Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:44:52 (12771): wrapper (7.7.26015): starting
22:44:52 (12771): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 22:44:52] Arguments: --nthreads 8
[2025-11-26 22:44:52] Threads: 8
[2025-11-26 22:44:52] Checking for CVMFS
[2025-11-26 22:44:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:44:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:44:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:44:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:44:55] 2.11.2.0 3881 223142 141340 153335 3 85 23969766 25165824 1288 130560 12 117389574 99.921 40532640 2636 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 22:44:55] CVMFS is ok
[2025-11-26 22:44:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:44:55] Checking for apptainer binary...
[2025-11-26 22:44:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:44:55] Running /usr/bin/apptainer --version
[2025-11-26 22:44:55] apptainer version 1.3.2-1.el7
[2025-11-26 22:44:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:45:09] cg-vwn428.simple-grid.lan
[2025-11-26 22:45:09] apptainer works
[2025-11-26 22:45:09] Set ATHENA_PROC_NUMBER=8
[2025-11-26 22:45:09] Set ATHENA_CORE_NUMBER=8
[2025-11-26 22:45:09] Starting ATLAS job with PandaID=6895364453
[2025-11-26 22:45:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:09:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:09:37] 2025-11-27 21:08:33,054 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:09:37] 2025-11-27 21:08:34,942 | INFO     | time since job start (83974s) is within the limit (172800.0s)
[2025-11-27 22:09:37] 2025-11-27 21:08:35,565 | INFO     | monitor loop #5655: job 0:6895364453 is in state 'finished'
[2025-11-27 22:09:37] 2025-11-27 21:08:35,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:09:37] 2025-11-27 21:08:36,955 | INFO     | time since job start (83976s) is within the limit (172800.0s)
[2025-11-27 22:09:37] 2025-11-27 21:08:38,074 | INFO     | monitor loop #5656: job 0:6895364453 is in state 'finished'
[2025-11-27 22:09:37] 2025-11-27 21:08:38,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:09:37] 2025-11-27 21:08:38,962 | INFO     | time since job start (83978s) is within the limit (172800.0s)
[2025-11-27 22:09:37] 2025-11-27 21:08:40,586 | INFO     | monitor loop #5657: job 0:6895364453 is in state 'finished'
[2025-11-27 22:09:37] 2025-11-27 21:08:40,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:09:37] 2025-11-27 21:08:40,969 | INFO     | time since job start (83980s) is within the limit (172800.0s)
[2025-11-27 22:09:37] 2025-11-27 21:08:42,166 | INFO     | PID=16577 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 22:09:37] 2025-11-27 21:08:42,166 | INFO     | .. there are 9 such processes running
[2025-11-27 22:09:37] 2025-11-27 21:08:43,091 | INFO     | monitor loop #5658: job 0:6895364453 is in state 'finished'
[2025-11-27 22:09:37] 2025-11-27 21:08:43,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:09:37] 2025-11-27 21:08:43,167 | INFO     | time since job start (83983s) is within the limit (172800.0s)
[2025-11-27 22:09:37] 2025-11-27 21:08:43,808 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:09:37] 2025-11-27 21:08:43,809 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 22:09:37] 2025-11-27 21:08:43,811 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895364453/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:09:37] 2025-11-27 21:08:43,811 | INFO     | extracted standard info from prmon json
[2025-11-27 22:09:37] 2025-11-27 21:08:43,811 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:09:37] 2025-11-27 21:08:43,812 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:09:37] 2025-11-27 21:08:43,835 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:09:37] 2025-11-27 21:08:43,837 | INFO     | sum of square deviations: 792107387492.7506
[2025-11-27 22:09:37] 2025-11-27 21:08:43,901 | INFO     | sum of deviations: 3377327557281.6167
[2025-11-27 22:09:37] 2025-11-27 21:08:43,902 | INFO     | mean x: 1764235906.0907097
[2025-11-27 22:09:37] 2025-11-27 21:08:43,902 | INFO     | mean y: 2848471.914411119
[2025-11-27 22:09:37] 2025-11-27 21:08:43,902 | INFO     | intersect: -7519367123.177975
[2025-11-27 22:09:37] 2025-11-27 21:08:43,904 | INFO     | chi2: 18.71159188082885
[2025-11-27 22:09:37] 2025-11-27 21:08:43,905 | INFO     | sum of square deviations: 783447856614.2822
[2025-11-27 22:09:37] 2025-11-27 21:08:43,975 | INFO     | sum of deviations: 3836108891437.4814
[2025-11-27 22:09:37] 2025-11-27 21:08:43,976 | INFO     | mean x: 1764235753.5947137
[2025-11-27 22:09:37] 2025-11-27 21:08:43,976 | INFO     | mean y: 2856550.3450807636
[2025-11-27 22:09:37] 2025-11-27 21:08:43,976 | INFO     | intersect: -8635625773.423151
[2025-11-27 22:09:37] 2025-11-27 21:08:43,978 | INFO     | chi2: 15.46561582507831
[2025-11-27 22:09:37] 2025-11-27 21:08:43,978 | INFO     | current chi2=15.46561582507831 (change=17.347407299302187 %)
[2025-11-27 22:09:37] 2025-11-27 21:08:43,978 | INFO     | right removable region: 1361
[2025-11-27 22:09:37] 2025-11-27 21:08:43,980 | INFO     | sum of square deviations: 783446947104.2812
[2025-11-27 22:09:37] 2025-11-27 21:08:44,051 | INFO     | sum of deviations: 2815974635103.5605
[2025-11-27 22:09:37] 2025-11-27 21:08:44,052 | INFO     | mean x: 1764236058.5947137
[2025-11-27 22:09:37] 2025-11-27 21:08:44,052 | INFO     | mean y: 2858355.9375917767
[2025-11-27 22:09:37] 2025-11-27 21:08:44,052 | INFO     | intersect: -6338405733.099082
[2025-11-27 22:09:37] 2025-11-27 21:08:44,053 | INFO     | chi2: 14.223222959881419
[2025-11-27 22:09:37] 2025-11-27 21:08:44,054 | INFO     | current chi2=14.223222959881419 (change=23.987103553418315 %)
[2025-11-27 22:09:37] 2025-11-27 21:08:44,054 | INFO     | left removable region: 10
[2025-11-27 22:09:37] 2025-11-27 21:08:44,056 | INFO     | sum of square deviations: 764617734301.4929
[2025-11-27 22:09:37] 2025-11-27 21:08:44,117 | INFO     | sum of deviations: 2886858190742.6416
[2025-11-27 22:09:37] 2025-11-27 21:08:44,118 | INFO     | mean x: 1764236028.103627
[2025-11-27 22:09:37] 2025-11-27 21:08:44,118 | INFO     | mean y: 2876893.359733531
[2025-11-27 22:09:37] 2025-11-27 21:08:44,118 | INFO     | intersect: -6658097603.637722
[2025-11-27 22:09:37] 2025-11-27 21:08:44,119 | INFO     | chi2: 6.990287351337725
[2025-11-27 22:09:37] 2025-11-27 21:08:44,120 | INFO     | current memory leak: 3.78 B/s (using 1351 data points, chi2=6.99)
[2025-11-27 22:09:37] 2025-11-27 21:08:44,121 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 22:09:37] 2025-11-27 21:08:44,121 | INFO     | ..............................
[2025-11-27 22:09:37] 2025-11-27 21:08:44,121 | INFO     | . Timing measurements:
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . get job = 0 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . initial setup = 4 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . payload setup = 156 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . stage-in = 0 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . payload execution = 83535 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . stage-out = 4 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | . log creation = 2 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,122 | INFO     | ..............................
[2025-11-27 22:09:37] 2025-11-27 21:08:44,243 | INFO     | 
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | job summary report
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | --------------------------------------------------
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | PanDA job id: 6895364453
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | task id: 47556137
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | errors: (none)
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | pilot state: finished 
[2025-11-27 22:09:37] 2025-11-27 21:08:44,244 | INFO     | transexitcode: 0
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | exeerrorcode: 0
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | exeerrordiag: 
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | exitcode: 0
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | exitmsg: OK
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | cpuconsumptiontime: 316059 s
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | nevents: 1000
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | neventsw: 0
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | pid: 23139
[2025-11-27 22:09:37] 2025-11-27 21:08:44,245 | INFO     | pgrp: 23139
[2025-11-27 22:09:37] 2025-11-27 21:08:44,246 | INFO     | corecount: 8
[2025-11-27 22:09:37] 2025-11-27 21:08:44,246 | INFO     | event service: False
[2025-11-27 22:09:37] 2025-11-27 21:08:44,246 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 33: 2284348, 44: 2284404, 55: 2284560, 66: 2284588, 76: 2284616, 87: 2284672, 91: 2284962, 98: 2285270, 8
[2025-11-27 22:09:37] 2025-11-27 21:08:44,246 | INFO     | --------------------------------------------------
[2025-11-27 22:09:37] 2025-11-27 21:08:44,246 | INFO     | 
[2025-11-27 22:09:37] 2025-11-27 21:08:44,246 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 22:09:37] 2025-11-27 21:08:44,658 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,658 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | job 6895364453 has completed (purged errors)
[2025-11-27 22:09:37] 2025-11-27 21:08:44,660 | INFO     | overall cleanup function is called
[2025-11-27 22:09:37] 2025-11-27 21:08:45,688 | INFO     | --- collectZombieJob: --- 10, [23139]
[2025-11-27 22:09:37] 2025-11-27 21:08:45,688 | INFO     | zombie collector waiting for pid 23139
[2025-11-27 22:09:37] 2025-11-27 21:08:45,688 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:09:37] 2025-11-27 21:08:45,688 | INFO     | collected zombie processes
[2025-11-27 22:09:37] 2025-11-27 21:08:45,688 | INFO     | will attempt to kill all subprocesses of pid=23139
[2025-11-27 22:09:37] 2025-11-27 21:08:45,802 | INFO     | process IDs to be killed: [23139] (in reverse order)
[2025-11-27 22:09:37] 2025-11-27 21:08:46,565 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:09:37] 2025-11-27 21:08:46,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:09:37] 2025-11-27 21:08:46,571 | INFO     | did not find any defunct processes belonging to 23139
[2025-11-27 22:09:37] 2025-11-27 21:08:46,574 | INFO     | did not find any defunct processes belonging to 23139
[2025-11-27 22:09:37] 2025-11-27 21:08:46,603 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:09:37] 2025-11-27 21:08:46,603 | INFO     | ready for new job
[2025-11-27 22:09:37] 2025-11-27 21:08:46,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:09:37] 2025-11-27 21:08:46,609 | INFO     | ***************************************
[2025-11-27 22:09:37] 2025-11-27 21:08:46,609 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:09:37] 2025-11-27 21:08:46,609 | INFO     | ***************************************
[2025-11-27 22:09:37] 2025-11-27 21:08:46,609 | INFO     | 
[2025-11-27 22:09:37] 2025-11-27 21:08:46,610 | INFO     | pilot is running in a VM
[2025-11-27 22:09:37] 2025-11-27 21:08:46,610 | INFO     | architecture information:
[2025-11-27 22:09:37] 2025-11-27 21:08:46,615 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:09:37] 2025-11-27 21:08:46,707 | INFO     | cat /etc/os-release:
[2025-11-27 22:09:37] NAME="CentOS Linux"
[2025-11-27 22:09:37] VERSION="7 (Core)"
[2025-11-27 22:09:37] ID="centos"
[2025-11-27 22:09:37] ID_LIKE="rhel fedora"
[2025-11-27 22:09:37] VERSION_ID="7"
[2025-11-27 22:09:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:09:37] ANSI_COLOR="0;31"
[2025-11-27 22:09:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:09:37] HOME_URL="https://www.centos.org/"
[2025-11-27 22:09:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:09:37] 
[2025-11-27 22:09:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:09:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:09:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:09:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:09:37] 
[2025-11-27 22:09:37] 2025-11-27 21:08:46,708 | INFO     | ***************************************
[2025-11-27 22:09:37] 2025-11-27 21:08:47,211 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 22:09:37] 2025-11-27 21:08:47,392 | INFO     | sufficient remaining disk space (495321088000 B)
[2025-11-27 22:09:37] 2025-11-27 21:08:47,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:09:37] 2025-11-27 21:08:47,393 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:09:37] 2025-11-27 21:08:47,393 | INFO     | update_server=False
[2025-11-27 22:09:37] 2025-11-27 21:08:47,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:09:37] 2025-11-27 21:08:47,394 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:09:37] 2025-11-27 21:08:47,394 | INFO     | aborting loop
[2025-11-27 22:09:37] 2025-11-27 21:08:47,551 | INFO     | all job control threads have been joined
[2025-11-27 22:09:37] 2025-11-27 21:08:47,692 | INFO     | all data control threads have been joined
[2025-11-27 22:09:37] 2025-11-27 21:08:47,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:09:37] 2025-11-27 21:08:47,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:09:37] 2025-11-27 21:08:48,399 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,400 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,557 | INFO     | [job] control thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,582 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,584 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,698 | INFO     | [data] control thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,734 | INFO     | all payload control threads have been joined
[2025-11-27 22:09:37] 2025-11-27 21:08:48,768 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:48,891 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:49,078 | INFO     | [job] validate thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:49,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:09:37] 2025-11-27 21:08:49,441 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:49,740 | INFO     | [payload] control thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:49,783 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:49,792 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:49,828 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:50,264 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:08:51,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:09:37] 2025-11-27 21:09:16,340 | INFO     | PID=16577 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 22:09:37] 2025-11-27 21:09:16,340 | INFO     | .. there are 9 such processes running
[2025-11-27 22:09:37] 2025-11-27 21:09:16,341 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:09:37] 2025-11-27 21:09:16,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:09:37] 2025-11-27 21:09:16,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:09:37] 2025-11-27 21:09:26,651 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:09:37] 2025-11-27 21:09:27,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673500268352)>', '<ExcThread(monitor, started 140672912840448)>']
[2025-11-27 22:09:37] 2025-11-27 21:09:27,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:09:37] 2025-11-27 21:09:27,406 | INFO     | [monitor] control thread has ended
[2025-11-27 22:09:37] 2025-11-27 21:09:32,340 | INFO     | all workflow threads have been joined
[2025-11-27 22:09:37] 2025-11-27 21:09:32,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:09:37] 2025-11-27 21:09:32,340 | INFO     | traces error code: 0
[2025-11-27 22:09:37] 2025-11-27 21:09:32,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:09:37] 2025-11-27 21:09:32,604 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:09:37] 2025-11-27 21:09:32,700 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:09:37] 2025-11-27 21:09:32,758 [wrapper] pilotpid: 16577
[2025-11-27 22:09:37] 2025-11-27 21:09:32,815 [wrapper] Pilot exit status: 0
[2025-11-27 22:09:37] 2025-11-27 21:09:33,113 [wrapper] pandaids: 6895364453
[2025-11-27 22:09:37] 2025-11-27 21:09:34,039 [wrapper] cleanup supervisor_pilot 23743 16578
[2025-11-27 22:09:37] 2025-11-27 21:09:34,150 [wrapper] Test setup, not cleaning
[2025-11-27 22:09:37] 2025-11-27 21:09:34,237 [wrapper] apfmon messages muted
[2025-11-27 22:09:37] 2025-11-27 21:09:34,326 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:09:37] 2025-11-27 21:09:34,358 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:09:37]  *** Error codes and diagnostics ***
[2025-11-27 22:09:37]     "exeErrorCode": 0,
[2025-11-27 22:09:37]     "exeErrorDiag": "",
[2025-11-27 22:09:37]     "pilotErrorCode": 0,
[2025-11-27 22:09:37]     "pilotErrorDiag": "",
[2025-11-27 22:09:37]  *** Listing of results directory ***
[2025-11-27 22:09:37] total 1327548
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc    576529 Nov 23 16:18 pilot3.tar.gz
[2025-11-27 22:09:37] -rwx------. 1 boinc boinc     36292 Nov 23 16:57 runpilot2-wrapper.sh
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc      5112 Nov 23 16:57 queuedata.json
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc       100 Nov 26 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:09:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 22:44 run_atlas
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc       105 Nov 26 22:44 job.xml
[2025-11-27 22:09:37] -rw-r--r--. 2 boinc boinc 409845487 Nov 26 22:44 EVNT.47483658._000806.pool.root.1
[2025-11-27 22:09:37] -rw-r--r--. 2 boinc boinc     15847 Nov 26 22:44 start_atlas.sh
[2025-11-27 22:09:37] drwxrwx--x. 2 boinc boinc        68 Nov 26 22:44 shared
[2025-11-27 22:09:37] -rw-r--r--. 2 boinc boinc    590099 Nov 26 22:44 input.tar.gz
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc      6392 Nov 26 22:44 init_data.xml
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc         0 Nov 26 22:44 boinc_lockfile
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc      2785 Nov 26 22:45 pandaJob.out
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc    991538 Nov 26 22:48 agis_schedconf.cvmfs.json
[2025-11-27 22:09:37] drwx------. 5 boinc boinc      4096 Nov 26 22:49 pilot3
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc       533 Nov 27 21:46 boinc_task_state.xml
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc 918328929 Nov 27 22:05 HITS.47556137._007926.pool.root.1
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc      1029 Nov 27 22:07 memory_monitor_summary.json
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc   1516240 Nov 27 22:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc   2457949 Nov 27 22:07 log.47556137._007926.job.log.tgz.1
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc      8625 Nov 27 22:08 heartbeat.json
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc        95 Nov 27 22:09 pilot_heartbeat.json
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc        29 Nov 27 22:09 wrapper_checkpoint.txt
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc      8192 Nov 27 22:09 boinc_mmap_file
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc      4884 Nov 27 22:09 pilotlog.txt
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc  11207616 Nov 27 22:09 log.47556137._007926.job.log.1
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc       353 Nov 27 22:09 output.list
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc       620 Nov 27 22:09 runtime_log
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc  13680640 Nov 27 22:09 result.tar.gz
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc       662 Nov 27 22:09 s6SMDmhdRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp1KKDmS2rutn.diag
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc      8817 Nov 27 22:09 runtime_log.err
[2025-11-27 22:09:37] -rw-r--r--. 1 boinc boinc     21521 Nov 27 22:09 stderr.txt
[2025-11-27 22:09:37] HITS file was successfully produced:
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc 918328929 Nov 27 22:05 shared/HITS.pool.root.1
[2025-11-27 22:09:37]  *** Contents of shared directory: ***
[2025-11-27 22:09:37] total 1311004
[2025-11-27 22:09:37] -rw-r--r--. 2 boinc boinc 409845487 Nov 26 22:44 ATLAS.root_0
[2025-11-27 22:09:37] -rw-r--r--. 2 boinc boinc     15847 Nov 26 22:44 start_atlas.sh
[2025-11-27 22:09:37] -rw-r--r--. 2 boinc boinc    590099 Nov 26 22:44 input.tar.gz
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc 918328929 Nov 27 22:05 HITS.pool.root.1
[2025-11-27 22:09:37] -rw-------. 1 boinc boinc  13680640 Nov 27 22:09 result.tar.gz
22:09:38 (12771): run_atlas exited; CPU time 316610.132253
22:09:38 (12771): called boinc_finish(0)

</stderr_txt>
]]>

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