS.pool.root.1
[2025-11-24 23:46:50]  *** Contents of shared directory: ***
[2025-11-24 23:46:50] total 622496
[2025-11-24 23:46:50] -rw-r--r--. 2 boincer umatlas 297970808 Nov 24 13:28 ATLAS.root_0
[2025-11-24 23:46:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 13:28 start_atlas.sh
[2025-11-24 23:46:50] -rw-r--r--. 2 boincer umatlas    589947 Nov 24 13:28 input.tar.gz
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas 334144835 Nov 24 21:57 HITS.pool.root.1
[2025-11-24 23:46:50] -rw-------. 1 boincer umatlas   4700160 Nov 24 21:59 result.tar.gz
23:47:12 (2520888): run_atlas exited; CPU time 91266.281386
23:47:12 (2520888): called boinc_finish(0)

</stderr_txt>
]]>

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