Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:05:47 (3388397): wrapper (7.7.26015): starting
07:05:47 (3388397): wrapper: running run_atlas (--nthreads 2)
[2025-11-27 07:05:47] Arguments: --nthreads 2
[2025-11-27 07:05:47] Threads: 2
[2025-11-27 07:05:47] Checking for CVMFS
[2025-11-27 07:05:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:05:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:05:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:05:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:05:48] 2.9.2.0 1943952 12375 61064 153349 3 81 32494327 36864000 0 130560 0 3995033 99.930 609146 5134 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 07:05:48] CVMFS is ok
[2025-11-27 07:05:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:05:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:05:48] Further information can be found at the LHC@home message board.
[2025-11-27 07:05:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:05:48] Checking for apptainer binary...
[2025-11-27 07:05:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:05:48] Running /usr/bin/apptainer --version
[2025-11-27 07:05:48] apptainer version 1.4.1-1.1
[2025-11-27 07:05:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:05:48] madmaxA277a
[2025-11-27 07:05:48] apptainer works
[2025-11-27 07:05:48] Set ATHENA_PROC_NUMBER=2
[2025-11-27 07:05:48] Set ATHENA_CORE_NUMBER=2
[2025-11-27 07:05:48] Starting ATLAS job with PandaID=6895362785
[2025-11-27 07:05:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:11:06]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:11:06] 2025-11-27 18:10:02,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:11:06] 2025-11-27 18:10:02,234 | INFO     | collected zombie processes
[2025-11-27 19:11:06] 2025-11-27 18:10:02,234 | INFO     | will attempt to kill all subprocesses of pid=3398528
[2025-11-27 19:11:06] 2025-11-27 18:10:02,267 | INFO     | process IDs to be killed: [3398528] (in reverse order)
[2025-11-27 19:11:06] 2025-11-27 18:10:02,287 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:11:06] 2025-11-27 18:10:02,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:11:06] 2025-11-27 18:10:02,288 | INFO     | did not find any defunct processes belonging to 3398528
[2025-11-27 19:11:06] 2025-11-27 18:10:02,289 | INFO     | did not find any defunct processes belonging to 3398528
[2025-11-27 19:11:06] 2025-11-27 18:10:02,289 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:11:06] 2025-11-27 18:10:02,289 | INFO     | ready for new job
[2025-11-27 19:11:06] 2025-11-27 18:10:02,289 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:11:06] 2025-11-27 18:10:02,290 | INFO     | ***************************************
[2025-11-27 19:11:06] 2025-11-27 18:10:02,291 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:11:06] 2025-11-27 18:10:02,291 | INFO     | ***************************************
[2025-11-27 19:11:06] 2025-11-27 18:10:02,291 | INFO     | 
[2025-11-27 19:11:06] 2025-11-27 18:10:02,291 | INFO     | architecture information:
[2025-11-27 19:11:06] 2025-11-27 18:10:02,291 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:11:06] 2025-11-27 18:10:02,299 | INFO     | cat /etc/os-release:
[2025-11-27 19:11:06] NAME="CentOS Linux"
[2025-11-27 19:11:06] VERSION="7 (Core)"
[2025-11-27 19:11:06] ID="centos"
[2025-11-27 19:11:06] ID_LIKE="rhel fedora"
[2025-11-27 19:11:06] VERSION_ID="7"
[2025-11-27 19:11:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:11:06] ANSI_COLOR="0;31"
[2025-11-27 19:11:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:11:06] HOME_URL="https://www.centos.org/"
[2025-11-27 19:11:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:11:06] 
[2025-11-27 19:11:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:11:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:11:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:11:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:11:06] 
[2025-11-27 19:11:06] 2025-11-27 18:10:02,299 | INFO     | ***************************************
[2025-11-27 19:11:06] 2025-11-27 18:10:02,803 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | INFO     | sufficient remaining disk space (483281338368 B)
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | INFO     | update_server=False
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-27 18:10:02,814 | INFO     | aborting loop
[2025-11-27 19:11:06] 2025-11-27 18:10:03,448 | INFO     | all payload control threads have been joined
[2025-11-27 19:11:06] 2025-11-27 18:10:03,450 | INFO     | all job control threads have been joined
[2025-11-27 19:11:06] 2025-11-27 18:10:03,643 | INFO     | all data control threads have been joined
[2025-11-27 19:11:06] 2025-11-27 18:10:03,819 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:03,820 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:03,820 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:03,933 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,111 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-27 18:10:04,334 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,390 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,454 | INFO     | [payload] control thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,456 | INFO     | [job] control thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,509 | INFO     | [job] validate thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,648 | INFO     | [data] control thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,810 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:04,860 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:06,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:11:06] 2025-11-27 18:10:06,119 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:10,116 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:13,507 | INFO     | job.realtimelogging is not enabled
[2025-11-27 19:11:06] 2025-11-27 18:10:14,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:11:06] 2025-11-27 18:10:33,156 | INFO     | PID=3392106 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:11:06] 2025-11-27 18:10:33,156 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:11:06] 2025-11-27 18:10:33,156 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:11:06] 2025-11-27 18:10:33,156 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:11:06] 2025-11-27 18:11:00,345 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:11:06] 2025-11-27 18:11:01,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484533368640)>', '<ExcThread(monitor, started 140483816847104)>']
[2025-11-27 19:11:06] 2025-11-27 18:11:02,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:11:06] 2025-11-27 18:11:02,308 | INFO     | [monitor] control thread has ended
[2025-11-27 19:11:06] 2025-11-27 18:11:06,445 | INFO     | all workflow threads have been joined
[2025-11-27 19:11:06] 2025-11-27 18:11:06,445 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:11:06] 2025-11-27 18:11:06,445 | INFO     | traces error code: 0
[2025-11-27 19:11:06] 2025-11-27 18:11:06,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:11:06] 2025-11-27 18:11:06,489 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:11:06] 2025-11-27 18:11:06,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:11:06] 2025-11-27 18:11:06,493 [wrapper] pilotpid: 3392106
[2025-11-27 19:11:06] 2025-11-27 18:11:06,495 [wrapper] Pilot exit status: 0
[2025-11-27 19:11:06] 2025-11-27 18:11:06,501 [wrapper] pandaids: 6895362785
[2025-11-27 19:11:06] 2025-11-27 18:11:06,513 [wrapper] cleanup supervisor_pilot 3469253 3392107
[2025-11-27 19:11:06] 2025-11-27 18:11:06,515 [wrapper] Test setup, not cleaning
[2025-11-27 19:11:06] 2025-11-27 18:11:06,517 [wrapper] apfmon messages muted
[2025-11-27 19:11:06] 2025-11-27 18:11:06,519 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:11:06] 2025-11-27 18:11:06,520 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:11:06]  *** Error codes and diagnostics ***
[2025-11-27 19:11:06]     "exeErrorCode": 0,
[2025-11-27 19:11:06]     "exeErrorDiag": "",
[2025-11-27 19:11:06]     "pilotErrorCode": 0,
[2025-11-27 19:11:06]     "pilotErrorDiag": "",
[2025-11-27 19:11:06]  *** Listing of results directory ***
[2025-11-27 19:11:06] total 1319700
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc    576529 Nov 23 16:18 pilot3.tar.gz
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc      5112 Nov 23 16:34 queuedata.json
[2025-11-27 19:11:06] -rwx------ 1 boinc boinc     36292 Nov 23 16:34 runpilot2-wrapper.sh
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:11:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:05 run_atlas
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:05 job.xml
[2025-11-27 19:11:06] -rw-r--r-- 2 boinc boinc 412251325 Nov 27 07:05 EVNT.47483658._000795.pool.root.1
[2025-11-27 19:11:06] -rw-r--r-- 2 boinc boinc    590106 Nov 27 07:05 input.tar.gz
[2025-11-27 19:11:06] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:05 start_atlas.sh
[2025-11-27 19:11:06] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:05 shared
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:05 boinc_setup_complete
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc      6211 Nov 27 07:05 init_data.xml
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:05 boinc_lockfile
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc      2786 Nov 27 07:05 pandaJob.out
[2025-11-27 19:11:06] -rw------- 1 boinc boinc    991578 Nov 27 07:05 agis_schedconf.cvmfs.json
[2025-11-27 19:11:06] drwx------ 5 boinc boinc      4096 Nov 27 07:06 pilot3
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc       531 Nov 27 19:06 boinc_task_state.xml
[2025-11-27 19:11:06] -rw------- 1 boinc boinc 920605279 Nov 27 19:09 HITS.47556137._007818.pool.root.1
[2025-11-27 19:11:06] -rw------- 1 boinc boinc      1025 Nov 27 19:09 memory_monitor_summary.json
[2025-11-27 19:11:06] -rw------- 1 boinc boinc   1516240 Nov 27 19:09 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:11:06] -rw------- 1 boinc boinc   1207441 Nov 27 19:09 log.47556137._007818.job.log.tgz.1
[2025-11-27 19:11:06] -rw------- 1 boinc boinc      8568 Nov 27 19:10 heartbeat.json
[2025-11-27 19:11:06] -rw------- 1 boinc boinc        95 Nov 27 19:10 pilot_heartbeat.json
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc      8192 Nov 27 19:11 boinc_mmap_file
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc        28 Nov 27 19:11 wrapper_checkpoint.txt
[2025-11-27 19:11:06] -rw------- 1 boinc boinc      4824 Nov 27 19:11 pilotlog.txt
[2025-11-27 19:11:06] -rw------- 1 boinc boinc   6095147 Nov 27 19:11 log.47556137._007818.job.log.1
[2025-11-27 19:11:06] -rw------- 1 boinc boinc       353 Nov 27 19:11 output.list
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc       620 Nov 27 19:11 runtime_log
[2025-11-27 19:11:06] -rw------- 1 boinc boinc   7321600 Nov 27 19:11 result.tar.gz
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc      8923 Nov 27 19:11 runtime_log.err
[2025-11-27 19:11:06] -rw------- 1 boinc boinc       670 Nov 27 19:11 NQALDmoHRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp0KKDm7ZAj9n.diag
[2025-11-27 19:11:06] -rw-r--r-- 1 boinc boinc     10738 Nov 27 19:11 stderr.txt
[2025-11-27 19:11:06] HITS file was successfully produced:
[2025-11-27 19:11:06] -rw------- 1 boinc boinc 920605279 Nov 27 19:09 shared/HITS.pool.root.1
[2025-11-27 19:11:06]  *** Contents of shared directory: ***
[2025-11-27 19:11:06] total 1309380
[2025-11-27 19:11:06] -rw-r--r-- 2 boinc boinc 412251325 Nov 27 07:05 ATLAS.root_0
[2025-11-27 19:11:06] -rw-r--r-- 2 boinc boinc    590106 Nov 27 07:05 input.tar.gz
[2025-11-27 19:11:06] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:05 start_atlas.sh
[2025-11-27 19:11:06] -rw------- 1 boinc boinc 920605279 Nov 27 19:09 HITS.pool.root.1
[2025-11-27 19:11:06] -rw------- 1 boinc boinc   7321600 Nov 27 19:11 result.tar.gz
19:11:07 (3388397): run_atlas exited; CPU time 86102.223559
19:11:07 (3388397): called boinc_finish(0)

</stderr_txt>
]]>

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