Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:12:42 (3479916): wrapper (7.7.26015): starting
07:12:42 (3479916): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 07:12:42] Arguments: --nthreads 8
[2025-11-24 07:12:42] Threads: 8
[2025-11-24 07:12:42] Checking for CVMFS
[2025-11-24 07:12:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 07:12:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 07:12:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 07:12:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 07:12:44] 2.13.2.0 8790 32943 208120 153245 2 81 23866366 40959995 9327 16776704 0 30286226 99.673 23240376 36497 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 07:12:44] CVMFS is ok
[2025-11-24 07:12:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 07:12:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 07:12:44] Further information can be found at the LHC@home message board.
[2025-11-24 07:12:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 07:12:44] Checking for apptainer binary...
[2025-11-24 07:12:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 07:12:44] Running /usr/bin/apptainer --version
[2025-11-24 07:12:44] apptainer version 1.4.4-1.el9
[2025-11-24 07:12:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 07:12:45] c-210-33-1.aglt2.org
[2025-11-24 07:12:45] apptainer works
[2025-11-24 07:12:45] Set ATHENA_PROC_NUMBER=8
[2025-11-24 07:12:45] Set ATHENA_CORE_NUMBER=8
[2025-11-24 07:12:45] Starting ATLAS job with PandaID=6895362399
[2025-11-24 07:12:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:48:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:48:42] 2025-11-25 10:47:53,304 | INFO     | monitor loop #5118: job 0:6895362399 is in state 'finished'
[2025-11-25 05:48:42] 2025-11-25 10:47:53,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:48:42] 2025-11-25 10:47:53,944 | INFO     | time since job start (81246s) is within the limit (172800.0s)
[2025-11-25 05:48:42] 2025-11-25 10:47:55,869 | INFO     | monitor loop #5119: job 0:6895362399 is in state 'finished'
[2025-11-25 05:48:42] 2025-11-25 10:47:55,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:48:42] 2025-11-25 10:47:58,473 | INFO     | monitor loop #5120: job 0:6895362399 is in state 'finished'
[2025-11-25 05:48:42] 2025-11-25 10:47:58,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:48:42] 2025-11-25 10:47:59,004 | INFO     | PID=3491830 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 05:48:42] 2025-11-25 10:47:59,005 | INFO     | .. there are 12 such processes running
[2025-11-25 05:48:42] 2025-11-25 10:48:00,006 | INFO     | time since job start (81253s) is within the limit (172800.0s)
[2025-11-25 05:48:42] 2025-11-25 10:48:00,979 | INFO     | monitor loop #5121: job 0:6895362399 is in state 'finished'
[2025-11-25 05:48:42] 2025-11-25 10:48:00,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:48:42] 2025-11-25 10:48:02,049 | INFO     | time since job start (81255s) is within the limit (172800.0s)
[2025-11-25 05:48:42] 2025-11-25 10:48:03,484 | INFO     | monitor loop #5122: job 0:6895362399 is in state 'finished'
[2025-11-25 05:48:42] 2025-11-25 10:48:03,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:48:42] 2025-11-25 10:48:04,095 | INFO     | time since job start (81257s) is within the limit (172800.0s)
[2025-11-25 05:48:42] 2025-11-25 10:48:05,487 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 05:48:42] 2025-11-25 10:48:05,495 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2628.7678214285706
[2025-11-25 05:48:42] 2025-11-25 10:48:05,505 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895362399/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:48:42] 2025-11-25 10:48:05,505 | INFO     | extracted standard info from prmon json
[2025-11-25 05:48:42] 2025-11-25 10:48:05,505 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:48:42] 2025-11-25 10:48:05,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:48:42] 2025-11-25 10:48:05,528 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:48:42] 2025-11-25 10:48:05,530 | INFO     | sum of square deviations: 728052015879.0046
[2025-11-25 05:48:42] 2025-11-25 10:48:05,568 | INFO     | sum of deviations: 3596953708949.387
[2025-11-25 05:48:42] 2025-11-25 10:48:05,569 | INFO     | mean x: 1764027079.7705042
[2025-11-25 05:48:42] 2025-11-25 10:48:05,569 | INFO     | mean y: 2872765.6373212943
[2025-11-25 05:48:42] 2025-11-25 10:48:05,569 | INFO     | intersect: -8712333852.679592
[2025-11-25 05:48:42] 2025-11-25 10:48:05,570 | INFO     | chi2: 21.75325158072848
[2025-11-25 05:48:42] 2025-11-25 10:48:05,572 | INFO     | sum of square deviations: 719870564650.7524
[2025-11-25 05:48:42] 2025-11-25 10:48:05,604 | INFO     | sum of deviations: 4025124787594.779
[2025-11-25 05:48:42] 2025-11-25 10:48:05,605 | INFO     | mean x: 1764026927.297583
[2025-11-25 05:48:42] 2025-11-25 10:48:05,605 | INFO     | mean y: 2880743.7771903323
[2025-11-25 05:48:42] 2025-11-25 10:48:05,605 | INFO     | intersect: -9860598692.27247
[2025-11-25 05:48:42] 2025-11-25 10:48:05,606 | INFO     | chi2: 18.664750031095657
[2025-11-25 05:48:42] 2025-11-25 10:48:05,607 | INFO     | current chi2=18.664750031095657 (change=14.197884569904812 %)
[2025-11-25 05:48:42] 2025-11-25 10:48:05,607 | INFO     | right removable region: 1323
[2025-11-25 05:48:42] 2025-11-25 10:48:05,608 | INFO     | sum of square deviations: 719864507735.96
[2025-11-25 05:48:42] 2025-11-25 10:48:05,640 | INFO     | sum of deviations: 3059778532514.104
[2025-11-25 05:48:42] 2025-11-25 10:48:05,640 | INFO     | mean x: 1764027232.299849
[2025-11-25 05:48:42] 2025-11-25 10:48:05,640 | INFO     | mean y: 2882771.506042296
[2025-11-25 05:48:42] 2025-11-25 10:48:05,640 | INFO     | intersect: -7495101360.448296
[2025-11-25 05:48:42] 2025-11-25 10:48:05,642 | INFO     | chi2: 17.556498639544305
[2025-11-25 05:48:42] 2025-11-25 10:48:05,642 | INFO     | current chi2=17.556498639544305 (change=19.292531627327566 %)
[2025-11-25 05:48:42] 2025-11-25 10:48:05,642 | INFO     | left removable region: 10
[2025-11-25 05:48:42] 2025-11-25 10:48:05,644 | INFO     | sum of square deviations: 702075832449.4943
[2025-11-25 05:48:42] 2025-11-25 10:48:05,675 | INFO     | sum of deviations: 3117813175827.6504
[2025-11-25 05:48:42] 2025-11-25 10:48:05,675 | INFO     | mean x: 1764027201.8606246
[2025-11-25 05:48:42] 2025-11-25 10:48:05,676 | INFO     | mean y: 2900882.3259710586
[2025-11-25 05:48:42] 2025-11-25 10:48:05,676 | INFO     | intersect: -7830878601.708738
[2025-11-25 05:48:42] 2025-11-25 10:48:05,677 | INFO     | chi2: 11.030156504982738
[2025-11-25 05:48:42] 2025-11-25 10:48:05,677 | INFO     | current memory leak: 4.44 B/s (using 1313 data points, chi2=11.03)
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | could have reported an average CPU frequency of 2860 MHz (48 samples)
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | ..............................
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . Timing measurements:
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . get job = 0 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . initial setup = 7 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . payload setup = 51 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . stage-in = 0 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . payload execution = 81086 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,679 | INFO     | . stage-out = 18 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,680 | INFO     | . log creation = 6 s
[2025-11-25 05:48:42] 2025-11-25 10:48:05,680 | INFO     | ..............................
[2025-11-25 05:48:42] 2025-11-25 10:48:06,171 | INFO     | time since job start (81259s) is within the limit (172800.0s)
[2025-11-25 05:48:42] 2025-11-25 10:48:06,171 | INFO     | 
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | job summary report
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | --------------------------------------------------
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | PanDA job id: 6895362399
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | task id: 47556137
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | errors: (none)
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | pilot state: finished 
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | transexitcode: 0
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | exeerrorcode: 0
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | exeerrordiag: 
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | exitcode: 0
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | exitmsg: OK
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | cpuconsumptiontime: 236610 s
[2025-11-25 05:48:42] 2025-11-25 10:48:06,172 | INFO     | nevents: 1000
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | neventsw: 0
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | pid: 3498619
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | pgrp: 3498619
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | corecount: 8
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | event service: False
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | sizes: {0: 2284083, 1: 2284338, 12: 2284338, 23: 2284366, 30: 2284656, 35: 2284684, 81139: 2348232, 81140: 2348231, 81159: 2357286, 81163: 2357342, 81199: 2357588}
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | --------------------------------------------------
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | 
[2025-11-25 05:48:42] 2025-11-25 10:48:06,173 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 05:48:42] 2025-11-25 10:48:06,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:48:42] 2025-11-25 10:48:06,253 | INFO     | job 6895362399 has completed (purged errors)
[2025-11-25 05:48:42] 2025-11-25 10:48:06,254 | INFO     | overall cleanup function is called
[2025-11-25 05:48:42] 2025-11-25 10:48:07,323 | INFO     | --- collectZombieJob: --- 10, [3498619]
[2025-11-25 05:48:42] 2025-11-25 10:48:07,323 | INFO     | zombie collector waiting for pid 3498619
[2025-11-25 05:48:42] 2025-11-25 10:48:07,324 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:48:42] 2025-11-25 10:48:07,324 | INFO     | collected zombie processes
[2025-11-25 05:48:42] 2025-11-25 10:48:07,324 | INFO     | will attempt to kill all subprocesses of pid=3498619
[2025-11-25 05:48:42] 2025-11-25 10:48:09,022 | INFO     | process IDs to be killed: [3498619] (in reverse order)
[2025-11-25 05:48:42] 2025-11-25 10:48:09,519 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:48:42] 2025-11-25 10:48:09,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:48:42] 2025-11-25 10:48:09,571 | INFO     | did not find any defunct processes belonging to 3498619
[2025-11-25 05:48:42] 2025-11-25 10:48:09,599 | INFO     | did not find any defunct processes belonging to 3498619
[2025-11-25 05:48:42] 2025-11-25 10:48:09,618 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:48:42] 2025-11-25 10:48:09,618 | INFO     | ready for new job
[2025-11-25 05:48:42] 2025-11-25 10:48:09,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:48:42] 2025-11-25 10:48:09,648 | INFO     | ***************************************
[2025-11-25 05:48:42] 2025-11-25 10:48:09,649 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:48:42] 2025-11-25 10:48:09,649 | INFO     | ***************************************
[2025-11-25 05:48:42] 2025-11-25 10:48:09,649 | INFO     | 
[2025-11-25 05:48:42] 2025-11-25 10:48:09,683 | INFO     | architecture information:
[2025-11-25 05:48:42] 2025-11-25 10:48:09,708 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:48:42] 2025-11-25 10:48:09,825 | INFO     | cat /etc/os-release:
[2025-11-25 05:48:42] NAME="CentOS Linux"
[2025-11-25 05:48:42] VERSION="7 (Core)"
[2025-11-25 05:48:42] ID="centos"
[2025-11-25 05:48:42] ID_LIKE="rhel fedora"
[2025-11-25 05:48:42] VERSION_ID="7"
[2025-11-25 05:48:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:48:42] ANSI_COLOR="0;31"
[2025-11-25 05:48:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:48:42] HOME_URL="https://www.centos.org/"
[2025-11-25 05:48:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:48:42] 
[2025-11-25 05:48:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:48:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:48:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:48:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:48:42] 
[2025-11-25 05:48:42] 2025-11-25 10:48:09,825 | INFO     | ***************************************
[2025-11-25 05:48:42] 2025-11-25 10:48:10,328 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 05:48:42] 2025-11-25 10:48:10,463 | INFO     | sufficient remaining disk space (70038585344 B)
[2025-11-25 05:48:42] 2025-11-25 10:48:10,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:48:42] 2025-11-25 10:48:10,463 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:48:42] 2025-11-25 10:48:10,463 | INFO     | update_server=False
[2025-11-25 05:48:42] 2025-11-25 10:48:10,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:48:42] 2025-11-25 10:48:10,475 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:48:42] 2025-11-25 10:48:10,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:48:42] 2025-11-25 10:48:10,476 | INFO     | aborting loop
[2025-11-25 05:48:42] 2025-11-25 10:48:10,526 | INFO     | all data control threads have been joined
[2025-11-25 05:48:42] 2025-11-25 10:48:10,563 | INFO     | all job control threads have been joined
[2025-11-25 05:48:42] 2025-11-25 10:48:11,163 | INFO     | all payload control threads have been joined
[2025-11-25 05:48:42] 2025-11-25 10:48:11,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:48:42] 2025-11-25 10:48:11,486 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:11,493 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:11,532 | INFO     | [data] control thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:11,596 | INFO     | [job] control thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:11,946 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:11,982 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,037 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,044 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,166 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,169 | INFO     | [payload] control thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,201 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,202 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,386 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,447 | INFO     | [job] validate thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,499 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:12,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:48:42] 2025-11-25 10:48:13,809 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:48:42] 2025-11-25 10:48:16,550 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:48:42] 2025-11-25 10:48:17,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139953048643392)>', '<ExcThread(monitor, started 139952532723456)>']
[2025-11-25 05:48:42] 2025-11-25 10:48:22,054 | INFO     | all workflow threads have been joined
[2025-11-25 05:48:42] 2025-11-25 10:48:22,054 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:48:42] 2025-11-25 10:48:22,055 | INFO     | traces error code: 0
[2025-11-25 05:48:42] 2025-11-25 10:48:22,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:48:42] 2025-11-25 10:48:40,783 | INFO     | PID=3491830 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 05:48:42] 2025-11-25 10:48:40,817 | INFO     | .. there are 12 such processes running
[2025-11-25 05:48:42] 2025-11-25 10:48:40,817 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:48:42] 2025-11-25 10:48:40,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:48:42] 2025-11-25 10:48:40,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:48:42] 2025-11-25 10:48:40,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:48:42] 2025-11-25 10:48:40,817 | INFO     | [monitor] control thread has ended
[2025-11-25 05:48:42] 2025-11-25 10:48:41,279 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:48:42] 2025-11-25 10:48:41,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:48:42] 2025-11-25 10:48:41,365 [wrapper] pilotpid: 3491830
[2025-11-25 05:48:42] 2025-11-25 10:48:41,449 [wrapper] Pilot exit status: 0
[2025-11-25 05:48:42] 2025-11-25 10:48:41,605 [wrapper] pandaids: 6895362399
[2025-11-25 05:48:42] 2025-11-25 10:48:41,806 [wrapper] cleanup supervisor_pilot 1359037 3491831
[2025-11-25 05:48:42] 2025-11-25 10:48:41,836 [wrapper] Test setup, not cleaning
[2025-11-25 05:48:42] 2025-11-25 10:48:41,839 [wrapper] apfmon messages muted
[2025-11-25 05:48:42] 2025-11-25 10:48:41,843 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:48:42] 2025-11-25 10:48:41,846 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:48:42]  *** Error codes and diagnostics ***
[2025-11-25 05:48:42]     "exeErrorCode": 0,
[2025-11-25 05:48:42]     "exeErrorDiag": "",
[2025-11-25 05:48:42]     "pilotErrorCode": 0,
[2025-11-25 05:48:42]     "pilotErrorDiag": "",
[2025-11-25 05:48:42]  *** Listing of results directory ***
[2025-11-25 05:48:42] total 1332628
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:56 pilot3.tar.gz
[2025-11-25 05:48:42] -rwx------. 1 boincer umatlas     36292 Nov 23 10:08 runpilot2-wrapper.sh
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:08 queuedata.json
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas       100 Nov 24 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:48:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 07:12 run_atlas
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas       105 Nov 24 07:12 job.xml
[2025-11-25 05:48:42] -rw-r--r--. 2 boincer umatlas 409138899 Nov 24 07:12 EVNT.47483658._000784.pool.root.1
[2025-11-25 05:48:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 07:12 start_atlas.sh
[2025-11-25 05:48:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 07:12 shared
[2025-11-25 05:48:42] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 07:12 input.tar.gz
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas         0 Nov 24 07:12 boinc_lockfile
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 07:12 pandaJob.out
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas        57 Nov 24 07:12 setup.sh.local
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas    989803 Nov 24 07:13 agis_schedconf.cvmfs.json
[2025-11-25 05:48:42] drwx------. 5 boincer umatlas      4096 Nov 24 07:13 pilot3
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas       533 Nov 25 05:08 boinc_task_state.xml
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas 925597715 Nov 25 05:45 HITS.47556137._007728.pool.root.1
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas      1060 Nov 25 05:47 memory_monitor_summary.json
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas   1516240 Nov 25 05:47 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas   2425901 Nov 25 05:47 log.47556137._007728.job.log.tgz.1
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas        95 Nov 25 05:47 pilot_heartbeat.json
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas      8625 Nov 25 05:48 heartbeat.json
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 05:48 init_data.xml
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas        29 Nov 25 05:48 wrapper_checkpoint.txt
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 05:48 boinc_mmap_file
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas       823 Nov 25 05:48 pilotlog.txt
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas  10551381 Nov 25 05:48 log.47556137._007728.job.log.1
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas       353 Nov 25 05:48 output.list
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas       620 Nov 25 05:48 runtime_log
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas  12994560 Nov 25 05:48 result.tar.gz
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas      9353 Nov 25 05:48 runtime_log.err
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas       662 Nov 25 05:48 J6lLDmZsQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQbIKDmfVdsGo.diag
[2025-11-25 05:48:42] -rw-r--r--. 1 boincer umatlas     21893 Nov 25 05:48 stderr.txt
[2025-11-25 05:48:42] HITS file was successfully produced:
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas 925597715 Nov 25 05:45 shared/HITS.pool.root.1
[2025-11-25 05:48:42]  *** Contents of shared directory: ***
[2025-11-25 05:48:42] total 1316756
[2025-11-25 05:48:42] -rw-r--r--. 2 boincer umatlas 409138899 Nov 24 07:12 ATLAS.root_0
[2025-11-25 05:48:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 07:12 start_atlas.sh
[2025-11-25 05:48:42] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 07:12 input.tar.gz
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas 925597715 Nov 25 05:45 HITS.pool.root.1
[2025-11-25 05:48:42] -rw-------. 1 boincer umatlas  12994560 Nov 25 05:48 result.tar.gz
05:49:04 (3479916): run_atlas exited; CPU time 237577.722167
05:49:04 (3479916): called boinc_finish(0)

</stderr_txt>
]]>

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