Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:40 (1551378): wrapper (7.7.26015): starting
02:00:40 (1551378): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 02:00:40] Arguments: --nthreads 3
[2025-11-27 02:00:40] Threads: 3
[2025-11-27 02:00:40] Checking for CVMFS
[2025-11-27 02:00:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:00:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:00:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:00:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:00:40] 2.9.2.0 4159227 11820 95772 153341 1 81 36591615 36864001 0 130560 1 4384186 99.935 589981 754 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 02:00:40] CVMFS is ok
[2025-11-27 02:00:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:00:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:00:40] Further information can be found at the LHC@home message board.
[2025-11-27 02:00:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:00:40] Checking for apptainer binary...
[2025-11-27 02:00:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:00:40] Running /usr/bin/apptainer --version
[2025-11-27 02:00:40] apptainer version 1.4.1-1.1
[2025-11-27 02:00:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:00:40] thA349
[2025-11-27 02:00:40] apptainer works
[2025-11-27 02:00:41] Set ATHENA_PROC_NUMBER=3
[2025-11-27 02:00:41] Set ATHENA_CORE_NUMBER=3
[2025-11-27 02:00:41] Starting ATLAS job with PandaID=6895353405
[2025-11-27 02:00:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:53:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:53:27] 2025-11-27 08:52:54,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | job 6895353405 has completed (purged errors)
[2025-11-27 09:53:27] 2025-11-27 08:52:54,013 | INFO     | overall cleanup function is called
[2025-11-27 09:53:27] 2025-11-27 08:52:55,021 | INFO     | --- collectZombieJob: --- 10, [1561557]
[2025-11-27 09:53:27] 2025-11-27 08:52:55,022 | INFO     | zombie collector waiting for pid 1561557
[2025-11-27 09:53:27] 2025-11-27 08:52:55,022 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:53:27] 2025-11-27 08:52:55,022 | INFO     | collected zombie processes
[2025-11-27 09:53:27] 2025-11-27 08:52:55,022 | INFO     | will attempt to kill all subprocesses of pid=1561557
[2025-11-27 09:53:27] 2025-11-27 08:52:55,065 | INFO     | process IDs to be killed: [1561557] (in reverse order)
[2025-11-27 09:53:27] 2025-11-27 08:52:55,090 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:53:27] 2025-11-27 08:52:55,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:53:27] 2025-11-27 08:52:55,092 | INFO     | did not find any defunct processes belonging to 1561557
[2025-11-27 09:53:27] 2025-11-27 08:52:55,093 | INFO     | did not find any defunct processes belonging to 1561557
[2025-11-27 09:53:27] 2025-11-27 08:52:55,094 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:53:27] 2025-11-27 08:52:55,094 | INFO     | ready for new job
[2025-11-27 09:53:27] 2025-11-27 08:52:55,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:53:27] 2025-11-27 08:52:55,095 | INFO     | ***************************************
[2025-11-27 09:53:27] 2025-11-27 08:52:55,095 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:53:27] 2025-11-27 08:52:55,095 | INFO     | ***************************************
[2025-11-27 09:53:27] 2025-11-27 08:52:55,095 | INFO     | 
[2025-11-27 09:53:27] 2025-11-27 08:52:55,095 | INFO     | architecture information:
[2025-11-27 09:53:27] 2025-11-27 08:52:55,096 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:53:27] 2025-11-27 08:52:55,105 | INFO     | cat /etc/os-release:
[2025-11-27 09:53:27] NAME="CentOS Linux"
[2025-11-27 09:53:27] VERSION="7 (Core)"
[2025-11-27 09:53:27] ID="centos"
[2025-11-27 09:53:27] ID_LIKE="rhel fedora"
[2025-11-27 09:53:27] VERSION_ID="7"
[2025-11-27 09:53:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:53:27] ANSI_COLOR="0;31"
[2025-11-27 09:53:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:53:27] HOME_URL="https://www.centos.org/"
[2025-11-27 09:53:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:53:27] 
[2025-11-27 09:53:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:53:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:53:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:53:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:53:27] 
[2025-11-27 09:53:27] 2025-11-27 08:52:55,105 | INFO     | ***************************************
[2025-11-27 09:53:27] 2025-11-27 08:52:55,608 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 09:53:27] 2025-11-27 08:52:55,621 | INFO     | sufficient remaining disk space (264461352960 B)
[2025-11-27 09:53:27] 2025-11-27 08:52:55,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:53:27] 2025-11-27 08:52:55,622 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:53:27] 2025-11-27 08:52:55,622 | INFO     | update_server=False
[2025-11-27 09:53:27] 2025-11-27 08:52:55,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:53:27] 2025-11-27 08:52:55,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:53:27] 2025-11-27 08:52:55,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:53:27] 2025-11-27 08:52:55,903 | INFO     | all job control threads have been joined
[2025-11-27 09:53:27] 2025-11-27 08:52:55,904 | INFO     | all data control threads have been joined
[2025-11-27 09:53:27] 2025-11-27 08:52:55,986 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 09:53:27] 2025-11-27 08:52:55,987 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 09:53:27] 2025-11-27 08:52:55,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:53:27] 2025-11-27 08:52:55,987 | INFO     | will abort loop
[2025-11-27 09:53:27] 2025-11-27 08:52:56,627 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:56,628 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:56,755 | INFO     | all payload control threads have been joined
[2025-11-27 09:53:27] 2025-11-27 08:52:56,828 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:56,909 | INFO     | [job] control thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:56,909 | INFO     | [data] control thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:56,949 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:56,992 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,038 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,271 | INFO     | [job] validate thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,370 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,465 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,761 | INFO     | [payload] control thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:57,876 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:52:59,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:53:27] 2025-11-27 08:53:03,085 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:53:06,254 | INFO     | job.realtimelogging is not enabled
[2025-11-27 09:53:27] 2025-11-27 08:53:07,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:53:27] 2025-11-27 08:53:20,873 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:53:27] 2025-11-27 08:53:22,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139979973519168)>', '<ExcThread(monitor, started 139978822645504)>']
[2025-11-27 09:53:27] 2025-11-27 08:53:26,391 | INFO     | PID=1555099 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:53:27] 2025-11-27 08:53:26,391 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:53:27] 2025-11-27 08:53:26,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:53:27] 2025-11-27 08:53:26,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:53:27] 2025-11-27 08:53:26,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:53:27] 2025-11-27 08:53:26,391 | INFO     | [monitor] control thread has ended
[2025-11-27 09:53:27] 2025-11-27 08:53:27,371 | INFO     | all workflow threads have been joined
[2025-11-27 09:53:27] 2025-11-27 08:53:27,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:53:27] 2025-11-27 08:53:27,372 | INFO     | traces error code: 0
[2025-11-27 09:53:27] 2025-11-27 08:53:27,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:53:27] 2025-11-27 08:53:27,423 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:53:27] 2025-11-27 08:53:27,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:53:27] 2025-11-27 08:53:27,428 [wrapper] pilotpid: 1555099
[2025-11-27 09:53:27] 2025-11-27 08:53:27,430 [wrapper] Pilot exit status: 0
[2025-11-27 09:53:27] 2025-11-27 08:53:27,438 [wrapper] pandaids: 6895353405
[2025-11-27 09:53:27] 2025-11-27 08:53:27,455 [wrapper] cleanup supervisor_pilot 1612196 1555100
[2025-11-27 09:53:27] 2025-11-27 08:53:27,457 [wrapper] Test setup, not cleaning
[2025-11-27 09:53:27] 2025-11-27 08:53:27,460 [wrapper] apfmon messages muted
[2025-11-27 09:53:27] 2025-11-27 08:53:27,462 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:53:27] 2025-11-27 08:53:27,465 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:53:27]  *** Error codes and diagnostics ***
[2025-11-27 09:53:27]     "exeErrorCode": 0,
[2025-11-27 09:53:27]     "exeErrorDiag": "",
[2025-11-27 09:53:27]     "pilotErrorCode": 0,
[2025-11-27 09:53:27]     "pilotErrorDiag": "",
[2025-11-27 09:53:27]  *** Listing of results directory ***
[2025-11-27 09:53:27] total 1294988
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc    576529 Nov 23 05:55 pilot3.tar.gz
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:10 queuedata.json
[2025-11-27 09:53:27] -rwx------ 1 boinc boinc     36292 Nov 23 06:11 runpilot2-wrapper.sh
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc       100 Nov 27 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:53:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 02:00 run_atlas
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc       105 Nov 27 02:00 job.xml
[2025-11-27 09:53:27] -rw-r--r-- 2 boinc boinc 407210226 Nov 27 02:00 EVNT.47483658._000620.pool.root.1
[2025-11-27 09:53:27] -rw-r--r-- 2 boinc boinc    590103 Nov 27 02:00 input.tar.gz
[2025-11-27 09:53:27] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:00 start_atlas.sh
[2025-11-27 09:53:27] drwxrwx--x 2 boinc boinc      4096 Nov 27 02:00 shared
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:00 boinc_setup_complete
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc      6447 Nov 27 02:00 init_data.xml
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:00 boinc_lockfile
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc      2786 Nov 27 02:00 pandaJob.out
[2025-11-27 09:53:27] -rw------- 1 boinc boinc    991546 Nov 27 02:00 agis_schedconf.cvmfs.json
[2025-11-27 09:53:27] drwx------ 5 boinc boinc      4096 Nov 27 02:00 pilot3
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc       531 Nov 27 09:49 boinc_task_state.xml
[2025-11-27 09:53:27] -rw------- 1 boinc boinc 904653713 Nov 27 09:52 HITS.47556137._006156.pool.root.1
[2025-11-27 09:53:27] -rw------- 1 boinc boinc      1036 Nov 27 09:52 memory_monitor_summary.json
[2025-11-27 09:53:27] -rw------- 1 boinc boinc   1516240 Nov 27 09:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:53:27] -rw------- 1 boinc boinc   1158915 Nov 27 09:52 log.47556137._006156.job.log.tgz.1
[2025-11-27 09:53:27] -rw------- 1 boinc boinc      8558 Nov 27 09:52 heartbeat.json
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc      8192 Nov 27 09:53 boinc_mmap_file
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc        28 Nov 27 09:53 wrapper_checkpoint.txt
[2025-11-27 09:53:27] -rw------- 1 boinc boinc        95 Nov 27 09:53 pilot_heartbeat.json
[2025-11-27 09:53:27] -rw------- 1 boinc boinc      5010 Nov 27 09:53 pilotlog.txt
[2025-11-27 09:53:27] -rw------- 1 boinc boinc   3988534 Nov 27 09:53 log.47556137._006156.job.log.1
[2025-11-27 09:53:27] -rw------- 1 boinc boinc       353 Nov 27 09:53 output.list
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc       620 Nov 27 09:53 runtime_log
[2025-11-27 09:53:27] -rw------- 1 boinc boinc   5171200 Nov 27 09:53 result.tar.gz
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc      8898 Nov 27 09:53 runtime_log.err
[2025-11-27 09:53:27] -rw------- 1 boinc boinc       665 Nov 27 09:53 gidLDmIZHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKdKKDm3a9SQm.diag
[2025-11-27 09:53:27] -rw-r--r-- 1 boinc boinc     12481 Nov 27 09:53 stderr.txt
[2025-11-27 09:53:27] HITS file was successfully produced:
[2025-11-27 09:53:27] -rw------- 1 boinc boinc 904653713 Nov 27 09:52 shared/HITS.pool.root.1
[2025-11-27 09:53:27]  *** Contents of shared directory: ***
[2025-11-27 09:53:27] total 1286772
[2025-11-27 09:53:27] -rw-r--r-- 2 boinc boinc 407210226 Nov 27 02:00 ATLAS.root_0
[2025-11-27 09:53:27] -rw-r--r-- 2 boinc boinc    590103 Nov 27 02:00 input.tar.gz
[2025-11-27 09:53:27] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:00 start_atlas.sh
[2025-11-27 09:53:27] -rw------- 1 boinc boinc 904653713 Nov 27 09:52 HITS.pool.root.1
[2025-11-27 09:53:27] -rw------- 1 boinc boinc   5171200 Nov 27 09:53 result.tar.gz
09:53:28 (1551378): run_atlas exited; CPU time 83540.168548
09:53:28 (1551378): called boinc_finish(0)

</stderr_txt>
]]>

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