Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:56:01 (32170): wrapper (7.7.26015): starting
11:56:01 (32170): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:56:01] Arguments: --nthreads 8
[2025-11-26 11:56:01] Threads: 8
[2025-11-26 11:56:01] Checking for CVMFS
[2025-11-26 11:56:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:56:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:56:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:56:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:56:03] 2.11.2.0 5153 172083 139828 153318 3 130 18084108 25165824 1288 130560 10 55863014 99.869 33031534 1995 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 11:56:03] CVMFS is ok
[2025-11-26 11:56:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:56:03] Checking for apptainer binary...
[2025-11-26 11:56:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:56:03] Running /usr/bin/apptainer --version
[2025-11-26 11:56:03] apptainer version 1.3.2-1.el7
[2025-11-26 11:56:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:56:25] cg-vwn274.simple-grid.lan
[2025-11-26 11:56:25] apptainer works
[2025-11-26 11:56:25] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:56:25] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:56:25] Starting ATLAS job with PandaID=6894052142
[2025-11-26 11:56:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:17:16]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:17:16] 2025-11-26 20:16:23,781 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 21:17:16] 2025-11-26 20:16:23,782 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6894052142/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,783 | INFO     | extracted standard info from prmon json
[2025-11-26 21:17:16] 2025-11-26 20:16:23,783 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:17:16] 2025-11-26 20:16:23,783 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:17:16] 2025-11-26 20:16:23,784 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 21:17:16] 2025-11-26 20:16:23,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 21:17:16] 2025-11-26 20:16:23,793 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:17:16] 2025-11-26 20:16:23,794 | INFO     | sum of square deviations: 48286280234.5
[2025-11-26 21:17:16] 2025-11-26 20:16:23,802 | INFO     | sum of deviations: 281674342797.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,803 | INFO     | mean x: 1764171671.5
[2025-11-26 21:17:16] 2025-11-26 20:16:23,803 | INFO     | mean y: 2532058.959107807
[2025-11-26 21:17:16] 2025-11-26 20:16:23,803 | INFO     | intersect: -10288629193.00667
[2025-11-26 21:17:16] 2025-11-26 20:16:23,804 | INFO     | chi2: 5.802017534405781
[2025-11-26 21:17:16] 2025-11-26 20:16:23,804 | INFO     | sum of square deviations: 46952478482.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,812 | INFO     | sum of deviations: 315361087168.00006
[2025-11-26 21:17:16] 2025-11-26 20:16:23,813 | INFO     | mean x: 1764171519.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,813 | INFO     | mean y: 2535878.984990619
[2025-11-26 21:17:16] 2025-11-26 20:16:23,813 | INFO     | intersect: -11846701183.036098
[2025-11-26 21:17:16] 2025-11-26 20:16:23,813 | INFO     | chi2: 5.048632407676032
[2025-11-26 21:17:16] 2025-11-26 20:16:23,814 | INFO     | current chi2=5.048632407676032 (change=12.984881935674943 %)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,814 | INFO     | right removable region: 532
[2025-11-26 21:17:16] 2025-11-26 20:16:23,815 | INFO     | sum of square deviations: 46952478482.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,822 | INFO     | sum of deviations: 96901556100.00002
[2025-11-26 21:17:16] 2025-11-26 20:16:23,822 | INFO     | mean x: 1764171824.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,823 | INFO     | mean y: 2553170.5009380863
[2025-11-26 21:17:16] 2025-11-26 20:16:23,823 | INFO     | intersect: -3638383378.5443316
[2025-11-26 21:17:16] 2025-11-26 20:16:23,823 | INFO     | chi2: 1.628430897569472
[2025-11-26 21:17:16] 2025-11-26 20:16:23,824 | INFO     | current chi2=1.628430897569472 (change=71.93336821350628 %)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,824 | INFO     | sum of square deviations: 45643467892.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,832 | INFO     | sum of deviations: 23787731654.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,832 | INFO     | mean x: 1764171976.5
[2025-11-26 21:17:16] 2025-11-26 20:16:23,832 | INFO     | mean y: 2561667.3106060605
[2025-11-26 21:17:16] 2025-11-26 20:16:23,833 | INFO     | intersect: -916861231.6633822
[2025-11-26 21:17:16] 2025-11-26 20:16:23,833 | INFO     | chi2: 0.8775767956458473
[2025-11-26 21:17:16] 2025-11-26 20:16:23,833 | INFO     | current chi2=0.8775767956458473 (change=46.10905522882906 %)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,834 | INFO     | sum of square deviations: 44359015902.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,842 | INFO     | sum of deviations: -1373155628.0000076
[2025-11-26 21:17:16] 2025-11-26 20:16:23,842 | INFO     | mean x: 1764172129.0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,842 | INFO     | mean y: 2564650.2351816446
[2025-11-26 21:17:16] 2025-11-26 20:16:23,842 | INFO     | intersect: 57175484.99871579
[2025-11-26 21:17:16] 2025-11-26 20:16:23,843 | INFO     | chi2: 0.7963093276156292
[2025-11-26 21:17:16] 2025-11-26 20:16:23,843 | INFO     | current chi2=0.7963093276156292 (change=9.260439477596922 %)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,843 | INFO     | left removable region: 30
[2025-11-26 21:17:16] 2025-11-26 20:16:23,844 | INFO     | sum of square deviations: 39227248985.5
[2025-11-26 21:17:16] 2025-11-26 20:16:23,851 | INFO     | sum of deviations: 26827070287.499992
[2025-11-26 21:17:16] 2025-11-26 20:16:23,851 | INFO     | mean x: 1764172403.5
[2025-11-26 21:17:16] 2025-11-26 20:16:23,851 | INFO     | mean y: 2569751.611553785
[2025-11-26 21:17:16] 2025-11-26 20:16:23,851 | INFO     | intersect: -1203927728.8887107
[2025-11-26 21:17:16] 2025-11-26 20:16:23,852 | INFO     | chi2: 0.015748163453060595
[2025-11-26 21:17:16] 2025-11-26 20:16:23,852 | INFO     | current memory leak: 0.68 B/s (using 502 data points, chi2=0.02)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,853 | INFO     | could have reported an average CPU frequency of 1999 MHz (20 samples)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,853 | INFO     | ..............................
[2025-11-26 21:17:16] 2025-11-26 20:16:23,853 | INFO     | . Timing measurements:
[2025-11-26 21:17:16] 2025-11-26 20:16:23,853 | INFO     | . get job = 0 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,853 | INFO     | . initial setup = 3 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,853 | INFO     | . payload setup = 134 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,854 | INFO     | . stage-in = 0 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,854 | INFO     | . payload execution = 32944 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,854 | INFO     | . stage-out = 3 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,854 | INFO     | . log creation = 1 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,854 | INFO     | ..............................
[2025-11-26 21:17:16] 2025-11-26 20:16:23,959 | INFO     | 
[2025-11-26 21:17:16] 2025-11-26 20:16:23,959 | INFO     | job summary report
[2025-11-26 21:17:16] 2025-11-26 20:16:23,959 | INFO     | --------------------------------------------------
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | PanDA job id: 6894052142
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | task id: 47523659
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | errors: (none)
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | pilot state: finished 
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | transexitcode: 0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | exeerrorcode: 0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | exeerrordiag: 
[2025-11-26 21:17:16] 2025-11-26 20:16:23,960 | INFO     | exitcode: 0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | exitmsg: OK
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | cpuconsumptiontime: 129288 s
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | nevents: 400
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | neventsw: 0
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | pid: 10190
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | pgrp: 10190
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | corecount: 8
[2025-11-26 21:17:16] 2025-11-26 20:16:23,961 | INFO     | event service: False
[2025-11-26 21:17:16] 2025-11-26 20:16:23,962 | INFO     | sizes: {0: 2283732, 1: 2283931, 12: 2283931, 23: 2283959, 34: 2283987, 44: 2284015, 55: 2284171, 66: 2284199, 77: 2284227, 87: 2284283, 93: 2284573, 98: 2284881, 3
[2025-11-26 21:17:16] 2025-11-26 20:16:23,962 | INFO     | --------------------------------------------------
[2025-11-26 21:17:16] 2025-11-26 20:16:23,962 | INFO     | 
[2025-11-26 21:17:16] 2025-11-26 20:16:23,962 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 21:17:16] 2025-11-26 20:16:24,078 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,079 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,080 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:17:16] 2025-11-26 20:16:24,081 | INFO     | job 6894052142 has completed (purged errors)
[2025-11-26 21:17:16] 2025-11-26 20:16:24,081 | INFO     | overall cleanup function is called
[2025-11-26 21:17:16] 2025-11-26 20:16:25,090 | INFO     | --- collectZombieJob: --- 10, [10190]
[2025-11-26 21:17:16] 2025-11-26 20:16:25,090 | INFO     | zombie collector waiting for pid 10190
[2025-11-26 21:17:16] 2025-11-26 20:16:25,090 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:17:16] 2025-11-26 20:16:25,090 | INFO     | collected zombie processes
[2025-11-26 21:17:16] 2025-11-26 20:16:25,091 | INFO     | will attempt to kill all subprocesses of pid=10190
[2025-11-26 21:17:16] 2025-11-26 20:16:25,222 | INFO     | process IDs to be killed: [10190] (in reverse order)
[2025-11-26 21:17:16] 2025-11-26 20:16:25,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:17:16] 2025-11-26 20:16:25,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:17:16] 2025-11-26 20:16:25,945 | INFO     | did not find any defunct processes belonging to 10190
[2025-11-26 21:17:16] 2025-11-26 20:16:25,948 | INFO     | did not find any defunct processes belonging to 10190
[2025-11-26 21:17:16] 2025-11-26 20:16:25,978 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:17:16] 2025-11-26 20:16:25,978 | INFO     | ready for new job
[2025-11-26 21:17:16] 2025-11-26 20:16:25,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:17:16] 2025-11-26 20:16:25,981 | INFO     | ***************************************
[2025-11-26 21:17:16] 2025-11-26 20:16:25,982 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:17:16] 2025-11-26 20:16:25,982 | INFO     | ***************************************
[2025-11-26 21:17:16] 2025-11-26 20:16:25,982 | INFO     | 
[2025-11-26 21:17:16] 2025-11-26 20:16:25,982 | INFO     | pilot is running in a VM
[2025-11-26 21:17:16] 2025-11-26 20:16:25,983 | INFO     | architecture information:
[2025-11-26 21:17:16] 2025-11-26 20:16:25,989 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:17:16] 2025-11-26 20:16:26,206 | INFO     | cat /etc/os-release:
[2025-11-26 21:17:16] NAME="CentOS Linux"
[2025-11-26 21:17:16] VERSION="7 (Core)"
[2025-11-26 21:17:16] ID="centos"
[2025-11-26 21:17:16] ID_LIKE="rhel fedora"
[2025-11-26 21:17:16] VERSION_ID="7"
[2025-11-26 21:17:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:17:16] ANSI_COLOR="0;31"
[2025-11-26 21:17:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:17:16] HOME_URL="https://www.centos.org/"
[2025-11-26 21:17:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:17:16] 
[2025-11-26 21:17:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:17:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:17:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:17:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:17:16] 
[2025-11-26 21:17:16] 2025-11-26 20:16:26,206 | INFO     | ***************************************
[2025-11-26 21:17:16] 2025-11-26 20:16:26,709 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 21:17:16] 2025-11-26 20:16:26,845 | INFO     | sufficient remaining disk space (496647536640 B)
[2025-11-26 21:17:16] 2025-11-26 20:16:26,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:17:16] 2025-11-26 20:16:26,845 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:17:16] 2025-11-26 20:16:26,845 | INFO     | update_server=False
[2025-11-26 21:17:16] 2025-11-26 20:16:26,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:17:16] 2025-11-26 20:16:26,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:16] 2025-11-26 20:16:26,846 | INFO     | aborting loop
[2025-11-26 21:17:16] 2025-11-26 20:16:27,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:17:16] 2025-11-26 20:16:27,077 | INFO     | all payload control threads have been joined
[2025-11-26 21:17:16] 2025-11-26 20:16:27,433 | INFO     | all job control threads have been joined
[2025-11-26 21:17:16] 2025-11-26 20:16:27,830 | INFO     | all data control threads have been joined
[2025-11-26 21:17:16] 2025-11-26 20:16:27,850 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:27,852 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,067 | INFO     | [job] validate thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,083 | INFO     | [payload] control thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,086 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,411 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,429 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,439 | INFO     | [job] control thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,836 | INFO     | [data] control thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,908 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:28,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:16] 2025-11-26 20:16:29,004 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:29,030 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:29,364 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:29,979 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:29,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:17:16] 2025-11-26 20:16:33,991 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:37,524 | INFO     | job.realtimelogging is not enabled
[2025-11-26 21:17:16] 2025-11-26 20:16:38,530 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:17:16] 2025-11-26 20:16:56,806 | INFO     | PID=3562 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 21:17:16] 2025-11-26 20:16:56,807 | INFO     | .. there are 9 such processes running
[2025-11-26 21:17:16] 2025-11-26 20:16:56,807 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:17:16] 2025-11-26 20:16:56,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:17:16] 2025-11-26 20:16:56,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:17:16] 2025-11-26 20:17:06,802 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:17:16] 2025-11-26 20:17:07,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218530760512)>', '<ExcThread(monitor, started 140218225108736)>']
[2025-11-26 21:17:16] 2025-11-26 20:17:07,871 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:17:16] 2025-11-26 20:17:07,871 | INFO     | [monitor] control thread has ended
[2025-11-26 21:17:16] 2025-11-26 20:17:12,057 | INFO     | all workflow threads have been joined
[2025-11-26 21:17:16] 2025-11-26 20:17:12,057 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:17:16] 2025-11-26 20:17:12,058 | INFO     | traces error code: 0
[2025-11-26 21:17:16] 2025-11-26 20:17:12,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:17:16] 2025-11-26 20:17:12,281 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:17:16] 2025-11-26 20:17:12,312 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:17:16] 2025-11-26 20:17:12,351 [wrapper] pilotpid: 3562
[2025-11-26 21:17:16] 2025-11-26 20:17:12,391 [wrapper] Pilot exit status: 0
[2025-11-26 21:17:16] 2025-11-26 20:17:12,845 [wrapper] pandaids: 6894052142
[2025-11-26 21:17:16] 2025-11-26 20:17:13,585 [wrapper] cleanup supervisor_pilot 31610 3563
[2025-11-26 21:17:16] 2025-11-26 20:17:13,662 [wrapper] Test setup, not cleaning
[2025-11-26 21:17:16] 2025-11-26 20:17:13,757 [wrapper] apfmon messages muted
[2025-11-26 21:17:16] 2025-11-26 20:17:13,885 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:17:16] 2025-11-26 20:17:14,016 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:17:16]  *** Error codes and diagnostics ***
[2025-11-26 21:17:16]     "exeErrorCode": 0,
[2025-11-26 21:17:16]     "exeErrorDiag": "",
[2025-11-26 21:17:16]     "pilotErrorCode": 0,
[2025-11-26 21:17:16]     "pilotErrorDiag": "",
[2025-11-26 21:17:16]  *** Listing of results directory ***
[2025-11-26 21:17:16] total 628184
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc    576529 Nov 22 18:17 pilot3.tar.gz
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc      5112 Nov 22 18:27 queuedata.json
[2025-11-26 21:17:16] -rwx------. 1 boinc boinc     36292 Nov 22 18:27 runpilot2-wrapper.sh
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc       100 Nov 26 11:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:17:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 11:56 run_atlas
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc       105 Nov 26 11:56 job.xml
[2025-11-26 21:17:16] -rw-r--r--. 2 boinc boinc 302121022 Nov 26 11:56 EVNT.47523657._000005.pool.root.1
[2025-11-26 21:17:16] -rw-r--r--. 2 boinc boinc    589950 Nov 26 11:56 input.tar.gz
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc      6391 Nov 26 11:56 init_data.xml
[2025-11-26 21:17:16] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:56 start_atlas.sh
[2025-11-26 21:17:16] drwxrwx--x. 2 boinc boinc        68 Nov 26 11:56 shared
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc         0 Nov 26 11:56 boinc_lockfile
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc      2614 Nov 26 11:56 pandaJob.out
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc    991827 Nov 26 12:00 agis_schedconf.cvmfs.json
[2025-11-26 21:17:16] drwx------. 5 boinc boinc      4096 Nov 26 12:00 pilot3
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc 327000715 Nov 26 21:13 HITS.47523659._000116.pool.root.1
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc       532 Nov 26 21:13 boinc_task_state.xml
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc      1015 Nov 26 21:14 memory_monitor_summary.json
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc   1516240 Nov 26 21:14 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc    710153 Nov 26 21:14 log.47523659._000116.job.log.tgz.1
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc        95 Nov 26 21:15 pilot_heartbeat.json
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc      7773 Nov 26 21:16 heartbeat.json
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc      4955 Nov 26 21:17 pilotlog.txt
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc      8192 Nov 26 21:17 boinc_mmap_file
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc        29 Nov 26 21:17 wrapper_checkpoint.txt
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc   4407290 Nov 26 21:17 log.47523659._000116.job.log.1
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc       357 Nov 26 21:17 output.list
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc       620 Nov 26 21:17 runtime_log
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc   5140480 Nov 26 21:17 result.tar.gz
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc       659 Nov 26 21:17 w51KDm0Z6g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9CIKDmysogyn.diag
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc      8817 Nov 26 21:17 runtime_log.err
[2025-11-26 21:17:16] -rw-r--r--. 1 boinc boinc     20884 Nov 26 21:17 stderr.txt
[2025-11-26 21:17:16] HITS file was successfully produced:
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc 327000715 Nov 26 21:13 shared/HITS.pool.root.1
[2025-11-26 21:17:16]  *** Contents of shared directory: ***
[2025-11-26 21:17:16] total 620000
[2025-11-26 21:17:16] -rw-r--r--. 2 boinc boinc 302121022 Nov 26 11:56 ATLAS.root_0
[2025-11-26 21:17:16] -rw-r--r--. 2 boinc boinc    589950 Nov 26 11:56 input.tar.gz
[2025-11-26 21:17:16] -rw-r--r--. 2 boinc boinc     15847 Nov 26 11:56 start_atlas.sh
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc 327000715 Nov 26 21:13 HITS.pool.root.1
[2025-11-26 21:17:16] -rw-------. 1 boinc boinc   5140480 Nov 26 21:17 result.tar.gz
21:17:17 (32170): run_atlas exited; CPU time 129735.530844
21:17:17 (32170): called boinc_finish(0)

</stderr_txt>
]]>

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