Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
12:58:51 (4114339): wrapper (7.7.26015): starting
12:58:51 (4114339): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 12:58:51] Arguments: --nthreads 12
[2025-11-26 12:58:51] Threads: 12
[2025-11-26 12:58:51] Checking for CVMFS
[2025-11-26 12:58:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:58:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:58:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:58:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:58:52] 2.11.0.0 7129 7549 131884 153322 0 90 5362322 6144001 12740 130560 0 36125086 99.998 398087 223 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 12:58:52] CVMFS is ok
[2025-11-26 12:58:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:58:52] Checking for apptainer binary...
[2025-11-26 12:58:52] apptainer is not installed, using version from CVMFS
[2025-11-26 12:58:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:58:52] radiat0r
[2025-11-26 12:58:52] apptainer works
[2025-11-26 12:58:52] Set ATHENA_PROC_NUMBER=12
[2025-11-26 12:58:52] Set ATHENA_CORE_NUMBER=12
[2025-11-26 12:58:52] Starting ATLAS job with PandaID=6893852407
[2025-11-26 12:58:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/35 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:28:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:28:31] 2025-11-26 16:27:38,311 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 16:28:31] 2025-11-26 16:27:38,338 | INFO     | time since job start (12513s) is within the limit (172800.0s)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,365 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2801.8145429687493
[2025-11-26 16:28:31] 2025-11-26 16:27:38,432 | INFO     | using path: /var/lib/boinc/slots/35/PanDA_Pilot-6893852407/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,433 | INFO     | extracted standard info from prmon json
[2025-11-26 16:28:31] 2025-11-26 16:27:38,433 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:28:31] 2025-11-26 16:27:38,433 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:28:31] 2025-11-26 16:27:38,436 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:28:31] 2025-11-26 16:27:38,436 | INFO     | sum of square deviations: 2671283950.4097424
[2025-11-26 16:28:31] 2025-11-26 16:27:38,437 | INFO     | sum of deviations: 67167737350.70244
[2025-11-26 16:28:31] 2025-11-26 16:27:38,437 | INFO     | mean x: 1764168196.9463415
[2025-11-26 16:28:31] 2025-11-26 16:27:38,437 | INFO     | mean y: 3372582.3365853657
[2025-11-26 16:28:31] 2025-11-26 16:27:38,437 | INFO     | intersect: -44355515613.27379
[2025-11-26 16:28:31] 2025-11-26 16:27:38,437 | INFO     | chi2: 5.497334367683213
[2025-11-26 16:28:31] 2025-11-26 16:27:38,437 | INFO     | sum of square deviations: 2480604655.8200054
[2025-11-26 16:28:31] 2025-11-26 16:27:38,438 | INFO     | sum of deviations: 143505807710.34
[2025-11-26 16:28:31] 2025-11-26 16:27:38,438 | INFO     | mean x: 1764168044.47
[2025-11-26 16:28:31] 2025-11-26 16:27:38,438 | INFO     | mean y: 3433437.89
[2025-11-26 16:28:31] 2025-11-26 16:27:38,438 | INFO     | intersect: -102055699428.95102
[2025-11-26 16:28:31] 2025-11-26 16:27:38,438 | INFO     | chi2: 2.410568598896377
[2025-11-26 16:28:31] 2025-11-26 16:27:38,438 | INFO     | current chi2=2.410568598896377 (change=56.15022777098635 %)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,439 | INFO     | sum of square deviations: 2299203828.9538527
[2025-11-26 16:28:31] 2025-11-26 16:27:38,439 | INFO     | sum of deviations: 152669689544.3538
[2025-11-26 16:28:31] 2025-11-26 16:27:38,439 | INFO     | mean x: 1764167891.9846153
[2025-11-26 16:28:31] 2025-11-26 16:27:38,439 | INFO     | mean y: 3440934.7846153844
[2025-11-26 16:28:31] 2025-11-26 16:27:38,439 | INFO     | intersect: -117139267763.6246
[2025-11-26 16:28:31] 2025-11-26 16:27:38,439 | INFO     | chi2: 2.148002273219235
[2025-11-26 16:28:31] 2025-11-26 16:27:38,440 | INFO     | current chi2=2.148002273219235 (change=10.89229843105696 %)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,440 | INFO     | right removable region: 194
[2025-11-26 16:28:31] 2025-11-26 16:27:38,440 | INFO     | sum of square deviations: 2480510961.6800036
[2025-11-26 16:28:31] 2025-11-26 16:27:38,440 | INFO     | sum of deviations: 7296450799.58004
[2025-11-26 16:28:31] 2025-11-26 16:27:38,440 | INFO     | mean x: 1764168349.46
[2025-11-26 16:28:31] 2025-11-26 16:27:38,441 | INFO     | mean y: 3420085.135
[2025-11-26 16:28:31] 2025-11-26 16:27:38,441 | INFO     | intersect: -5185900890.609908
[2025-11-26 16:28:31] 2025-11-26 16:27:38,441 | INFO     | chi2: 3.46760305105129
[2025-11-26 16:28:31] 2025-11-26 16:27:38,441 | INFO     | current chi2=3.46760305105129 (change=36.922100437695036 %)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,441 | INFO     | sum of square deviations: 2299077441.671782
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | sum of deviations: -3101091697.3384686
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | mean x: 1764168501.9589744
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | mean y: 3428801.707692308
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | intersect: 2383012975.3286004
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | chi2: 3.444642680417945
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | current chi2=3.444642680417945 (change=0.6621395325622339 %)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | left removable region: 20
[2025-11-26 16:28:31] 2025-11-26 16:27:38,442 | INFO     | sum of square deviations: 1633472487.5
[2025-11-26 16:28:31] 2025-11-26 16:27:38,443 | INFO     | sum of deviations: 63543030647.000046
[2025-11-26 16:28:31] 2025-11-26 16:27:38,443 | INFO     | mean x: 1764168471.5
[2025-11-26 16:28:31] 2025-11-26 16:27:38,443 | INFO     | mean y: 3520352.4022988505
[2025-11-26 16:28:31] 2025-11-26 16:27:38,443 | INFO     | intersect: -68623660153.44367
[2025-11-26 16:28:31] 2025-11-26 16:27:38,443 | INFO     | chi2: 0.015317803934952951
[2025-11-26 16:28:31] 2025-11-26 16:27:38,443 | INFO     | current memory leak: 38.90 B/s (using 174 data points, chi2=0.02)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,444 | INFO     | monitor loop #883: job 0:6893852407 is in state 'finished'
[2025-11-26 16:28:31] 2025-11-26 16:27:38,444 | INFO     | could have reported an average CPU frequency of 2807 MHz (10 samples)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,444 | INFO     | ..............................
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . Timing measurements:
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . get job = 0 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . initial setup = 3 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . payload setup = 6 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . stage-in = 0 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . payload execution = 12469 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . stage-out = 4 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | . log creation = 0 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,445 | INFO     | ..............................
[2025-11-26 16:28:31] 2025-11-26 16:27:38,508 | INFO     | 
[2025-11-26 16:28:31] 2025-11-26 16:27:38,508 | INFO     | job summary report
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | --------------------------------------------------
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | PanDA job id: 6893852407
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | task id: 47523449
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | errors: (none)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | pilot state: finished 
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | transexitcode: 0
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | exeerrorcode: 0
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | exeerrordiag: 
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | exitcode: 0
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | exitmsg: OK
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | cpuconsumptiontime: 144029 s
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | nevents: 1000
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | neventsw: 0
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | pid: 4127234
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | pgrp: 4127234
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | corecount: 12
[2025-11-26 16:28:31] 2025-11-26 16:27:38,509 | INFO     | event service: False
[2025-11-26 16:28:31] 2025-11-26 16:27:38,510 | INFO     | sizes: {0: 2284316, 6: 2284578, 11: 2284606, 12480: 2315402, 12481: 2315401, 12485: 2324453, 12487: 2324637, 12497: 2324883}
[2025-11-26 16:28:31] 2025-11-26 16:27:38,510 | INFO     | --------------------------------------------------
[2025-11-26 16:28:31] 2025-11-26 16:27:38,510 | INFO     | 
[2025-11-26 16:28:31] 2025-11-26 16:27:38,510 | INFO     | executing command: ls -lF /var/lib/boinc/slots/35
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | job 6893852407 has completed (purged errors)
[2025-11-26 16:28:31] 2025-11-26 16:27:38,535 | INFO     | overall cleanup function is called
[2025-11-26 16:28:31] 2025-11-26 16:27:39,554 | INFO     | --- collectZombieJob: --- 10, [4127234]
[2025-11-26 16:28:31] 2025-11-26 16:27:39,554 | INFO     | zombie collector waiting for pid 4127234
[2025-11-26 16:28:31] 2025-11-26 16:27:39,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:28:31] 2025-11-26 16:27:39,554 | INFO     | collected zombie processes
[2025-11-26 16:28:31] 2025-11-26 16:27:39,555 | INFO     | will attempt to kill all subprocesses of pid=4127234
[2025-11-26 16:28:31] 2025-11-26 16:27:40,151 | INFO     | process IDs to be killed: [4127234] (in reverse order)
[2025-11-26 16:28:31] 2025-11-26 16:27:40,363 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:28:31] 2025-11-26 16:27:40,363 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:28:31] 2025-11-26 16:27:40,388 | INFO     | did not find any defunct processes belonging to 4127234
[2025-11-26 16:28:31] 2025-11-26 16:27:40,409 | INFO     | did not find any defunct processes belonging to 4127234
[2025-11-26 16:28:31] 2025-11-26 16:27:40,411 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:28:31] 2025-11-26 16:27:40,411 | INFO     | ready for new job
[2025-11-26 16:28:31] 2025-11-26 16:27:40,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:28:31] 2025-11-26 16:27:40,414 | INFO     | ***************************************
[2025-11-26 16:28:31] 2025-11-26 16:27:40,414 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:28:31] 2025-11-26 16:27:40,414 | INFO     | ***************************************
[2025-11-26 16:28:31] 2025-11-26 16:27:40,414 | INFO     | 
[2025-11-26 16:28:31] 2025-11-26 16:27:40,460 | INFO     | architecture information:
[2025-11-26 16:28:31] 2025-11-26 16:27:40,461 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:28:31] 2025-11-26 16:27:40,481 | INFO     | cat /etc/os-release:
[2025-11-26 16:28:31] NAME="CentOS Linux"
[2025-11-26 16:28:31] VERSION="7 (Core)"
[2025-11-26 16:28:31] ID="centos"
[2025-11-26 16:28:31] ID_LIKE="rhel fedora"
[2025-11-26 16:28:31] VERSION_ID="7"
[2025-11-26 16:28:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:28:31] ANSI_COLOR="0;31"
[2025-11-26 16:28:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:28:31] HOME_URL="https://www.centos.org/"
[2025-11-26 16:28:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:28:31] 
[2025-11-26 16:28:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:28:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:28:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:28:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:28:31] 
[2025-11-26 16:28:31] 2025-11-26 16:27:40,481 | INFO     | ***************************************
[2025-11-26 16:28:31] 2025-11-26 16:27:40,984 | INFO     | executing command: df -mP /var/lib/boinc/slots/35
[2025-11-26 16:28:31] 2025-11-26 16:27:41,008 | INFO     | sufficient remaining disk space (167837171712 B)
[2025-11-26 16:28:31] 2025-11-26 16:27:41,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:28:31] 2025-11-26 16:27:41,009 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:28:31] 2025-11-26 16:27:41,009 | INFO     | update_server=False
[2025-11-26 16:28:31] 2025-11-26 16:27:41,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:28:31] 2025-11-26 16:27:41,026 | INFO     | all job control threads have been joined
[2025-11-26 16:28:31] 2025-11-26 16:27:41,286 | INFO     | all data control threads have been joined
[2025-11-26 16:28:31] 2025-11-26 16:27:41,810 | INFO     | all payload control threads have been joined
[2025-11-26 16:28:31] 2025-11-26 16:27:41,953 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:28:31] 2025-11-26 16:27:41,953 | INFO     | aborting loop
[2025-11-26 16:28:31] 2025-11-26 16:27:42,014 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,032 | INFO     | [job] control thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,094 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,169 | INFO     | [job] validate thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:28:31] 2025-11-26 16:27:42,292 | INFO     | [data] control thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,369 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,516 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,531 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,745 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,816 | INFO     | [payload] control thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:42,958 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:43,183 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:43,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:28:31] 2025-11-26 16:27:43,612 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:44,255 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:44,272 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:28:31] 2025-11-26 16:27:44,525 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:27:48,277 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:28:31] 2025-11-26 16:28:12,039 | INFO     | PID=4119087 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:28:31] 2025-11-26 16:28:12,039 | INFO     | .. there are 3 such processes running
[2025-11-26 16:28:31] 2025-11-26 16:28:12,040 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:28:31] 2025-11-26 16:28:12,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:28:31] 2025-11-26 16:28:12,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:28:31] 2025-11-26 16:28:25,997 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:28:31] 2025-11-26 16:28:26,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761309214528)>', '<ExcThread(monitor, started 139760718837504)>']
[2025-11-26 16:28:31] 2025-11-26 16:28:27,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:28:31] 2025-11-26 16:28:27,116 | INFO     | [monitor] control thread has ended
[2025-11-26 16:28:31] 2025-11-26 16:28:31,311 | INFO     | all workflow threads have been joined
[2025-11-26 16:28:31] 2025-11-26 16:28:31,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:28:31] 2025-11-26 16:28:31,311 | INFO     | traces error code: 0
[2025-11-26 16:28:31] 2025-11-26 16:28:31,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:28:31] 2025-11-26 16:28:31,419 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:28:31] 2025-11-26 16:28:31,423 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:28:31] 2025-11-26 16:28:31,427 [wrapper] pilotpid: 4119087
[2025-11-26 16:28:31] 2025-11-26 16:28:31,430 [wrapper] Pilot exit status: 0
[2025-11-26 16:28:31] 2025-11-26 16:28:31,440 [wrapper] pandaids: 6893852407
[2025-11-26 16:28:31] 2025-11-26 16:28:31,604 [wrapper] cleanup supervisor_pilot   63157 4119088
[2025-11-26 16:28:31] 2025-11-26 16:28:31,607 [wrapper] Test setup, not cleaning
[2025-11-26 16:28:31] 2025-11-26 16:28:31,610 [wrapper] apfmon messages muted
[2025-11-26 16:28:31] 2025-11-26 16:28:31,612 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:28:31] 2025-11-26 16:28:31,615 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:28:31]  *** Error codes and diagnostics ***
[2025-11-26 16:28:31]     "exeErrorCode": 0,
[2025-11-26 16:28:31]     "exeErrorDiag": "",
[2025-11-26 16:28:31]     "pilotErrorCode": 0,
[2025-11-26 16:28:31]     "pilotErrorDiag": "",
[2025-11-26 16:28:31]  *** Listing of results directory ***
[2025-11-26 16:28:31] total 1311276
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:54 pilot3.tar.gz
[2025-11-26 16:28:31] -rwx------ 1 boinc boinc     36292 Nov 20 11:56 runpilot2-wrapper.sh
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:56 queuedata.json
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc       100 Nov 26 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:28:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 12:58 run_atlas
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc       105 Nov 26 12:58 job.xml
[2025-11-26 16:28:31] -rw-r--r-- 2 boinc boinc 408531965 Nov 26 12:58 EVNT.47493127._000379.pool.root.1
[2025-11-26 16:28:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 12:58 start_atlas.sh
[2025-11-26 16:28:31] drwxrwx--x 2 boinc boinc      4096 Nov 26 12:58 shared
[2025-11-26 16:28:31] -rw-r--r-- 2 boinc boinc    590100 Nov 26 12:58 input.tar.gz
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc      9415 Nov 26 12:58 init_data.xml
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 12:58 boinc_setup_complete
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 12:58 boinc_lockfile
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc      2786 Nov 26 12:58 pandaJob.out
[2025-11-26 16:28:31] -rw------- 1 boinc boinc    991830 Nov 26 12:59 agis_schedconf.cvmfs.json
[2025-11-26 16:28:31] drwx------ 5 boinc boinc      4096 Nov 26 12:59 pilot3
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc       532 Nov 26 16:19 boinc_task_state.xml
[2025-11-26 16:28:31] -rw------- 1 boinc boinc 922835878 Nov 26 16:26 HITS.47523449._003787.pool.root.1
[2025-11-26 16:28:31] -rw------- 1 boinc boinc      1040 Nov 26 16:27 memory_monitor_summary.json
[2025-11-26 16:28:31] -rw------- 1 boinc boinc   1516240 Nov 26 16:27 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:28:31] -rw------- 1 boinc boinc   1976315 Nov 26 16:27 log.47523449._003787.job.log.tgz.1
[2025-11-26 16:28:31] -rw------- 1 boinc boinc      8559 Nov 26 16:27 heartbeat.json
[2025-11-26 16:28:31] -rw------- 1 boinc boinc        95 Nov 26 16:28 pilot_heartbeat.json
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc        29 Nov 26 16:28 wrapper_checkpoint.txt
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc      8192 Nov 26 16:28 boinc_mmap_file
[2025-11-26 16:28:31] -rw------- 1 boinc boinc      4825 Nov 26 16:28 pilotlog.txt
[2025-11-26 16:28:31] -rw------- 1 boinc boinc   1752803 Nov 26 16:28 log.47523449._003787.job.log.1
[2025-11-26 16:28:31] -rw------- 1 boinc boinc       353 Nov 26 16:28 output.list
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc       620 Nov 26 16:28 runtime_log
[2025-11-26 16:28:31] -rw------- 1 boinc boinc   3747840 Nov 26 16:28 result.tar.gz
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc      8789 Nov 26 16:28 runtime_log.err
[2025-11-26 16:28:31] -rw------- 1 boinc boinc       650 Nov 26 16:28 DmOKDmrRIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYaGKDmfX9NDo.diag
[2025-11-26 16:28:31] -rw-r--r-- 1 boinc boinc     21013 Nov 26 16:28 stderr.txt
[2025-11-26 16:28:31] HITS file was successfully produced:
[2025-11-26 16:28:31] -rw------- 1 boinc boinc 922835878 Nov 26 16:26 shared/HITS.pool.root.1
[2025-11-26 16:28:31]  *** Contents of shared directory: ***
[2025-11-26 16:28:31] total 1304432
[2025-11-26 16:28:31] -rw-r--r-- 2 boinc boinc 408531965 Nov 26 12:58 ATLAS.root_0
[2025-11-26 16:28:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 12:58 start_atlas.sh
[2025-11-26 16:28:31] -rw-r--r-- 2 boinc boinc    590100 Nov 26 12:58 input.tar.gz
[2025-11-26 16:28:31] -rw------- 1 boinc boinc 922835878 Nov 26 16:26 HITS.pool.root.1
[2025-11-26 16:28:31] -rw------- 1 boinc boinc   3747840 Nov 26 16:28 result.tar.gz
16:28:33 (4114339): run_atlas exited; CPU time 144130.190040
16:28:33 (4114339): called boinc_finish(0)

</stderr_txt>
]]>

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