Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 07:05:07 (10180): vboxwrapper version 26210
2025-11-24 07:05:07 (10180): BOINC client version: 7.24.1
2025-11-24 07:05:07 (10180): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-11-24 07:05:08 (10180): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 07:05:08 (10180): Create VM. (boinc_f6f13d26a18cf984, slot#8)
2025-11-24 07:05:09 (10180): Setting Memory Size for VM. (4600MB)
2025-11-24 07:05:09 (10180): Setting CPU Count for VM. (6)
2025-11-24 07:05:09 (10180): Setting Chipset Options for VM.
2025-11-24 07:05:09 (10180): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 07:05:10 (10180): Setting Boot Options for VM.
2025-11-24 07:05:10 (10180): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 07:05:10 (10180): Enabling VM Network Access.
2025-11-24 07:05:11 (10180): Disabling USB Support for VM.
2025-11-24 07:05:11 (10180): Disabling COM Port Support for VM.
2025-11-24 07:05:11 (10180): Disabling LPT Port Support for VM.
2025-11-24 07:05:12 (10180): Disabling Audio Support for VM.
2025-11-24 07:05:12 (10180): Disabling Clipboard Support for VM.
2025-11-24 07:05:13 (10180): Disabling Drag and Drop Support for VM.
2025-11-24 07:05:13 (10180): Adding storage controller(s) to VM.
2025-11-24 07:05:14 (10180): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 07:05:15 (10180): Adding VirtualBox Guest Additions to VM.
2025-11-24 07:05:15 (10180): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 07:05:16 (10180): forwarding host port 24869 to guest port 80
2025-11-24 07:05:16 (10180): Enabling remote desktop for VM.
2025-11-24 07:05:17 (10180): Enabling shared directory for VM.
2025-11-24 07:05:19 (10180): Starting VM using VBoxManage interface. (boinc_f6f13d26a18cf984, slot#8)
2025-11-24 07:05:26 (10180): Successfully started VM. (PID = '29272')
2025-11-24 07:05:26 (10180): Reporting VM Process ID to BOINC.
2025-11-24 07:05:26 (10180): Guest Log: BIOS: VirtualBox 7.1.6
2025-11-24 07:05:26 (10180): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 07:05:26 (10180): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 07:05:26 (10180): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 07:05:26 (10180): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 07:05:26 (10180): Detected: Web Application Enabled (http://localhost:24869)
2025-11-24 07:05:26 (10180): Detected: Remote Desktop Enabled (localhost:24870)
2025-11-24 07:05:26 (10180): Preference change detected
2025-11-24 07:05:26 (10180): Setting CPU throttle for VM. (90%)
2025-11-24 07:05:26 (10180): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 07:05:28 (10180): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 07:05:28 (10180): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 07:05:30 (10180): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 07:05:30 (10180): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 07:05:30 (10180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 07:05:36 (10180): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 07:05:36 (10180): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 07:05:42 (10180): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000092 main     Log opened 2025-11-24T07:05:40.689001000Z
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000170 main     OS Product: Linux
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000198 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000222 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000245 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000246 main     Process ID: 1347
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.000246 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 07:05:42 (10180): Guest Log: 00:00:00.001038 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 07:05:42 (10180): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 07:05:42 (10180): Guest Log: [INFO] Mounting shared directory
2025-11-24 07:05:42 (10180): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 07:05:46 (10180): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 07:05:46 (10180): Guest Log: [INFO] Detected branch: prod
2025-11-24 07:05:46 (10180): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 07:05:46 (10180): Guest Log: Copying input files
2025-11-24 07:05:50 (10180): Guest Log: Copied input files into RunAtlas.
2025-11-24 07:05:50 (10180): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 07:05:50 (10180): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 07:05:50 (10180): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 07:05:50 (10180): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 07:05:52 (10180): Guest Log: 00:00:10.002485 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 677 555 000ns (GuestNow=1 763 985 952 368 457 000 ns GuestLast=1 763 967 940 690 902 000 ns fSetTimeLastLoop=true )
2025-11-24 07:05:58 (10180): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 07:05:58 (10180): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 07:05:58 (10180): Guest Log: 2.6.3.0 1625 0 30172 153244 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 07:06:00 (10180): Guest Log: copied the webapp to /var/www
2025-11-24 07:06:00 (10180): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-24 07:06:00 (10180): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-24 07:06:00 (10180): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 07:06:00 (10180): Guest Log:  *** Starting ATLAS job. (PandaID=6895363953 taskID=47556149) ***
2025-11-24 09:26:38 (10180): Status Report: Elapsed Time: '6000.000000'
2025-11-24 09:26:38 (10180): Status Report: CPU Time: '20665.843750'
2025-11-24 11:42:26 (10180): Status Report: Elapsed Time: '12000.000000'
2025-11-24 11:42:26 (10180): Status Report: CPU Time: '42027.984375'
2025-11-24 13:58:27 (10180): Status Report: Elapsed Time: '18000.000000'
2025-11-24 13:58:27 (10180): Status Report: CPU Time: '63395.828125'
2025-11-24 16:19:51 (10180): Status Report: Elapsed Time: '24000.000000'
2025-11-24 16:19:51 (10180): Status Report: CPU Time: '85943.234375'
2025-11-24 18:48:15 (10180): Status Report: Elapsed Time: '30000.000000'
2025-11-24 18:48:15 (10180): Status Report: CPU Time: '109980.328125'
2025-11-24 20:36:56 (10180): VM state change detected. (old = 'running', new = 'paused')
2025-11-24 22:44:59 (10180): VM state change detected. (old = 'paused', new = 'running')
2025-11-24 22:45:09 (10180): Guest Log: 13:31:23.272315 timesync vgsvcTimeSyncWorker: Radical host time change: 7 693 246 000 000ns (HostNow=1 764 042 308 874 000 000 ns HostLast=1 764 034 615 628 000 000 ns)
2025-11-24 22:45:19 (10180): Guest Log: 13:31:33.280669 timesync vgsvcTimeSyncWorker: Radical guest time change: 7 693 244 593 000ns (GuestNow=1 764 042 318 882 455 000 ns GuestLast=1 764 034 625 637 862 000 ns fSetTimeLastLoop=true )
2025-11-24 23:25:47 (10180): Status Report: Elapsed Time: '36000.000000'
2025-11-24 23:25:47 (10180): Status Report: CPU Time: '134160.062500'
2025-11-25 01:56:11 (10180): Status Report: Elapsed Time: '42000.000000'
2025-11-25 01:56:11 (10180): Status Report: CPU Time: '158656.125000'
2025-11-25 04:23:42 (10180): Status Report: Elapsed Time: '48000.000000'
2025-11-25 04:23:42 (10180): Status Report: CPU Time: '182775.953125'
2025-11-25 04:46:04 (10180): Guest Log:  *** Job finished ***
2025-11-25 04:46:04 (10180): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:45:49,316 | INFO     | [payload] validate_pre thread has finished
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:45:53,454 | INFO     | [data] queue_monitor thread has finished
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:45:55,295 | INFO     | [monitor] cgroup control has ended
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:45:56,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278022670144)>', '<ExcThread(monitor, started 140277440304896)>']
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:45:57,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:45:57,654 | INFO     | [monitor] control thread has ended
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:01,761 | INFO     | all workflow threads have been joined
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:01,762 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:01,762 | INFO     | traces error code: 0
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:01,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,341 [wrapper] ==== pilot stdout END ====
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,346 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,350 [wrapper] pilotpid: 6041
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,355 [wrapper] Pilot exit status: 0
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,371 [wrapper] pandaids: 6895363953
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,408 [wrapper] cleanup supervisor_pilot 22477 6042
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,412 [wrapper] Test setup, not cleaning
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,419 [wrapper] apfmon messages muted
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,423 [wrapper] ==== wrapper stdout END ====
2025-11-25 04:46:04 (10180): Guest Log: 2025-11-25 09:46:02,427 [wrapper] ==== wrapper stderr END ====
2025-11-25 04:46:04 (10180): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 04:46:04 (10180): Guest Log:     "exeErrorCode": 0,
2025-11-25 04:46:04 (10180): Guest Log:     "exeErrorDiag": "",
2025-11-25 04:46:04 (10180): Guest Log:     "pilotErrorCode": 0,
2025-11-25 04:46:04 (10180): Guest Log:     "pilotErrorDiag": "",
2025-11-25 04:46:04 (10180): Guest Log:  *** Listing of results directory ***
2025-11-25 04:46:04 (10180): Guest Log: total 908544
2025-11-25 04:46:04 (10180): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 15:18 pilot3.tar.gz
2025-11-25 04:46:04 (10180): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 15:41 queuedata.json
2025-11-25 04:46:04 (10180): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 15:41 runpilot2-wrapper.sh
2025-11-25 04:46:04 (10180): Guest Log: -rwxr-xr-x. 1 atlas atlas      9208 Nov 24 12:05 init_data.xml
2025-11-25 04:46:04 (10180): Guest Log: -rwxr-xr-x. 1 atlas atlas    590102 Nov 24 12:05 input.tar.gz
2025-11-25 04:46:04 (10180): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 12:05 start_atlas.sh
2025-11-25 04:46:04 (10180): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 12:05 EVNT.47483658._001173.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 04:46:04 (10180): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 24 12:05 pandaJob.out
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas    989803 Nov 24 12:06 agis_schedconf.cvmfs.json
2025-11-25 04:46:04 (10180): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 12:07 pilot3
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas 906334066 Nov 25 09:44 HITS.47556149._001600.pool.root.1
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas      1046 Nov 25 09:45 memory_monitor_summary.json
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas        97 Nov 25 09:45 pilot_heartbeat.json
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 25 09:45 agis_ddmendpoints.agis.ALL.json
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas   1969764 Nov 25 09:45 log.47556149._001600.job.log.tgz.1
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas      8651 Nov 25 09:45 heartbeat.json
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 25 09:46 pilotlog.txt
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas   8114195 Nov 25 09:46 log.47556149._001600.job.log.1
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 09:46 output.list
2025-11-25 04:46:04 (10180): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 09:46 runtime_log
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas  10106880 Nov 25 09:46 result.tar.gz
2025-11-25 04:46:04 (10180): Guest Log: -rw-r--r--. 1 atlas atlas      8749 Nov 25 09:46 runtime_log.err
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas       666 Nov 25 09:46 H2mKDmjORh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmicIKDmwSnH8m.diag
2025-11-25 04:46:04 (10180): Guest Log: Looking for outputfile HITS.47556149._001600.pool.root.1
2025-11-25 04:46:04 (10180): Guest Log: HITS file was successfully produced
2025-11-25 04:46:04 (10180): Guest Log: -rw-------. 1 atlas atlas 906334066 Nov 25 09:44 /home/atlas/RunAtlas/HITS.47556149._001600.pool.root.1
2025-11-25 04:46:12 (10180): Guest Log: Successfully finished the ATLAS job!
2025-11-25 04:46:12 (10180): Guest Log: Copying the results back to the shared directory!
2025-11-25 04:46:12 (10180): Guest Log:  *** Contents of shared directory: ***
2025-11-25 04:46:12 (10180): Guest Log: total 1296408
2025-11-25 04:46:12 (10180): Guest Log: -rwxrwxrwx. 1 root root 410455712 Nov 24 12:05 ATLAS.root_0
2025-11-25 04:46:12 (10180): Guest Log: -rwxrwxrwx. 1 root root 906334066 Nov 25 09:46 HITS.pool.root.1
2025-11-25 04:46:12 (10180): Guest Log: -rwxrwxrwx. 1 root root      9208 Nov 24 12:05 init_data.xml
2025-11-25 04:46:12 (10180): Guest Log: -rwxrwxrwx. 1 root root    590102 Nov 24 12:04 input.tar.gz
2025-11-25 04:46:12 (10180): Guest Log: -rwxrwxrwx. 1 root root  10106880 Nov 25  2025 result.tar.gz
2025-11-25 04:46:12 (10180): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 12:04 start_atlas.sh
2025-11-25 04:46:12 (10180): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 04:46:12 (10180): VM Completion File Detected.
2025-11-25 04:46:12 (10180): Powering off VM.
2025-11-25 04:46:14 (10180): Successfully stopped VM.
2025-11-25 04:46:14 (10180): Deregistering VM. (boinc_f6f13d26a18cf984, slot#8)
2025-11-25 04:46:14 (10180): Removing network bandwidth throttle group from VM.
2025-11-25 04:46:15 (10180): Removing VM from VirtualBox.
2025-11-25 04:46:20 (10180): called boinc_finish(0)

</stderr_txt>
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