Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:25:31 (647611): wrapper (7.7.26015): starting
10:25:31 (647611): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 10:25:31] Arguments: --nthreads 12
[2025-11-25 10:25:31] Threads: 12
[2025-11-25 10:25:31] Checking for CVMFS
[2025-11-25 10:25:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 10:25:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 10:25:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 10:25:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 10:25:32] 2.13.3.0 9008 25634 405680 153277 1 92 44559284 46080001 7160 130560 0 149772399 99.887 50491697 27386 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-25 10:25:32] CVMFS is ok
[2025-11-25 10:25:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 10:25:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 10:25:32] Further information can be found at the LHC@home message board.
[2025-11-25 10:25:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 10:25:32] Checking for apptainer binary...
[2025-11-25 10:25:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 10:25:32] Running /usr/bin/apptainer --version
[2025-11-25 10:25:32] apptainer version 1.4.3-1.el9
[2025-11-25 10:25:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 10:25:32] mff2103.farm.particle.cz
[2025-11-25 10:25:32] apptainer works
[2025-11-25 10:25:32] Set ATHENA_PROC_NUMBER=12
[2025-11-25 10:25:32] Set ATHENA_CORE_NUMBER=12
[2025-11-25 10:25:32] Starting ATLAS job with PandaID=6894250336
[2025-11-25 10:25:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 16:03:24]  *** The last 200 lines of the pilot log: ***
[2025-11-25 16:03:24] 2025-11-25 15:02:33,788 | INFO     | time since job start (20209s) is within the limit (172800.0s)
[2025-11-25 16:03:24] 2025-11-25 15:02:35,795 | INFO     | time since job start (20211s) is within the limit (172800.0s)
[2025-11-25 16:03:24] 2025-11-25 15:02:35,967 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 16:03:24] 2025-11-25 15:02:35,982 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2765.0949166666674
[2025-11-25 16:03:24] 2025-11-25 15:02:36,000 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6894250336/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,001 | INFO     | extracted standard info from prmon json
[2025-11-25 16:03:24] 2025-11-25 15:02:36,001 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 16:03:24] 2025-11-25 15:02:36,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 16:03:24] 2025-11-25 15:02:36,007 | INFO     | fitting pss+swap vs Time
[2025-11-25 16:03:24] 2025-11-25 15:02:36,008 | INFO     | sum of square deviations: 11244773956.53777
[2025-11-25 16:03:24] 2025-11-25 15:02:36,011 | INFO     | sum of deviations: 195407053784.8161
[2025-11-25 16:03:24] 2025-11-25 15:02:36,011 | INFO     | mean x: 1764072842.0664651
[2025-11-25 16:03:24] 2025-11-25 15:02:36,011 | INFO     | mean y: 3439988.2356495466
[2025-11-25 16:03:24] 2025-11-25 15:02:36,011 | INFO     | intersect: -30651891818.554268
[2025-11-25 16:03:24] 2025-11-25 15:02:36,012 | INFO     | chi2: 5.856128756123182
[2025-11-25 16:03:24] 2025-11-25 15:02:36,012 | INFO     | sum of square deviations: 10742946623.263754
[2025-11-25 16:03:24] 2025-11-25 15:02:36,015 | INFO     | sum of deviations: 326902267277.0187
[2025-11-25 16:03:24] 2025-11-25 15:02:36,015 | INFO     | mean x: 1764072689.582822
[2025-11-25 16:03:24] 2025-11-25 15:02:36,015 | INFO     | mean y: 3479916.610429448
[2025-11-25 16:03:24] 2025-11-25 15:02:36,015 | INFO     | intersect: -53676332716.66646
[2025-11-25 16:03:24] 2025-11-25 15:02:36,016 | INFO     | chi2: 2.614649766131037
[2025-11-25 16:03:24] 2025-11-25 15:02:36,016 | INFO     | current chi2=2.614649766131037 (change=55.35190780432973 %)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,016 | INFO     | sum of square deviations: 10256223076.380064
[2025-11-25 16:03:24] 2025-11-25 15:02:36,019 | INFO     | sum of deviations: 356297027087.06525
[2025-11-25 16:03:24] 2025-11-25 15:02:36,019 | INFO     | mean x: 1764072537.0903428
[2025-11-25 16:03:24] 2025-11-25 15:02:36,019 | INFO     | mean y: 3489042.859813084
[2025-11-25 16:03:24] 2025-11-25 15:02:36,019 | INFO     | intersect: -61279674929.92177
[2025-11-25 16:03:24] 2025-11-25 15:02:36,020 | INFO     | chi2: 2.206815927036013
[2025-11-25 16:03:24] 2025-11-25 15:02:36,020 | INFO     | current chi2=2.206815927036013 (change=15.598029394908435 %)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,020 | INFO     | right removable region: 320
[2025-11-25 16:03:24] 2025-11-25 15:02:36,020 | INFO     | sum of square deviations: 10742771311.58281
[2025-11-25 16:03:24] 2025-11-25 15:02:36,023 | INFO     | sum of deviations: 93910222177.35582
[2025-11-25 16:03:24] 2025-11-25 15:02:36,023 | INFO     | mean x: 1764072994.576687
[2025-11-25 16:03:24] 2025-11-25 15:02:36,023 | INFO     | mean y: 3470689.125766871
[2025-11-25 16:03:24] 2025-11-25 15:02:36,024 | INFO     | intersect: -15417548901.894602
[2025-11-25 16:03:24] 2025-11-25 15:02:36,024 | INFO     | chi2: 3.788951050869486
[2025-11-25 16:03:24] 2025-11-25 15:02:36,024 | INFO     | current chi2=3.788951050869486 (change=35.29938960259796 %)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,024 | INFO     | sum of square deviations: 10256051058.49216
[2025-11-25 16:03:24] 2025-11-25 15:02:36,027 | INFO     | sum of deviations: 69408975154.19632
[2025-11-25 16:03:24] 2025-11-25 15:02:36,027 | INFO     | mean x: 1764073147.0685358
[2025-11-25 16:03:24] 2025-11-25 15:02:36,027 | INFO     | mean y: 3478350.6728971964
[2025-11-25 16:03:24] 2025-11-25 15:02:36,027 | INFO     | intersect: -11935084409.667566
[2025-11-25 16:03:24] 2025-11-25 15:02:36,028 | INFO     | chi2: 3.7322342441036063
[2025-11-25 16:03:24] 2025-11-25 15:02:36,028 | INFO     | current chi2=3.7322342441036063 (change=1.4968999600262534 %)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,028 | INFO     | left removable region: 20
[2025-11-25 16:03:24] 2025-11-25 15:02:36,028 | INFO     | sum of square deviations: 8372133208.746629
[2025-11-25 16:03:24] 2025-11-25 15:02:36,031 | INFO     | sum of deviations: 195571907608.4669
[2025-11-25 16:03:24] 2025-11-25 15:02:36,031 | INFO     | mean x: 1764073116.5866666
[2025-11-25 16:03:24] 2025-11-25 15:02:36,031 | INFO     | mean y: 3540912.1166666667
[2025-11-25 16:03:24] 2025-11-25 15:02:36,031 | INFO     | intersect: -41204970224.714294
[2025-11-25 16:03:24] 2025-11-25 15:02:36,032 | INFO     | chi2: 0.019566516484106757
[2025-11-25 16:03:24] 2025-11-25 15:02:36,032 | INFO     | current memory leak: 23.36 B/s (using 300 data points, chi2=0.02)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,032 | INFO     | could have reported an average CPU frequency of 2724 MHz (14 samples)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | ..............................
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . Timing measurements:
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . get job = 0 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . initial setup = 1 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . payload setup = 7 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . stage-in = 0 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . payload execution = 20172 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . stage-out = 2 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | . log creation = 0 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,033 | INFO     | ..............................
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | 
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | job summary report
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | --------------------------------------------------
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | PanDA job id: 6894250336
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | task id: 47533967
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | errors: (none)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 16:03:24] 2025-11-25 15:02:36,552 | INFO     | pilot state: finished 
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | transexitcode: 0
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | exeerrorcode: 0
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | exeerrordiag: 
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | exitcode: 0
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | exitmsg: OK
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | cpuconsumptiontime: 230569 s
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | nevents: 1000
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | neventsw: 0
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | pid: 658783
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | pgrp: 658783
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | corecount: 12
[2025-11-25 16:03:24] 2025-11-25 15:02:36,553 | INFO     | event service: False
[2025-11-25 16:03:24] 2025-11-25 15:02:36,554 | INFO     | sizes: {0: 2284087, 1: 2284342, 7: 2284604, 12: 2284632, 20183: 2319228, 20184: 2319227, 20187: 2328407, 20188: 2328463, 20195: 2328709}
[2025-11-25 16:03:24] 2025-11-25 15:02:36,554 | INFO     | --------------------------------------------------
[2025-11-25 16:03:24] 2025-11-25 15:02:36,554 | INFO     | 
[2025-11-25 16:03:24] 2025-11-25 15:02:36,554 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,580 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 16:03:24] 2025-11-25 15:02:36,581 | INFO     | job 6894250336 has completed (purged errors)
[2025-11-25 16:03:24] 2025-11-25 15:02:36,581 | INFO     | overall cleanup function is called
[2025-11-25 16:03:24] 2025-11-25 15:02:37,599 | INFO     | --- collectZombieJob: --- 10, [658783]
[2025-11-25 16:03:24] 2025-11-25 15:02:37,600 | INFO     | zombie collector waiting for pid 658783
[2025-11-25 16:03:24] 2025-11-25 15:02:37,600 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 16:03:24] 2025-11-25 15:02:37,600 | INFO     | collected zombie processes
[2025-11-25 16:03:24] 2025-11-25 15:02:37,600 | INFO     | will attempt to kill all subprocesses of pid=658783
[2025-11-25 16:03:24] 2025-11-25 15:02:37,984 | INFO     | process IDs to be killed: [658783] (in reverse order)
[2025-11-25 16:03:24] 2025-11-25 15:02:38,111 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 16:03:24] 2025-11-25 15:02:38,111 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 16:03:24] 2025-11-25 15:02:38,124 | INFO     | did not find any defunct processes belonging to 658783
[2025-11-25 16:03:24] 2025-11-25 15:02:38,135 | INFO     | did not find any defunct processes belonging to 658783
[2025-11-25 16:03:24] 2025-11-25 15:02:38,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 16:03:24] 2025-11-25 15:02:38,137 | INFO     | ready for new job
[2025-11-25 16:03:24] 2025-11-25 15:02:38,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 16:03:24] 2025-11-25 15:02:38,141 | INFO     | ***************************************
[2025-11-25 16:03:24] 2025-11-25 15:02:38,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 16:03:24] 2025-11-25 15:02:38,141 | INFO     | ***************************************
[2025-11-25 16:03:24] 2025-11-25 15:02:38,141 | INFO     | 
[2025-11-25 16:03:24] 2025-11-25 15:02:38,148 | INFO     | architecture information:
[2025-11-25 16:03:24] 2025-11-25 15:02:38,149 | INFO     | executing command: cat /etc/os-release
[2025-11-25 16:03:24] 2025-11-25 15:02:38,169 | INFO     | cat /etc/os-release:
[2025-11-25 16:03:24] NAME="CentOS Linux"
[2025-11-25 16:03:24] VERSION="7 (Core)"
[2025-11-25 16:03:24] ID="centos"
[2025-11-25 16:03:24] ID_LIKE="rhel fedora"
[2025-11-25 16:03:24] VERSION_ID="7"
[2025-11-25 16:03:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 16:03:24] ANSI_COLOR="0;31"
[2025-11-25 16:03:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 16:03:24] HOME_URL="https://www.centos.org/"
[2025-11-25 16:03:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 16:03:24] 
[2025-11-25 16:03:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 16:03:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 16:03:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 16:03:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 16:03:24] 
[2025-11-25 16:03:24] 2025-11-25 15:02:38,170 | INFO     | ***************************************
[2025-11-25 16:03:24] 2025-11-25 15:02:38,671 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-11-25 16:03:24] 2025-11-25 15:02:38,693 | INFO     | sufficient remaining disk space (1669819531264 B)
[2025-11-25 16:03:24] 2025-11-25 15:02:38,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 16:03:24] 2025-11-25 15:02:38,694 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 16:03:24] 2025-11-25 15:02:38,694 | INFO     | update_server=False
[2025-11-25 16:03:24] 2025-11-25 15:02:38,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 16:03:24] 2025-11-25 15:02:39,044 | INFO     | all data control threads have been joined
[2025-11-25 16:03:24] 2025-11-25 15:02:39,107 | INFO     | all payload control threads have been joined
[2025-11-25 16:03:24] 2025-11-25 15:02:39,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 16:03:24] 2025-11-25 15:02:39,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:03:24] 2025-11-25 15:02:39,643 | INFO     | aborting loop
[2025-11-25 16:03:24] 2025-11-25 15:02:39,681 | INFO     | all job control threads have been joined
[2025-11-25 16:03:24] 2025-11-25 15:02:39,699 | INFO     | [job] retrieve thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:39,785 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:39,833 | INFO     | [data] copytool_in thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,045 | INFO     | [data] control thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,071 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,115 | INFO     | [payload] control thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,159 | INFO     | [payload] failed_post thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,336 | INFO     | [job] validate thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 16:03:24] 2025-11-25 15:02:40,648 | INFO     | [job] job monitor thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,656 | INFO     | [payload] validate_post thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,686 | INFO     | [job] control thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:40,948 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:41,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 16:03:24] 2025-11-25 15:02:41,142 | INFO     | [data] copytool_out thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:42,140 | INFO     | [job] queue monitor thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:44,568 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:02:49,500 | INFO     | job.realtimelogging is not enabled
[2025-11-25 16:03:24] 2025-11-25 15:02:50,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 16:03:24] 2025-11-25 15:03:09,361 | INFO     | PID=651689 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 16:03:24] 2025-11-25 15:03:09,362 | INFO     | .. there are 8 such processes running
[2025-11-25 16:03:24] 2025-11-25 15:03:09,362 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 16:03:24] 2025-11-25 15:03:09,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 16:03:24] 2025-11-25 15:03:09,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 16:03:24] 2025-11-25 15:03:18,056 | INFO     | [monitor] cgroup control has ended
[2025-11-25 16:03:24] 2025-11-25 15:03:18,895 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139863368804160)>', '<ExcThread(monitor, started 139862447482624)>']
[2025-11-25 16:03:24] 2025-11-25 15:03:19,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 16:03:24] 2025-11-25 15:03:19,421 | INFO     | [monitor] control thread has ended
[2025-11-25 16:03:24] 2025-11-25 15:03:23,920 | INFO     | all workflow threads have been joined
[2025-11-25 16:03:24] 2025-11-25 15:03:23,920 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 16:03:24] 2025-11-25 15:03:23,921 | INFO     | traces error code: 0
[2025-11-25 16:03:24] 2025-11-25 15:03:23,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 16:03:24] 2025-11-25 15:03:24,069 [wrapper] ==== pilot stdout END ====
[2025-11-25 16:03:24] 2025-11-25 15:03:24,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 16:03:24] 2025-11-25 15:03:24,078 [wrapper] pilotpid: 651689
[2025-11-25 16:03:24] 2025-11-25 15:03:24,082 [wrapper] Pilot exit status: 0
[2025-11-25 16:03:24] 2025-11-25 15:03:24,095 [wrapper] pandaids: 6894250336
[2025-11-25 16:03:24] 2025-11-25 15:03:24,181 [wrapper] cleanup supervisor_pilot 1122563 651690
[2025-11-25 16:03:24] 2025-11-25 15:03:24,186 [wrapper] Test setup, not cleaning
[2025-11-25 16:03:24] 2025-11-25 15:03:24,190 [wrapper] apfmon messages muted
[2025-11-25 16:03:24] 2025-11-25 15:03:24,193 [wrapper] ==== wrapper stdout END ====
[2025-11-25 16:03:24] 2025-11-25 15:03:24,197 [wrapper] ==== wrapper stderr END ====
[2025-11-25 16:03:24]  *** Error codes and diagnostics ***
[2025-11-25 16:03:24]     "exeErrorCode": 0,
[2025-11-25 16:03:24]     "exeErrorDiag": "",
[2025-11-25 16:03:24]     "pilotErrorCode": 0,
[2025-11-25 16:03:24]     "pilotErrorDiag": "",
[2025-11-25 16:03:24]  *** Listing of results directory ***
[2025-11-25 16:03:24] total 1317932
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc    576529 Nov 21 02:08 pilot3.tar.gz
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc      5112 Nov 21 02:52 queuedata.json
[2025-11-25 16:03:24] -rwx------ 1 boinc boinc     36292 Nov 21 02:54 runpilot2-wrapper.sh
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc       100 Nov 25 10:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 16:03:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 10:25 run_atlas
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc       105 Nov 25 10:25 job.xml
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc      6665 Nov 25 10:25 init_data.xml
[2025-11-25 16:03:24] -rw-r--r-- 2 boinc boinc 410854098 Nov 25 10:25 EVNT.47493127._002105.pool.root.1
[2025-11-25 16:03:24] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:25 start_atlas.sh
[2025-11-25 16:03:24] drwxrwx--x 2 boinc boinc      4096 Nov 25 10:25 shared
[2025-11-25 16:03:24] -rw-r--r-- 2 boinc boinc    590104 Nov 25 10:25 input.tar.gz
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc         0 Nov 25 10:25 boinc_lockfile
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc      2785 Nov 25 10:25 pandaJob.out
[2025-11-25 16:03:24] -rw------- 1 boinc boinc    991894 Nov 25 10:25 agis_schedconf.cvmfs.json
[2025-11-25 16:03:24] drwx------ 5 boinc boinc      4096 Nov 25 10:25 pilot3
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc       533 Nov 25 15:52 boinc_task_state.xml
[2025-11-25 16:03:24] -rw------- 1 boinc boinc 924974971 Nov 25 16:01 HITS.47533967._000770.pool.root.1
[2025-11-25 16:03:24] -rw------- 1 boinc boinc      1035 Nov 25 16:02 memory_monitor_summary.json
[2025-11-25 16:03:24] -rw------- 1 boinc boinc   1516240 Nov 25 16:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 16:03:24] -rw------- 1 boinc boinc   2094321 Nov 25 16:02 log.47533967._000770.job.log.tgz.1
[2025-11-25 16:03:24] -rw------- 1 boinc boinc      8598 Nov 25 16:02 heartbeat.json
[2025-11-25 16:03:24] -rw------- 1 boinc boinc        95 Nov 25 16:03 pilot_heartbeat.json
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc        29 Nov 25 16:03 wrapper_checkpoint.txt
[2025-11-25 16:03:24] -rw------- 1 boinc boinc      4897 Nov 25 16:03 pilotlog.txt
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc      8192 Nov 25 16:03 boinc_mmap_file
[2025-11-25 16:03:24] -rw------- 1 boinc boinc   2810741 Nov 25 16:03 log.47533967._000770.job.log.1
[2025-11-25 16:03:24] -rw------- 1 boinc boinc       353 Nov 25 16:03 output.list
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc       620 Nov 25 16:03 runtime_log
[2025-11-25 16:03:24] -rw------- 1 boinc boinc   4925440 Nov 25 16:03 result.tar.gz
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc      8881 Nov 25 16:03 runtime_log.err
[2025-11-25 16:03:24] -rw------- 1 boinc boinc       671 Nov 25 16:03 gpzLDmpWVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgqIKDm4t9r5n.diag
[2025-11-25 16:03:24] -rw-r--r-- 1 boinc boinc     21321 Nov 25 16:03 stderr.txt
[2025-11-25 16:03:24] HITS file was successfully produced:
[2025-11-25 16:03:24] -rw------- 1 boinc boinc 924974971 Nov 25 16:01 shared/HITS.pool.root.1
[2025-11-25 16:03:24]  *** Contents of shared directory: ***
[2025-11-25 16:03:24] total 1309940
[2025-11-25 16:03:24] -rw-r--r-- 2 boinc boinc 410854098 Nov 25 10:25 ATLAS.root_0
[2025-11-25 16:03:24] -rw-r--r-- 2 boinc boinc     15847 Nov 25 10:25 start_atlas.sh
[2025-11-25 16:03:24] -rw-r--r-- 2 boinc boinc    590104 Nov 25 10:25 input.tar.gz
[2025-11-25 16:03:24] -rw------- 1 boinc boinc 924974971 Nov 25 16:01 HITS.pool.root.1
[2025-11-25 16:03:24] -rw------- 1 boinc boinc   4925440 Nov 25 16:03 result.tar.gz
16:03:25 (647611): run_atlas exited; CPU time 230526.311124
16:03:25 (647611): called boinc_finish(0)

</stderr_txt>
]]>

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