Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:11:41 (6200): wrapper (7.7.26015): starting
01:11:41 (6200): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 01:11:42] Arguments: --nthreads 8
[2025-11-27 01:11:42] Threads: 8
[2025-11-27 01:11:42] Checking for CVMFS
[2025-11-27 01:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:11:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:11:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:11:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:11:44] 2.11.2.0 18345 286007 140756 153340 1 85 14332761 25165824 1288 130560 63 125909198 99.888 78894686 2733 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 01:11:44] CVMFS is ok
[2025-11-27 01:11:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:11:44] Checking for apptainer binary...
[2025-11-27 01:11:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:11:44] Running /usr/bin/apptainer --version
[2025-11-27 01:11:44] apptainer version 1.3.2-1.el7
[2025-11-27 01:11:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:12:02] cg-vwn239.simple-grid.lan
[2025-11-27 01:12:02] apptainer works
[2025-11-27 01:12:02] Set ATHENA_PROC_NUMBER=8
[2025-11-27 01:12:02] Set ATHENA_CORE_NUMBER=8
[2025-11-27 01:12:02] Starting ATLAS job with PandaID=6892537359
[2025-11-27 01:12:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:43:20]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:43:20] 2025-11-27 23:42:17,595 | INFO     | monitor loop #5681: job 0:6892537359 is in state 'finished'
[2025-11-28 00:43:20] 2025-11-27 23:42:17,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:43:20] 2025-11-27 23:42:18,009 | INFO     | time since job start (84396s) is within the limit (172800.0s)
[2025-11-28 00:43:20] 2025-11-27 23:42:20,017 | INFO     | time since job start (84398s) is within the limit (172800.0s)
[2025-11-28 00:43:20] 2025-11-27 23:42:20,099 | INFO     | monitor loop #5682: job 0:6892537359 is in state 'finished'
[2025-11-28 00:43:20] 2025-11-27 23:42:20,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:43:20] 2025-11-27 23:42:22,024 | INFO     | time since job start (84400s) is within the limit (172800.0s)
[2025-11-28 00:43:20] 2025-11-27 23:42:22,614 | INFO     | monitor loop #5683: job 0:6892537359 is in state 'finished'
[2025-11-28 00:43:20] 2025-11-27 23:42:22,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:43:20] 2025-11-27 23:42:24,030 | INFO     | time since job start (84402s) is within the limit (172800.0s)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,118 | INFO     | monitor loop #5684: job 0:6892537359 is in state 'finished'
[2025-11-28 00:43:20] 2025-11-27 23:42:25,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,271 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:43:20] 2025-11-27 23:42:25,272 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:43:20] 2025-11-27 23:42:25,274 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6892537359/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,275 | INFO     | extracted standard info from prmon json
[2025-11-28 00:43:20] 2025-11-27 23:42:25,275 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:43:20] 2025-11-27 23:42:25,275 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:43:20] 2025-11-27 23:42:25,326 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:43:20] 2025-11-27 23:42:25,328 | INFO     | sum of square deviations: 804337030643.0693
[2025-11-28 00:43:20] 2025-11-27 23:42:25,395 | INFO     | sum of deviations: 2887838313455.0986
[2025-11-28 00:43:20] 2025-11-27 23:42:25,397 | INFO     | mean x: 1764244941.5684135
[2025-11-28 00:43:20] 2025-11-27 23:42:25,397 | INFO     | mean y: 2850799.6106259096
[2025-11-28 00:43:20] 2025-11-27 23:42:25,397 | INFO     | intersect: -6331377194.974266
[2025-11-28 00:43:20] 2025-11-27 23:42:25,399 | INFO     | chi2: 20.628182657348724
[2025-11-28 00:43:20] 2025-11-27 23:42:25,401 | INFO     | sum of square deviations: 795588412009.8413
[2025-11-28 00:43:20] 2025-11-27 23:42:25,462 | INFO     | sum of deviations: 3347288685751.0127
[2025-11-28 00:43:20] 2025-11-27 23:42:25,462 | INFO     | mean x: 1764244789.0723155
[2025-11-28 00:43:20] 2025-11-27 23:42:25,462 | INFO     | mean y: 2858806.9897735575
[2025-11-28 00:43:20] 2025-11-27 23:42:25,462 | INFO     | intersect: -7419869493.487148
[2025-11-28 00:43:20] 2025-11-27 23:42:25,464 | INFO     | chi2: 17.405109290271767
[2025-11-28 00:43:20] 2025-11-27 23:42:25,464 | INFO     | current chi2=17.405109290271767 (change=15.624611341749716 %)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,464 | INFO     | right removable region: 1368
[2025-11-28 00:43:20] 2025-11-27 23:42:25,466 | INFO     | sum of square deviations: 795587516529.8413
[2025-11-28 00:43:20] 2025-11-27 23:42:25,529 | INFO     | sum of deviations: 2299928577616.8145
[2025-11-28 00:43:20] 2025-11-27 23:42:25,529 | INFO     | mean x: 1764245094.0723155
[2025-11-28 00:43:20] 2025-11-27 23:42:25,529 | INFO     | mean y: 2861046.5069393716
[2025-11-28 00:43:20] 2025-11-27 23:42:25,529 | INFO     | intersect: -5097316652.956735
[2025-11-28 00:43:20] 2025-11-27 23:42:25,531 | INFO     | chi2: 15.765202069692613
[2025-11-28 00:43:20] 2025-11-27 23:42:25,531 | INFO     | current chi2=15.765202069692613 (change=23.574449908817776 %)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,532 | INFO     | left removable region: 10
[2025-11-28 00:43:20] 2025-11-27 23:42:25,533 | INFO     | sum of square deviations: 776563470764.5896
[2025-11-28 00:43:20] 2025-11-27 23:42:25,589 | INFO     | sum of deviations: 2367542994047.1504
[2025-11-28 00:43:20] 2025-11-27 23:42:25,589 | INFO     | mean x: 1764245063.5810015
[2025-11-28 00:43:20] 2025-11-27 23:42:25,589 | INFO     | mean y: 2879828.2849779087
[2025-11-28 00:43:20] 2025-11-27 23:42:25,589 | INFO     | intersect: -5375851205.703715
[2025-11-28 00:43:20] 2025-11-27 23:42:25,591 | INFO     | chi2: 8.257376955954532
[2025-11-28 00:43:20] 2025-11-27 23:42:25,591 | INFO     | current memory leak: 3.05 B/s (using 1358 data points, chi2=8.26)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,593 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 00:43:20] 2025-11-27 23:42:25,593 | INFO     | ..............................
[2025-11-28 00:43:20] 2025-11-27 23:42:25,593 | INFO     | . Timing measurements:
[2025-11-28 00:43:20] 2025-11-27 23:42:25,593 | INFO     | . get job = 0 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,593 | INFO     | . initial setup = 5 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,594 | INFO     | . payload setup = 142 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,594 | INFO     | . stage-in = 0 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,594 | INFO     | . payload execution = 83949 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,594 | INFO     | . stage-out = 5 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,594 | INFO     | . log creation = 2 s
[2025-11-28 00:43:20] 2025-11-27 23:42:25,594 | INFO     | ..............................
[2025-11-28 00:43:20] 2025-11-27 23:42:26,037 | INFO     | time since job start (84404s) is within the limit (172800.0s)
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | 
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | job summary report
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | --------------------------------------------------
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | PanDA job id: 6892537359
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | task id: 47493029
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | errors: (none)
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:43:20] 2025-11-27 23:42:26,154 | INFO     | pilot state: finished 
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | transexitcode: 0
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | exeerrorcode: 0
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | exeerrordiag: 
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | exitcode: 0
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | exitmsg: OK
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | cpuconsumptiontime: 316835 s
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | nevents: 1000
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | neventsw: 0
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | pid: 16553
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | pgrp: 16553
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | corecount: 8
[2025-11-28 00:43:20] 2025-11-27 23:42:26,155 | INFO     | event service: False
[2025-11-28 00:43:20] 2025-11-27 23:42:26,156 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284360, 13: 2284360, 24: 2284416, 35: 2284444, 45: 2284600, 56: 2284628, 67: 2284656, 78: 2284684, 88: 2284740, 99: 2285048, 10
[2025-11-28 00:43:20] 2025-11-27 23:42:26,156 | INFO     | --------------------------------------------------
[2025-11-28 00:43:20] 2025-11-27 23:42:26,156 | INFO     | 
[2025-11-28 00:43:20] 2025-11-27 23:42:26,156 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-28 00:43:20] 2025-11-27 23:42:26,632 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,632 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,632 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | job 6892537359 has completed (purged errors)
[2025-11-28 00:43:20] 2025-11-27 23:42:26,634 | INFO     | overall cleanup function is called
[2025-11-28 00:43:20] 2025-11-27 23:42:27,652 | INFO     | --- collectZombieJob: --- 10, [16553]
[2025-11-28 00:43:20] 2025-11-27 23:42:27,652 | INFO     | zombie collector waiting for pid 16553
[2025-11-28 00:43:20] 2025-11-27 23:42:27,652 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:43:20] 2025-11-27 23:42:27,652 | INFO     | collected zombie processes
[2025-11-28 00:43:20] 2025-11-27 23:42:27,652 | INFO     | will attempt to kill all subprocesses of pid=16553
[2025-11-28 00:43:20] 2025-11-27 23:42:27,781 | INFO     | process IDs to be killed: [16553] (in reverse order)
[2025-11-28 00:43:20] 2025-11-27 23:42:28,678 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:43:20] 2025-11-27 23:42:28,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:43:20] 2025-11-27 23:42:28,687 | INFO     | did not find any defunct processes belonging to 16553
[2025-11-28 00:43:20] 2025-11-27 23:42:28,690 | INFO     | did not find any defunct processes belonging to 16553
[2025-11-28 00:43:20] 2025-11-27 23:42:28,733 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:43:20] 2025-11-27 23:42:28,733 | INFO     | ready for new job
[2025-11-28 00:43:20] 2025-11-27 23:42:28,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:43:20] 2025-11-27 23:42:28,738 | INFO     | ***************************************
[2025-11-28 00:43:20] 2025-11-27 23:42:28,738 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:43:20] 2025-11-27 23:42:28,739 | INFO     | ***************************************
[2025-11-28 00:43:20] 2025-11-27 23:42:28,739 | INFO     | 
[2025-11-28 00:43:20] 2025-11-27 23:42:28,739 | INFO     | pilot is running in a VM
[2025-11-28 00:43:20] 2025-11-27 23:42:28,739 | INFO     | architecture information:
[2025-11-28 00:43:20] 2025-11-27 23:42:28,748 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:43:20] 2025-11-27 23:42:28,981 | INFO     | cat /etc/os-release:
[2025-11-28 00:43:20] NAME="CentOS Linux"
[2025-11-28 00:43:20] VERSION="7 (Core)"
[2025-11-28 00:43:20] ID="centos"
[2025-11-28 00:43:20] ID_LIKE="rhel fedora"
[2025-11-28 00:43:20] VERSION_ID="7"
[2025-11-28 00:43:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:43:20] ANSI_COLOR="0;31"
[2025-11-28 00:43:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:43:20] HOME_URL="https://www.centos.org/"
[2025-11-28 00:43:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:43:20] 
[2025-11-28 00:43:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:43:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:43:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:43:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:43:20] 
[2025-11-28 00:43:20] 2025-11-27 23:42:28,981 | INFO     | ***************************************
[2025-11-28 00:43:20] 2025-11-27 23:42:29,488 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-28 00:43:20] 2025-11-27 23:42:29,768 | INFO     | sufficient remaining disk space (495426994176 B)
[2025-11-28 00:43:20] 2025-11-27 23:42:29,769 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:43:20] 2025-11-27 23:42:29,769 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:43:20] 2025-11-27 23:42:29,769 | INFO     | update_server=False
[2025-11-28 00:43:20] 2025-11-27 23:42:29,769 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:43:20] 2025-11-27 23:42:29,854 | INFO     | all data control threads have been joined
[2025-11-28 00:43:20] 2025-11-27 23:42:30,133 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 00:43:20] 2025-11-27 23:42:30,133 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 00:43:20] 2025-11-27 23:42:30,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:43:20] 2025-11-27 23:42:30,133 | INFO     | will abort loop
[2025-11-28 00:43:20] 2025-11-27 23:42:30,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:43:20] 2025-11-27 23:42:30,470 | INFO     | all job control threads have been joined
[2025-11-28 00:43:20] 2025-11-27 23:42:30,606 | INFO     | all payload control threads have been joined
[2025-11-28 00:43:20] 2025-11-27 23:42:30,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:43:20] 2025-11-27 23:42:30,775 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:30,839 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:30,860 | INFO     | [data] control thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,139 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,231 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,476 | INFO     | [job] control thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,609 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,613 | INFO     | [payload] control thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,684 | INFO     | [job] validate thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,751 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:31,915 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:32,193 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:32,229 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:32,273 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:32,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:43:20] 2025-11-27 23:42:36,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:43:20] 2025-11-27 23:42:58,050 | INFO     | 84411s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 00:43:20] 2025-11-27 23:42:59,217 | INFO     | PID=9977 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 00:43:20] 2025-11-27 23:42:59,217 | INFO     | .. there are 9 such processes running
[2025-11-28 00:43:20] 2025-11-27 23:42:59,217 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:43:20] 2025-11-27 23:42:59,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:43:20] 2025-11-27 23:42:59,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:43:20] 2025-11-27 23:43:09,105 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:43:20] 2025-11-27 23:43:10,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140360367191872)>', '<ExcThread(monitor, started 140359791273728)>']
[2025-11-28 00:43:20] 2025-11-27 23:43:11,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:43:20] 2025-11-27 23:43:11,290 | INFO     | [monitor] control thread has ended
[2025-11-28 00:43:20] 2025-11-27 23:43:15,345 | INFO     | all workflow threads have been joined
[2025-11-28 00:43:20] 2025-11-27 23:43:15,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:43:20] 2025-11-27 23:43:15,345 | INFO     | traces error code: 0
[2025-11-28 00:43:20] 2025-11-27 23:43:15,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:43:20] 2025-11-27 23:43:15,601 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:43:20] 2025-11-27 23:43:15,687 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:43:20] 2025-11-27 23:43:15,761 [wrapper] pilotpid: 9977
[2025-11-28 00:43:20] 2025-11-27 23:43:15,856 [wrapper] Pilot exit status: 0
[2025-11-28 00:43:20] 2025-11-27 23:43:16,321 [wrapper] pandaids: 6892537359
[2025-11-28 00:43:20] 2025-11-27 23:43:17,263 [wrapper] cleanup supervisor_pilot 19437 9978
[2025-11-28 00:43:20] 2025-11-27 23:43:17,305 [wrapper] Test setup, not cleaning
[2025-11-28 00:43:20] 2025-11-27 23:43:17,350 [wrapper] apfmon messages muted
[2025-11-28 00:43:20] 2025-11-27 23:43:17,402 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:43:20] 2025-11-27 23:43:17,516 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:43:20]  *** Error codes and diagnostics ***
[2025-11-28 00:43:20]     "exeErrorCode": 0,
[2025-11-28 00:43:20]     "exeErrorDiag": "",
[2025-11-28 00:43:20]     "pilotErrorCode": 0,
[2025-11-28 00:43:20]     "pilotErrorDiag": "",
[2025-11-28 00:43:20]  *** Listing of results directory ***
[2025-11-28 00:43:20] total 1337948
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-28 00:43:20] -rwx------. 1 boinc boinc     36292 Nov 19 08:31 runpilot2-wrapper.sh
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:31 queuedata.json
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc       100 Nov 27 01:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:43:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 01:11 run_atlas
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc       105 Nov 27 01:11 job.xml
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc      6392 Nov 27 01:11 init_data.xml
[2025-11-28 00:43:20] -rw-r--r--. 2 boinc boinc 410727220 Nov 27 01:11 EVNT.47493027._000216.pool.root.1
[2025-11-28 00:43:20] -rw-r--r--. 2 boinc boinc     15120 Nov 27 01:11 start_atlas.sh
[2025-11-28 00:43:20] drwxrwx--x. 2 boinc boinc        68 Nov 27 01:11 shared
[2025-11-28 00:43:20] -rw-r--r--. 2 boinc boinc    590094 Nov 27 01:11 input.tar.gz
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc         0 Nov 27 01:11 boinc_lockfile
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc      2773 Nov 27 01:12 pandaJob.out
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc    991546 Nov 27 01:15 agis_schedconf.cvmfs.json
[2025-11-28 00:43:20] drwx------. 5 boinc boinc      4096 Nov 27 01:15 pilot3
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:18 boinc_task_state.xml
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc 928056371 Nov 28 00:39 HITS.47493029._002113.pool.root.1
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc      1026 Nov 28 00:40 memory_monitor_summary.json
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc   1516240 Nov 28 00:40 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc   2452331 Nov 28 00:40 log.47493029._002113.job.log.tgz.1
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc        95 Nov 28 00:42 pilot_heartbeat.json
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc      8641 Nov 28 00:42 heartbeat.json
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc      5185 Nov 28 00:43 pilotlog.txt
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc  11231762 Nov 28 00:43 log.47493029._002113.job.log.1
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:43 boinc_mmap_file
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:43 wrapper_checkpoint.txt
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc       353 Nov 28 00:43 output.list
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:43 runtime_log
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc  13701120 Nov 28 00:43 result.tar.gz
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc       662 Nov 28 00:43 UNpNDm9prf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmasGKDmeCPbLn.diag
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc      8703 Nov 28 00:43 runtime_log.err
[2025-11-28 00:43:20] -rw-r--r--. 1 boinc boinc     21433 Nov 28 00:43 stderr.txt
[2025-11-28 00:43:20] HITS file was successfully produced:
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc 928056371 Nov 28 00:39 shared/HITS.pool.root.1
[2025-11-28 00:43:20]  *** Contents of shared directory: ***
[2025-11-28 00:43:20] total 1321388
[2025-11-28 00:43:20] -rw-r--r--. 2 boinc boinc 410727220 Nov 27 01:11 ATLAS.root_0
[2025-11-28 00:43:20] -rw-r--r--. 2 boinc boinc     15120 Nov 27 01:11 start_atlas.sh
[2025-11-28 00:43:20] -rw-r--r--. 2 boinc boinc    590094 Nov 27 01:11 input.tar.gz
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc 928056371 Nov 28 00:39 HITS.pool.root.1
[2025-11-28 00:43:20] -rw-------. 1 boinc boinc  13701120 Nov 28 00:43 result.tar.gz
00:43:22 (6200): run_atlas exited; CPU time 317394.963508
00:43:22 (6200): called boinc_finish(0)

</stderr_txt>
]]>

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