Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:12 (27719): wrapper (7.7.26015): starting
02:00:12 (27719): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 02:00:12] Arguments: --nthreads 8
[2025-11-27 02:00:12] Threads: 8
[2025-11-27 02:00:12] Checking for CVMFS
[2025-11-27 02:00:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:00:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:00:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:00:15] 2.11.2.0 20077 286126 139632 153341 3 85 20582339 25165825 1288 130560 10 136875563 99.874 77140504 2619 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 02:00:15] CVMFS is ok
[2025-11-27 02:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:00:15] Checking for apptainer binary...
[2025-11-27 02:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:00:15] Running /usr/bin/apptainer --version
[2025-11-27 02:00:15] apptainer version 1.3.2-1.el7
[2025-11-27 02:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:00:36] cg-vwn315.simple-grid.lan
[2025-11-27 02:00:36] apptainer works
[2025-11-27 02:00:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 02:00:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 02:00:37] Starting ATLAS job with PandaID=6895354742
[2025-11-27 02:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:31:03]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:31:03] 2025-11-28 00:30:11,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:31:03] 2025-11-28 00:30:12,155 | INFO     | time since job start (84346s) is within the limit (172800.0s)
[2025-11-28 01:31:03] 2025-11-28 00:30:14,165 | INFO     | time since job start (84348s) is within the limit (172800.0s)
[2025-11-28 01:31:03] 2025-11-28 00:30:14,347 | INFO     | monitor loop #5671: job 0:6895354742 is in state 'finished'
[2025-11-28 01:31:03] 2025-11-28 00:30:14,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:31:03] 2025-11-28 00:30:15,390 | INFO     | PID=31511 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 01:31:03] 2025-11-28 00:30:15,391 | INFO     | .. there are 9 such processes running
[2025-11-28 01:31:03] 2025-11-28 00:30:16,392 | INFO     | time since job start (84350s) is within the limit (172800.0s)
[2025-11-28 01:31:03] 2025-11-28 00:30:16,855 | INFO     | monitor loop #5672: job 0:6895354742 is in state 'finished'
[2025-11-28 01:31:03] 2025-11-28 00:30:16,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:31:03] 2025-11-28 00:30:18,402 | INFO     | time since job start (84352s) is within the limit (172800.0s)
[2025-11-28 01:31:03] 2025-11-28 00:30:19,360 | INFO     | monitor loop #5673: job 0:6895354742 is in state 'finished'
[2025-11-28 01:31:03] 2025-11-28 00:30:19,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,306 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 01:31:03] 2025-11-28 00:30:20,307 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 01:31:03] 2025-11-28 00:30:20,309 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6895354742/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,310 | INFO     | extracted standard info from prmon json
[2025-11-28 01:31:03] 2025-11-28 00:30:20,310 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:31:03] 2025-11-28 00:30:20,310 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:31:03] 2025-11-28 00:30:20,340 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:31:03] 2025-11-28 00:30:20,342 | INFO     | sum of square deviations: 804336466777.3226
[2025-11-28 01:31:03] 2025-11-28 00:30:20,418 | INFO     | sum of deviations: 2759068284597.083
[2025-11-28 01:31:03] 2025-11-28 00:30:20,418 | INFO     | mean x: 1764247845.577147
[2025-11-28 01:31:03] 2025-11-28 00:30:20,418 | INFO     | mean y: 2842748.8435225617
[2025-11-28 01:31:03] 2025-11-28 00:30:20,418 | INFO     | intersect: -6048953331.475481
[2025-11-28 01:31:03] 2025-11-28 00:30:20,420 | INFO     | chi2: 22.638346774649456
[2025-11-28 01:31:03] 2025-11-28 00:30:20,422 | INFO     | sum of square deviations: 795587851803.9999
[2025-11-28 01:31:03] 2025-11-28 00:30:20,451 | INFO     | time since job start (84354s) is within the limit (172800.0s)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,488 | INFO     | sum of deviations: 3218457316512.655
[2025-11-28 01:31:03] 2025-11-28 00:30:20,489 | INFO     | mean x: 1764247693.0810812
[2025-11-28 01:31:03] 2025-11-28 00:30:20,489 | INFO     | mean y: 2850755.183345508
[2025-11-28 01:31:03] 2025-11-28 00:30:20,489 | INFO     | intersect: -7134206306.537907
[2025-11-28 01:31:03] 2025-11-28 00:30:20,491 | INFO     | chi2: 19.362555544011986
[2025-11-28 01:31:03] 2025-11-28 00:30:20,491 | INFO     | current chi2=19.362555544011986 (change=14.470099178380458 %)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,491 | INFO     | right removable region: 1368
[2025-11-28 01:31:03] 2025-11-28 00:30:20,493 | INFO     | sum of square deviations: 795586949004.0004
[2025-11-28 01:31:03] 2025-11-28 00:30:20,575 | INFO     | sum of deviations: 2175553510938.2705
[2025-11-28 01:31:03] 2025-11-28 00:30:20,575 | INFO     | mean x: 1764247998.0810812
[2025-11-28 01:31:03] 2025-11-28 00:30:20,575 | INFO     | mean y: 2852919.1146822497
[2025-11-28 01:31:03] 2025-11-28 00:30:20,575 | INFO     | intersect: -4821529797.565367
[2025-11-28 01:31:03] 2025-11-28 00:30:20,583 | INFO     | chi2: 17.84130479874748
[2025-11-28 01:31:03] 2025-11-28 00:30:20,583 | INFO     | current chi2=17.84130479874748 (change=21.189895285435462 %)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,583 | INFO     | left removable region: 10
[2025-11-28 01:31:03] 2025-11-28 00:30:20,585 | INFO     | sum of square deviations: 776562903970.5414
[2025-11-28 01:31:03] 2025-11-28 00:30:20,663 | INFO     | sum of deviations: 2246249496125.681
[2025-11-28 01:31:03] 2025-11-28 00:30:20,664 | INFO     | mean x: 1764247967.589838
[2025-11-28 01:31:03] 2025-11-28 00:30:20,664 | INFO     | mean y: 2871652.7157584685
[2025-11-28 01:31:03] 2025-11-28 00:30:20,664 | INFO     | intersect: -5100309413.46322
[2025-11-28 01:31:03] 2025-11-28 00:30:20,666 | INFO     | chi2: 10.296400648431566
[2025-11-28 01:31:03] 2025-11-28 00:30:20,666 | INFO     | current memory leak: 2.89 B/s (using 1358 data points, chi2=10.30)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,667 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,667 | INFO     | ..............................
[2025-11-28 01:31:03] 2025-11-28 00:30:20,667 | INFO     | . Timing measurements:
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . get job = 0 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . initial setup = 13 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . payload setup = 142 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . stage-in = 0 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . payload execution = 83920 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . stage-out = 5 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | . log creation = 2 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,668 | INFO     | ..............................
[2025-11-28 01:31:03] 2025-11-28 00:30:20,792 | INFO     | 
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | job summary report
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | --------------------------------------------------
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | PanDA job id: 6895354742
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | task id: 47556137
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | errors: (none)
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:31:03] 2025-11-28 00:30:20,793 | INFO     | pilot state: finished 
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | transexitcode: 0
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | exeerrorcode: 0
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | exeerrordiag: 
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | exitcode: 0
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | exitmsg: OK
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | cpuconsumptiontime: 316794 s
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | nevents: 1000
[2025-11-28 01:31:03] 2025-11-28 00:30:20,794 | INFO     | neventsw: 0
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | pid: 5739
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | pgrp: 5739
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | corecount: 8
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | event service: False
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 13: 2284321, 24: 2284377, 34: 2284405, 45: 2284561, 56: 2284589, 66: 2284617, 77: 2284645, 88: 2284701, 99: 2285009, 10
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | --------------------------------------------------
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | 
[2025-11-28 01:31:03] 2025-11-28 00:30:20,795 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2025-11-28 01:31:03] 2025-11-28 00:30:21,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,205 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:31:03] 2025-11-28 00:30:21,206 | INFO     | job 6895354742 has completed (purged errors)
[2025-11-28 01:31:03] 2025-11-28 00:30:21,206 | INFO     | overall cleanup function is called
[2025-11-28 01:31:03] 2025-11-28 00:30:22,221 | INFO     | --- collectZombieJob: --- 10, [5739]
[2025-11-28 01:31:03] 2025-11-28 00:30:22,221 | INFO     | zombie collector waiting for pid 5739
[2025-11-28 01:31:03] 2025-11-28 00:30:22,221 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:31:03] 2025-11-28 00:30:22,221 | INFO     | collected zombie processes
[2025-11-28 01:31:03] 2025-11-28 00:30:22,221 | INFO     | will attempt to kill all subprocesses of pid=5739
[2025-11-28 01:31:03] 2025-11-28 00:30:22,332 | INFO     | process IDs to be killed: [5739] (in reverse order)
[2025-11-28 01:31:03] 2025-11-28 00:30:23,230 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:31:03] 2025-11-28 00:30:23,231 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:31:03] 2025-11-28 00:30:23,234 | INFO     | did not find any defunct processes belonging to 5739
[2025-11-28 01:31:03] 2025-11-28 00:30:23,236 | INFO     | did not find any defunct processes belonging to 5739
[2025-11-28 01:31:03] 2025-11-28 00:30:23,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:31:03] 2025-11-28 00:30:23,277 | INFO     | ready for new job
[2025-11-28 01:31:03] 2025-11-28 00:30:23,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:31:03] 2025-11-28 00:30:23,282 | INFO     | ***************************************
[2025-11-28 01:31:03] 2025-11-28 00:30:23,283 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:31:03] 2025-11-28 00:30:23,283 | INFO     | ***************************************
[2025-11-28 01:31:03] 2025-11-28 00:30:23,283 | INFO     | 
[2025-11-28 01:31:03] 2025-11-28 00:30:23,283 | INFO     | pilot is running in a VM
[2025-11-28 01:31:03] 2025-11-28 00:30:23,284 | INFO     | architecture information:
[2025-11-28 01:31:03] 2025-11-28 00:30:23,289 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:31:03] 2025-11-28 00:30:23,431 | INFO     | cat /etc/os-release:
[2025-11-28 01:31:03] NAME="CentOS Linux"
[2025-11-28 01:31:03] VERSION="7 (Core)"
[2025-11-28 01:31:03] ID="centos"
[2025-11-28 01:31:03] ID_LIKE="rhel fedora"
[2025-11-28 01:31:03] VERSION_ID="7"
[2025-11-28 01:31:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:31:03] ANSI_COLOR="0;31"
[2025-11-28 01:31:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:31:03] HOME_URL="https://www.centos.org/"
[2025-11-28 01:31:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:31:03] 
[2025-11-28 01:31:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:31:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:31:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:31:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:31:03] 
[2025-11-28 01:31:03] 2025-11-28 00:30:23,432 | INFO     | ***************************************
[2025-11-28 01:31:03] 2025-11-28 00:30:23,935 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2025-11-28 01:31:03] 2025-11-28 00:30:24,177 | INFO     | sufficient remaining disk space (495343108096 B)
[2025-11-28 01:31:03] 2025-11-28 00:30:24,178 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:31:03] 2025-11-28 00:30:24,178 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:31:03] 2025-11-28 00:30:24,178 | INFO     | update_server=False
[2025-11-28 01:31:03] 2025-11-28 00:30:24,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:31:03] 2025-11-28 00:30:24,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:31:03] 2025-11-28 00:30:24,370 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:31:03] 2025-11-28 00:30:24,407 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 01:31:03] 2025-11-28 00:30:24,407 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 01:31:03] 2025-11-28 00:30:24,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:31:03] 2025-11-28 00:30:24,407 | INFO     | will abort loop
[2025-11-28 01:31:03] 2025-11-28 00:30:24,413 | INFO     | all payload control threads have been joined
[2025-11-28 01:31:03] 2025-11-28 00:30:25,014 | INFO     | all data control threads have been joined
[2025-11-28 01:31:03] 2025-11-28 00:30:25,184 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,275 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,413 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,419 | INFO     | [payload] control thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,493 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,498 | INFO     | [job] validate thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,807 | INFO     | all job control threads have been joined
[2025-11-28 01:31:03] 2025-11-28 00:30:25,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:31:03] 2025-11-28 00:30:25,882 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:25,955 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,020 | INFO     | [data] control thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,058 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,362 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,377 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,605 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,813 | INFO     | [job] control thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:26,823 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:28,188 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:31:03] 2025-11-28 00:30:53,061 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:31:03] 2025-11-28 00:30:53,644 | INFO     | PID=31511 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 01:31:03] 2025-11-28 00:30:53,645 | INFO     | .. there are 9 such processes running
[2025-11-28 01:31:03] 2025-11-28 00:30:53,646 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:31:03] 2025-11-28 00:30:53,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:31:03] 2025-11-28 00:30:53,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:31:03] 2025-11-28 00:30:54,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140353547384640)>', '<ExcThread(monitor, started 140352887453440)>']
[2025-11-28 01:31:03] 2025-11-28 00:30:54,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:31:03] 2025-11-28 00:30:54,652 | INFO     | [monitor] control thread has ended
[2025-11-28 01:31:03] 2025-11-28 00:30:59,094 | INFO     | all workflow threads have been joined
[2025-11-28 01:31:03] 2025-11-28 00:30:59,094 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:31:03] 2025-11-28 00:30:59,094 | INFO     | traces error code: 0
[2025-11-28 01:31:03] 2025-11-28 00:30:59,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:31:03] 2025-11-28 00:30:59,392 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:31:03] 2025-11-28 00:30:59,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:31:03] 2025-11-28 00:30:59,537 [wrapper] pilotpid: 31511
[2025-11-28 01:31:03] 2025-11-28 00:30:59,665 [wrapper] Pilot exit status: 0
[2025-11-28 01:31:03] 2025-11-28 00:31:00,113 [wrapper] pandaids: 6895354742
[2025-11-28 01:31:03] 2025-11-28 00:31:01,136 [wrapper] cleanup supervisor_pilot 23800 31512
[2025-11-28 01:31:03] 2025-11-28 00:31:01,183 [wrapper] Test setup, not cleaning
[2025-11-28 01:31:03] 2025-11-28 00:31:01,281 [wrapper] apfmon messages muted
[2025-11-28 01:31:03] 2025-11-28 00:31:01,365 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:31:03] 2025-11-28 00:31:01,393 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:31:03]  *** Error codes and diagnostics ***
[2025-11-28 01:31:03]     "exeErrorCode": 0,
[2025-11-28 01:31:03]     "exeErrorDiag": "",
[2025-11-28 01:31:03]     "pilotErrorCode": 0,
[2025-11-28 01:31:03]     "pilotErrorDiag": "",
[2025-11-28 01:31:03]  *** Listing of results directory ***
[2025-11-28 01:31:03] total 1334364
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-28 01:31:03] -rwx------. 1 boinc boinc     36292 Nov 23 06:32 runpilot2-wrapper.sh
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc      5112 Nov 23 06:32 queuedata.json
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc       100 Nov 27 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:31:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 02:00 run_atlas
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc       105 Nov 27 02:00 job.xml
[2025-11-28 01:31:03] -rw-r--r--. 2 boinc boinc 412447581 Nov 27 02:00 EVNT.47483658._000631.pool.root.1
[2025-11-28 01:31:03] -rw-r--r--. 2 boinc boinc    590096 Nov 27 02:00 input.tar.gz
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc      6391 Nov 27 02:00 init_data.xml
[2025-11-28 01:31:03] -rw-r--r--. 2 boinc boinc     15847 Nov 27 02:00 start_atlas.sh
[2025-11-28 01:31:03] drwxrwx--x. 2 boinc boinc        68 Nov 27 02:00 shared
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc         0 Nov 27 02:00 boinc_lockfile
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc      2785 Nov 27 02:00 pandaJob.out
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc    991546 Nov 27 02:04 agis_schedconf.cvmfs.json
[2025-11-28 01:31:03] drwx------. 5 boinc boinc      4096 Nov 27 02:04 pilot3
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc       533 Nov 28 01:07 boinc_task_state.xml
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc 922641611 Nov 28 01:27 HITS.47556137._006263.pool.root.1
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc      1029 Nov 28 01:28 memory_monitor_summary.json
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc   1516240 Nov 28 01:28 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc   2459340 Nov 28 01:28 log.47556137._006263.job.log.tgz.1
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc      8630 Nov 28 01:30 heartbeat.json
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc        29 Nov 28 01:30 wrapper_checkpoint.txt
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc      8192 Nov 28 01:30 boinc_mmap_file
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc        95 Nov 28 01:30 pilot_heartbeat.json
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc      5071 Nov 28 01:30 pilotlog.txt
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc  11236980 Nov 28 01:31 log.47556137._006263.job.log.1
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc       353 Nov 28 01:31 output.list
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc       620 Nov 28 01:31 runtime_log
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc  13711360 Nov 28 01:31 result.tar.gz
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc      8833 Nov 28 01:31 runtime_log.err
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc       662 Nov 28 01:31 PlyMDmVtHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPfKKDmYQT7dm.diag
[2025-11-28 01:31:03] -rw-r--r--. 1 boinc boinc     21490 Nov 28 01:31 stderr.txt
[2025-11-28 01:31:03] HITS file was successfully produced:
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc 922641611 Nov 28 01:27 shared/HITS.pool.root.1
[2025-11-28 01:31:03]  *** Contents of shared directory: ***
[2025-11-28 01:31:03] total 1317792
[2025-11-28 01:31:03] -rw-r--r--. 2 boinc boinc 412447581 Nov 27 02:00 ATLAS.root_0
[2025-11-28 01:31:03] -rw-r--r--. 2 boinc boinc    590096 Nov 27 02:00 input.tar.gz
[2025-11-28 01:31:03] -rw-r--r--. 2 boinc boinc     15847 Nov 27 02:00 start_atlas.sh
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc 922641611 Nov 28 01:27 HITS.pool.root.1
[2025-11-28 01:31:03] -rw-------. 1 boinc boinc  13711360 Nov 28 01:31 result.tar.gz
01:31:05 (27719): run_atlas exited; CPU time 317370.536244
01:31:05 (27719): called boinc_finish(0)

</stderr_txt>
]]>

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