Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:13:05 (2116726): wrapper (7.7.26015): starting
12:13:05 (2116726): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 12:13:05] Arguments: --nthreads 8
[2025-11-24 12:13:05] Threads: 8
[2025-11-24 12:13:05] Checking for CVMFS
[2025-11-24 12:13:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:13:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:13:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:13:06] 2.13.2.0 6902 32516 261908 153253 3 339 38566444 40960000 24698 16776704 0 108498088 99.600 112168790 39558 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 12:13:06] CVMFS is ok
[2025-11-24 12:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:13:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:13:06] Further information can be found at the LHC@home message board.
[2025-11-24 12:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:13:06] Checking for apptainer binary...
[2025-11-24 12:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:13:06] Running /usr/bin/apptainer --version
[2025-11-24 12:13:06] apptainer version 1.4.4-1.el9
[2025-11-24 12:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:13:06] c-212-6.aglt2.org
[2025-11-24 12:13:06] apptainer works
[2025-11-24 12:13:06] Set ATHENA_PROC_NUMBER=8
[2025-11-24 12:13:06] Set ATHENA_CORE_NUMBER=8
[2025-11-24 12:13:06] Starting ATLAS job with PandaID=6895363899
[2025-11-24 12:13:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:40:58]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:40:58] 2025-11-25 15:39:54,162 | INFO     | monitor loop #4846: job 0:6895363899 is in state 'finished'
[2025-11-25 10:40:58] 2025-11-25 15:39:54,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:40:58] 2025-11-25 15:39:55,684 | INFO     | time since job start (80786s) is within the limit (172800.0s)
[2025-11-25 10:40:58] 2025-11-25 15:39:56,667 | INFO     | monitor loop #4847: job 0:6895363899 is in state 'finished'
[2025-11-25 10:40:58] 2025-11-25 15:39:56,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:40:58] 2025-11-25 15:39:57,694 | INFO     | time since job start (80788s) is within the limit (172800.0s)
[2025-11-25 10:40:58] 2025-11-25 15:39:59,172 | INFO     | monitor loop #4848: job 0:6895363899 is in state 'finished'
[2025-11-25 10:40:58] 2025-11-25 15:39:59,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:40:58] 2025-11-25 15:39:59,703 | INFO     | time since job start (80790s) is within the limit (172800.0s)
[2025-11-25 10:40:58] 2025-11-25 15:40:01,677 | INFO     | monitor loop #4849: job 0:6895363899 is in state 'finished'
[2025-11-25 10:40:58] 2025-11-25 15:40:01,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:40:58] 2025-11-25 15:40:01,713 | INFO     | time since job start (80792s) is within the limit (172800.0s)
[2025-11-25 10:40:58] 2025-11-25 15:40:03,720 | INFO     | time since job start (80794s) is within the limit (172800.0s)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,182 | INFO     | monitor loop #4850: job 0:6895363899 is in state 'finished'
[2025-11-25 10:40:58] 2025-11-25 15:40:04,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,543 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 10:40:58] 2025-11-25 15:40:04,548 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3023.1421041666677
[2025-11-25 10:40:58] 2025-11-25 15:40:04,562 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895363899/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,563 | INFO     | extracted standard info from prmon json
[2025-11-25 10:40:58] 2025-11-25 15:40:04,563 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:40:58] 2025-11-25 15:40:04,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:40:58] 2025-11-25 15:40:04,675 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:40:58] 2025-11-25 15:40:04,677 | INFO     | sum of square deviations: 719736945720.0231
[2025-11-25 10:40:58] 2025-11-25 15:40:04,801 | INFO     | sum of deviations: 3008768148472.0713
[2025-11-25 10:40:58] 2025-11-25 15:40:04,802 | INFO     | mean x: 1764044800.773414
[2025-11-25 10:40:58] 2025-11-25 15:40:04,802 | INFO     | mean y: 2957216.916918429
[2025-11-25 10:40:58] 2025-11-25 15:40:04,802 | INFO     | intersect: -7371406209.34168
[2025-11-25 10:40:58] 2025-11-25 15:40:04,803 | INFO     | chi2: 20.324814850651034
[2025-11-25 10:40:58] 2025-11-25 15:40:04,808 | INFO     | sum of square deviations: 711615491981.2465
[2025-11-25 10:40:58] 2025-11-25 15:40:04,870 | INFO     | sum of deviations: 3532370136014.2075
[2025-11-25 10:40:58] 2025-11-25 15:40:04,870 | INFO     | mean x: 1764044648.2858226
[2025-11-25 10:40:58] 2025-11-25 15:40:04,870 | INFO     | mean y: 2967046.572403336
[2025-11-25 10:40:58] 2025-11-25 15:40:04,870 | INFO     | intersect: -8753529550.841108
[2025-11-25 10:40:58] 2025-11-25 15:40:04,871 | INFO     | chi2: 16.17851244333806
[2025-11-25 10:40:58] 2025-11-25 15:40:04,871 | INFO     | current chi2=16.17851244333806 (change=20.400197678455903 %)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,872 | INFO     | right removable region: 1318
[2025-11-25 10:40:58] 2025-11-25 15:40:04,873 | INFO     | sum of square deviations: 711612848241.2472
[2025-11-25 10:40:58] 2025-11-25 15:40:04,906 | INFO     | sum of deviations: 2512813261066.083
[2025-11-25 10:40:58] 2025-11-25 15:40:04,906 | INFO     | mean x: 1764044953.2858226
[2025-11-25 10:40:58] 2025-11-25 15:40:04,906 | INFO     | mean y: 2966525.458680819
[2025-11-25 10:40:58] 2025-11-25 15:40:04,906 | INFO     | intersect: -6226144658.64765
[2025-11-25 10:40:58] 2025-11-25 15:40:04,907 | INFO     | chi2: 16.919056436872264
[2025-11-25 10:40:58] 2025-11-25 15:40:04,907 | INFO     | current chi2=16.919056436872264 (change=16.756651604477856 %)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,907 | INFO     | left removable region: 10
[2025-11-25 10:40:58] 2025-11-25 15:40:04,908 | INFO     | sum of square deviations: 693958630782.4841
[2025-11-25 10:40:58] 2025-11-25 15:40:04,940 | INFO     | sum of deviations: 2632840078761.077
[2025-11-25 10:40:58] 2025-11-25 15:40:04,940 | INFO     | mean x: 1764044922.8134556
[2025-11-25 10:40:58] 2025-11-25 15:40:04,940 | INFO     | mean y: 2987336.8937308867
[2025-11-25 10:40:58] 2025-11-25 15:40:04,940 | INFO     | intersect: -6689700047.4844055
[2025-11-25 10:40:58] 2025-11-25 15:40:04,941 | INFO     | chi2: 8.935306561451043
[2025-11-25 10:40:58] 2025-11-25 15:40:04,941 | INFO     | current memory leak: 3.79 B/s (using 1308 data points, chi2=8.94)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,943 | INFO     | could have reported an average CPU frequency of 2980 MHz (48 samples)
[2025-11-25 10:40:58] 2025-11-25 15:40:04,943 | INFO     | ..............................
[2025-11-25 10:40:58] 2025-11-25 15:40:04,943 | INFO     | . Timing measurements:
[2025-11-25 10:40:58] 2025-11-25 15:40:04,943 | INFO     | . get job = 0 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | . initial setup = 2 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | . payload setup = 10 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | . stage-in = 0 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | . payload execution = 80731 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | . stage-out = 11 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | . log creation = 3 s
[2025-11-25 10:40:58] 2025-11-25 15:40:04,944 | INFO     | ..............................
[2025-11-25 10:40:58] 2025-11-25 15:40:05,103 | INFO     | 
[2025-11-25 10:40:58] 2025-11-25 15:40:05,103 | INFO     | job summary report
[2025-11-25 10:40:58] 2025-11-25 15:40:05,103 | INFO     | --------------------------------------------------
[2025-11-25 10:40:58] 2025-11-25 15:40:05,103 | INFO     | PanDA job id: 6895363899
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | task id: 47556137
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | errors: (none)
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | pilot state: finished 
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | transexitcode: 0
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | exeerrorcode: 0
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | exeerrordiag: 
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | exitcode: 0
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | exitmsg: OK
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | cpuconsumptiontime: 218316 s
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | nevents: 1000
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | neventsw: 0
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | pid: 2129084
[2025-11-25 10:40:58] 2025-11-25 15:40:05,104 | INFO     | pgrp: 2129084
[2025-11-25 10:40:58] 2025-11-25 15:40:05,105 | INFO     | corecount: 8
[2025-11-25 10:40:58] 2025-11-25 15:40:05,105 | INFO     | event service: False
[2025-11-25 10:40:58] 2025-11-25 15:40:05,105 | INFO     | sizes: {0: 2284088, 1: 2284287, 9: 2284549, 11: 2284577, 80744: 2347340, 80756: 2356523, 80777: 2356713}
[2025-11-25 10:40:58] 2025-11-25 15:40:05,105 | INFO     | --------------------------------------------------
[2025-11-25 10:40:58] 2025-11-25 15:40:05,105 | INFO     | 
[2025-11-25 10:40:58] 2025-11-25 15:40:05,105 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 10:40:58] 2025-11-25 15:40:05,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | job 6895363899 has completed (purged errors)
[2025-11-25 10:40:58] 2025-11-25 15:40:05,197 | INFO     | overall cleanup function is called
[2025-11-25 10:40:58] 2025-11-25 15:40:06,283 | INFO     | --- collectZombieJob: --- 10, [2129084]
[2025-11-25 10:40:58] 2025-11-25 15:40:06,283 | INFO     | zombie collector waiting for pid 2129084
[2025-11-25 10:40:58] 2025-11-25 15:40:06,283 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:40:58] 2025-11-25 15:40:06,283 | INFO     | collected zombie processes
[2025-11-25 10:40:58] 2025-11-25 15:40:06,283 | INFO     | will attempt to kill all subprocesses of pid=2129084
[2025-11-25 10:40:58] 2025-11-25 15:40:07,586 | INFO     | process IDs to be killed: [2129084] (in reverse order)
[2025-11-25 10:40:58] 2025-11-25 15:40:07,920 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:40:58] 2025-11-25 15:40:07,921 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:40:58] 2025-11-25 15:40:08,011 | INFO     | did not find any defunct processes belonging to 2129084
[2025-11-25 10:40:58] 2025-11-25 15:40:08,070 | INFO     | did not find any defunct processes belonging to 2129084
[2025-11-25 10:40:58] 2025-11-25 15:40:08,077 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:40:58] 2025-11-25 15:40:08,077 | INFO     | ready for new job
[2025-11-25 10:40:58] 2025-11-25 15:40:08,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:40:58] 2025-11-25 15:40:08,106 | INFO     | ***************************************
[2025-11-25 10:40:58] 2025-11-25 15:40:08,107 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:40:58] 2025-11-25 15:40:08,107 | INFO     | ***************************************
[2025-11-25 10:40:58] 2025-11-25 15:40:08,107 | INFO     | 
[2025-11-25 10:40:58] 2025-11-25 15:40:08,141 | INFO     | architecture information:
[2025-11-25 10:40:58] 2025-11-25 15:40:08,149 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:40:58] 2025-11-25 15:40:08,259 | INFO     | cat /etc/os-release:
[2025-11-25 10:40:58] NAME="CentOS Linux"
[2025-11-25 10:40:58] VERSION="7 (Core)"
[2025-11-25 10:40:58] ID="centos"
[2025-11-25 10:40:58] ID_LIKE="rhel fedora"
[2025-11-25 10:40:58] VERSION_ID="7"
[2025-11-25 10:40:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:40:58] ANSI_COLOR="0;31"
[2025-11-25 10:40:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:40:58] HOME_URL="https://www.centos.org/"
[2025-11-25 10:40:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:40:58] 
[2025-11-25 10:40:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:40:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:40:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:40:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:40:58] 
[2025-11-25 10:40:58] 2025-11-25 15:40:08,259 | INFO     | ***************************************
[2025-11-25 10:40:58] 2025-11-25 15:40:08,763 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 10:40:58] 2025-11-25 15:40:08,834 | INFO     | sufficient remaining disk space (119780933632 B)
[2025-11-25 10:40:58] 2025-11-25 15:40:08,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:40:58] 2025-11-25 15:40:08,835 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:40:58] 2025-11-25 15:40:08,835 | INFO     | update_server=False
[2025-11-25 10:40:58] 2025-11-25 15:40:08,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:40:58] 2025-11-25 15:40:08,836 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:40:58] 2025-11-25 15:40:08,883 | INFO     | all payload control threads have been joined
[2025-11-25 10:40:58] 2025-11-25 15:40:09,230 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 10:40:58] 2025-11-25 15:40:09,231 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 10:40:58] 2025-11-25 15:40:09,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:40:58] 2025-11-25 15:40:09,231 | INFO     | will abort loop
[2025-11-25 10:40:58] 2025-11-25 15:40:09,687 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:40:58] 2025-11-25 15:40:09,841 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:09,889 | INFO     | [payload] control thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:09,919 | INFO     | all data control threads have been joined
[2025-11-25 10:40:58] 2025-11-25 15:40:10,065 | INFO     | [job] validate thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,069 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,092 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:40:58] 2025-11-25 15:40:10,217 | INFO     | all job control threads have been joined
[2025-11-25 10:40:58] 2025-11-25 15:40:10,237 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,295 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,832 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,840 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:10,926 | INFO     | [data] control thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:11,144 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:11,222 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:11,226 | INFO     | [job] control thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:11,235 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:11,693 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:12,844 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:40:58] 2025-11-25 15:40:39,311 | INFO     | PID=2120435 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 10:40:58] 2025-11-25 15:40:39,312 | INFO     | .. there are 27 such processes running
[2025-11-25 10:40:58] 2025-11-25 15:40:39,378 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:40:58] 2025-11-25 15:40:39,378 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:40:58] 2025-11-25 15:40:39,378 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:40:58] 2025-11-25 15:40:51,083 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:40:58] 2025-11-25 15:40:52,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139853231961920)>', '<ExcThread(monitor, started 139852884453120)>']
[2025-11-25 10:40:58] 2025-11-25 15:40:52,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:40:58] 2025-11-25 15:40:52,459 | INFO     | [monitor] control thread has ended
[2025-11-25 10:40:58] 2025-11-25 15:40:57,115 | INFO     | all workflow threads have been joined
[2025-11-25 10:40:58] 2025-11-25 15:40:57,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:40:58] 2025-11-25 15:40:57,116 | INFO     | traces error code: 0
[2025-11-25 10:40:58] 2025-11-25 15:40:57,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:40:58] 2025-11-25 15:40:58,185 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:40:58] 2025-11-25 15:40:58,187 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:40:58] 2025-11-25 15:40:58,190 [wrapper] pilotpid: 2120435
[2025-11-25 10:40:58] 2025-11-25 15:40:58,199 [wrapper] Pilot exit status: 0
[2025-11-25 10:40:58] 2025-11-25 15:40:58,232 [wrapper] pandaids: 6895363899
[2025-11-25 10:40:58] 2025-11-25 15:40:58,329 [wrapper] cleanup supervisor_pilot 2098815 2120436
[2025-11-25 10:40:58] 2025-11-25 15:40:58,332 [wrapper] Test setup, not cleaning
[2025-11-25 10:40:58] 2025-11-25 15:40:58,347 [wrapper] apfmon messages muted
[2025-11-25 10:40:58] 2025-11-25 15:40:58,350 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:40:58] 2025-11-25 15:40:58,352 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:40:58]  *** Error codes and diagnostics ***
[2025-11-25 10:40:58]     "exeErrorCode": 0,
[2025-11-25 10:40:58]     "exeErrorDiag": "",
[2025-11-25 10:40:58]     "pilotErrorCode": 0,
[2025-11-25 10:40:58]     "pilotErrorDiag": "",
[2025-11-25 10:40:58]  *** Listing of results directory ***
[2025-11-25 10:40:58] total 1331488
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 10:18 pilot3.tar.gz
[2025-11-25 10:40:58] -rwx------. 1 boincer umatlas     36292 Nov 23 10:34 runpilot2-wrapper.sh
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:34 queuedata.json
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas       100 Nov 24 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:40:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 12:13 run_atlas
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas       105 Nov 24 12:13 job.xml
[2025-11-25 10:40:58] -rw-r--r--. 2 boincer umatlas 410002957 Nov 24 12:13 EVNT.47483658._000796.pool.root.1
[2025-11-25 10:40:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:13 start_atlas.sh
[2025-11-25 10:40:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 12:13 shared
[2025-11-25 10:40:58] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 12:13 input.tar.gz
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas         0 Nov 24 12:13 boinc_lockfile
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 12:13 pandaJob.out
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas        57 Nov 24 12:13 setup.sh.local
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas    991965 Nov 24 12:13 agis_schedconf.cvmfs.json
[2025-11-25 10:40:58] drwx------. 5 boincer umatlas      4096 Nov 24 12:13 pilot3
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas       533 Nov 25 10:16 boinc_task_state.xml
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas 924362331 Nov 25 10:35 HITS.47556137._007827.pool.root.1
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas      6948 Nov 25 10:37 init_data.xml
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas      1072 Nov 25 10:39 memory_monitor_summary.json
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas   1516240 Nov 25 10:39 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas   2373146 Nov 25 10:39 log.47556137._007827.job.log.tgz.1
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas      8633 Nov 25 10:40 heartbeat.json
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas        95 Nov 25 10:40 pilot_heartbeat.json
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas        29 Nov 25 10:40 wrapper_checkpoint.txt
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 10:40 boinc_mmap_file
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas      5011 Nov 25 10:40 pilotlog.txt
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas  10206046 Nov 25 10:40 log.47556137._007827.job.log.1
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas       353 Nov 25 10:40 output.list
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas       620 Nov 25 10:40 runtime_log
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas  12595200 Nov 25 10:40 result.tar.gz
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 10:40 runtime_log.err
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas       665 Nov 25 10:40 lgmLDmSHRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk0KKDma8rbyn.diag
[2025-11-25 10:40:58] -rw-r--r--. 1 boincer umatlas     21744 Nov 25 10:40 stderr.txt
[2025-11-25 10:40:58] HITS file was successfully produced:
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas 924362331 Nov 25 10:35 shared/HITS.pool.root.1
[2025-11-25 10:40:58]  *** Contents of shared directory: ***
[2025-11-25 10:40:58] total 1316000
[2025-11-25 10:40:58] -rw-r--r--. 2 boincer umatlas 410002957 Nov 24 12:13 ATLAS.root_0
[2025-11-25 10:40:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:13 start_atlas.sh
[2025-11-25 10:40:58] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 12:13 input.tar.gz
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas 924362331 Nov 25 10:35 HITS.pool.root.1
[2025-11-25 10:40:58] -rw-------. 1 boincer umatlas  12595200 Nov 25 10:40 result.tar.gz
10:41:20 (2116726): run_atlas exited; CPU time 219976.047539
10:41:20 (2116726): called boinc_finish(0)

</stderr_txt>
]]>

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