Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
14:32:52 (557559): wrapper (7.7.26015): starting
14:32:52 (557559): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 14:32:52] Arguments: --nthreads 12
[2025-11-24 14:32:52] Threads: 12
[2025-11-24 14:32:52] Checking for CVMFS
[2025-11-24 14:32:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:32:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:32:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:32:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:32:54] 2.13.0.0 557766 0 29868 153247 4 1 4150110 6144001 0 130560 0 0 0.000 1292 1024 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 14:32:54] CVMFS is ok
[2025-11-24 14:32:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:32:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 14:32:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 14:32:54] Further information can be found at the LHC@home message board.
[2025-11-24 14:32:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:32:54] Checking for apptainer binary...
[2025-11-24 14:32:54] apptainer is not installed, using version from CVMFS
[2025-11-24 14:32:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:32:55] Debian-bookworm-latest-amd64-base
[2025-11-24 14:32:55] apptainer works
[2025-11-24 14:32:55] Set ATHENA_PROC_NUMBER=12
[2025-11-24 14:32:55] Set ATHENA_CORE_NUMBER=12
[2025-11-24 14:32:55] Starting ATLAS job with PandaID=6895362316
[2025-11-24 14:32:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 18:44:35]  *** The last 200 lines of the pilot log: ***
[2025-11-24 18:44:35] 2025-11-24 17:43:35,636 | INFO     | monitor loop #1123: job 0:6895362316 is in state 'finished'
[2025-11-24 18:44:35] 2025-11-24 17:43:35,636 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,502 | INFO     | time since job start (15032s) is within the limit (172800.0s)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,777 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 18:44:35] 2025-11-24 17:43:36,779 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3870.70825
[2025-11-24 18:44:35] 2025-11-24 17:43:36,780 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6895362316/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,781 | INFO     | extracted standard info from prmon json
[2025-11-24 18:44:35] 2025-11-24 17:43:36,781 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 18:44:35] 2025-11-24 17:43:36,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 18:44:35] 2025-11-24 17:43:36,783 | INFO     | fitting pss+swap vs Time
[2025-11-24 18:44:35] 2025-11-24 17:43:36,783 | INFO     | sum of square deviations: 4672609437.2064495
[2025-11-24 18:44:35] 2025-11-24 17:43:36,784 | INFO     | sum of deviations: 163375702931.23898
[2025-11-24 18:44:35] 2025-11-24 17:43:36,784 | INFO     | mean x: 1763998706.0566802
[2025-11-24 18:44:35] 2025-11-24 17:43:36,784 | INFO     | mean y: 3603214.340080972
[2025-11-24 18:44:35] 2025-11-24 17:43:36,784 | INFO     | intersect: -61673824022.99931
[2025-11-24 18:44:35] 2025-11-24 17:43:36,784 | INFO     | chi2: 4.648154535699723
[2025-11-24 18:44:35] 2025-11-24 17:43:36,784 | INFO     | sum of square deviations: 4394552679.6901
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | sum of deviations: 251573247392.5869
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | mean x: 1763998553.5578513
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | mean y: 3651353.743801653
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | intersect: -100979287493.55417
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | chi2: 1.8711789860538892
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | current chi2=1.8711789860538892 (change=59.74361498348492 %)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,785 | INFO     | sum of square deviations: 4127751947.173
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | sum of deviations: 241805133745.20685
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | mean x: 1763998401.0590718
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | mean y: 3645757.4852320673
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | intersect: -103331989414.71782
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | chi2: 1.8670209764322803
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | current chi2=1.8670209764322803 (change=0.22221335599635683 %)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,786 | INFO     | right removable region: 236
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | sum of square deviations: 4394544139.6901
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | sum of deviations: 91205880950.28912
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | mean x: 1763998858.5578513
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | mean y: 3642536.479338843
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | intersect: -36606996650.64211
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | chi2: 2.8757619216236963
[2025-11-24 18:44:35] 2025-11-24 17:43:36,787 | INFO     | current chi2=2.8757619216236963 (change=38.131103440372485 %)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,788 | INFO     | sum of square deviations: 4127734867.173
[2025-11-24 18:44:35] 2025-11-24 17:43:36,788 | INFO     | sum of deviations: 76050637599.32912
[2025-11-24 18:44:35] 2025-11-24 17:43:36,788 | INFO     | mean x: 1763999011.0590718
[2025-11-24 18:44:35] 2025-11-24 17:43:36,788 | INFO     | mean y: 3651182.405063291
[2025-11-24 18:44:35] 2025-11-24 17:43:36,788 | INFO     | intersect: -32496800962.06787
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | chi2: 2.8608730487205967
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | current chi2=2.8608730487205967 (change=0.5177366315043606 %)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | left removable region: 20
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | sum of square deviations: 3124822033.092595
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | sum of deviations: 132613161719.19444
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | mean x: 1763998980.5648148
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | mean y: 3710320.736111111
[2025-11-24 18:44:35] 2025-11-24 17:43:36,789 | INFO     | intersect: -74857987275.08473
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | chi2: 0.020604581875308087
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | current memory leak: 42.44 B/s (using 216 data points, chi2=0.02)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | could have reported an average CPU frequency of 3868 MHz (12 samples)
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | ..............................
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . Timing measurements:
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . get job = 0 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . initial setup = 1 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . payload setup = 3 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . stage-in = 0 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . payload execution = 15008 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . stage-out = 1 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | . log creation = 0 s
[2025-11-24 18:44:35] 2025-11-24 17:43:36,790 | INFO     | ..............................
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | 
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | job summary report
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | --------------------------------------------------
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | PanDA job id: 6895362316
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | task id: 47556137
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | errors: (none)
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | pilot state: finished 
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | transexitcode: 0
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | exeerrorcode: 0
[2025-11-24 18:44:35] 2025-11-24 17:43:37,003 | INFO     | exeerrordiag: 
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | exitcode: 0
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | exitmsg: OK
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | cpuconsumptiontime: 173546 s
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | nevents: 1000
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | neventsw: 0
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | pid: 568750
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | pgrp: 568750
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | corecount: 12
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | event service: False
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | sizes: {0: 2284317, 3: 2284579, 11: 2284607, 15015: 2316752, 15017: 2325816, 15019: 2326006}
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | --------------------------------------------------
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | 
[2025-11-24 18:44:35] 2025-11-24 17:43:37,004 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-11-24 18:44:35] 2025-11-24 17:43:37,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,018 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,018 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,018 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,018 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | job 6895362316 has completed (purged errors)
[2025-11-24 18:44:35] 2025-11-24 17:43:37,019 | INFO     | overall cleanup function is called
[2025-11-24 18:44:35] 2025-11-24 17:43:38,033 | INFO     | --- collectZombieJob: --- 10, [568750]
[2025-11-24 18:44:35] 2025-11-24 17:43:38,034 | INFO     | zombie collector waiting for pid 568750
[2025-11-24 18:44:35] 2025-11-24 17:43:38,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 18:44:35] 2025-11-24 17:43:38,034 | INFO     | collected zombie processes
[2025-11-24 18:44:35] 2025-11-24 17:43:38,034 | INFO     | will attempt to kill all subprocesses of pid=568750
[2025-11-24 18:44:35] 2025-11-24 17:43:38,072 | INFO     | process IDs to be killed: [568750] (in reverse order)
[2025-11-24 18:44:35] 2025-11-24 17:43:38,094 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 18:44:35] 2025-11-24 17:43:38,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 18:44:35] 2025-11-24 17:43:38,095 | INFO     | did not find any defunct processes belonging to 568750
[2025-11-24 18:44:35] 2025-11-24 17:43:38,096 | INFO     | did not find any defunct processes belonging to 568750
[2025-11-24 18:44:35] 2025-11-24 17:43:38,097 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 18:44:35] 2025-11-24 17:43:38,097 | INFO     | ready for new job
[2025-11-24 18:44:35] 2025-11-24 17:43:38,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 18:44:35] 2025-11-24 17:43:38,098 | INFO     | ***************************************
[2025-11-24 18:44:35] 2025-11-24 17:43:38,098 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 18:44:35] 2025-11-24 17:43:38,098 | INFO     | ***************************************
[2025-11-24 18:44:35] 2025-11-24 17:43:38,098 | INFO     | 
[2025-11-24 18:44:35] 2025-11-24 17:43:38,099 | INFO     | architecture information:
[2025-11-24 18:44:35] 2025-11-24 17:43:38,099 | INFO     | executing command: cat /etc/os-release
[2025-11-24 18:44:35] 2025-11-24 17:43:38,108 | INFO     | cat /etc/os-release:
[2025-11-24 18:44:35] NAME="CentOS Linux"
[2025-11-24 18:44:35] VERSION="7 (Core)"
[2025-11-24 18:44:35] ID="centos"
[2025-11-24 18:44:35] ID_LIKE="rhel fedora"
[2025-11-24 18:44:35] VERSION_ID="7"
[2025-11-24 18:44:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 18:44:35] ANSI_COLOR="0;31"
[2025-11-24 18:44:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 18:44:35] HOME_URL="https://www.centos.org/"
[2025-11-24 18:44:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 18:44:35] 
[2025-11-24 18:44:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 18:44:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 18:44:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 18:44:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 18:44:35] 
[2025-11-24 18:44:35] 2025-11-24 17:43:38,108 | INFO     | ***************************************
[2025-11-24 18:44:35] 2025-11-24 17:43:38,611 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-11-24 18:44:35] 2025-11-24 17:43:38,624 | INFO     | sufficient remaining disk space (747539267584 B)
[2025-11-24 18:44:35] 2025-11-24 17:43:38,625 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 18:44:35] 2025-11-24 17:43:38,625 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 18:44:35] 2025-11-24 17:43:38,625 | INFO     | update_server=False
[2025-11-24 18:44:35] 2025-11-24 17:43:38,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 18:44:35] 2025-11-24 17:43:38,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:44:35] 2025-11-24 17:43:38,934 | INFO     | all data control threads have been joined
[2025-11-24 18:44:35] 2025-11-24 17:43:39,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 18:44:35] 2025-11-24 17:43:39,143 | INFO     | aborting loop
[2025-11-24 18:44:35] 2025-11-24 17:43:39,167 | INFO     | all payload control threads have been joined
[2025-11-24 18:44:35] 2025-11-24 17:43:39,630 | INFO     | [job] retrieve thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:39,630 | INFO     | [job] queue monitor thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:39,661 | INFO     | all job control threads have been joined
[2025-11-24 18:44:35] 2025-11-24 17:43:39,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 18:44:35] 2025-11-24 17:43:39,901 | INFO     | [payload] validate_post thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:39,939 | INFO     | [data] control thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,148 | INFO     | [job] job monitor thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,161 | INFO     | [payload] failed_post thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,169 | INFO     | [payload] control thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 18:44:35] 2025-11-24 17:43:40,334 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,666 | INFO     | [job] control thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,945 | INFO     | [job] validate thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,959 | INFO     | [data] copytool_in thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:40,961 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:41,125 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:41,669 | INFO     | [data] copytool_out thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:44,238 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:43:49,356 | INFO     | job.realtimelogging is not enabled
[2025-11-24 18:44:35] 2025-11-24 17:43:50,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 18:44:35] 2025-11-24 17:44:09,621 | INFO     | PID=561966 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 18:44:35] 2025-11-24 17:44:09,635 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 18:44:35] 2025-11-24 17:44:09,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 18:44:35] 2025-11-24 17:44:09,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 18:44:35] 2025-11-24 17:44:29,407 | INFO     | [monitor] cgroup control has ended
[2025-11-24 18:44:35] 2025-11-24 17:44:29,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640878012224)>', '<ExcThread(monitor, started 139640476505856)>']
[2025-11-24 18:44:35] 2025-11-24 17:44:30,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 18:44:35] 2025-11-24 17:44:30,680 | INFO     | [monitor] control thread has ended
[2025-11-24 18:44:35] 2025-11-24 17:44:34,983 | INFO     | all workflow threads have been joined
[2025-11-24 18:44:35] 2025-11-24 17:44:34,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 18:44:35] 2025-11-24 17:44:34,984 | INFO     | traces error code: 0
[2025-11-24 18:44:35] 2025-11-24 17:44:34,984 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 18:44:35] 2025-11-24 17:44:35,054 [wrapper] ==== pilot stdout END ====
[2025-11-24 18:44:35] 2025-11-24 17:44:35,055 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 18:44:35] 2025-11-24 17:44:35,057 [wrapper] pilotpid: 561966
[2025-11-24 18:44:35] 2025-11-24 17:44:35,058 [wrapper] Pilot exit status: 0
[2025-11-24 18:44:35] 2025-11-24 17:44:35,063 [wrapper] pandaids: 6895362316
[2025-11-24 18:44:35] 2025-11-24 17:44:35,076 [wrapper] cleanup supervisor_pilot  598995 561967
[2025-11-24 18:44:35] 2025-11-24 17:44:35,077 [wrapper] Test setup, not cleaning
[2025-11-24 18:44:35] 2025-11-24 17:44:35,078 [wrapper] apfmon messages muted
[2025-11-24 18:44:35] 2025-11-24 17:44:35,079 [wrapper] ==== wrapper stdout END ====
[2025-11-24 18:44:35] 2025-11-24 17:44:35,080 [wrapper] ==== wrapper stderr END ====
[2025-11-24 18:44:35]  *** Error codes and diagnostics ***
[2025-11-24 18:44:35]     "exeErrorCode": 0,
[2025-11-24 18:44:35]     "exeErrorDiag": "",
[2025-11-24 18:44:35]     "pilotErrorCode": 0,
[2025-11-24 18:44:35]     "pilotErrorDiag": "",
[2025-11-24 18:44:35]  *** Listing of results directory ***
[2025-11-24 18:44:35] total 1326856
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc    576529 Nov 23 15:56 pilot3.tar.gz
[2025-11-24 18:44:35] -rwx------ 1 boinc boinc     36292 Nov 23 16:03 runpilot2-wrapper.sh
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc      5112 Nov 23 16:03 queuedata.json
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc       100 Nov 24 14:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 18:44:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 14:32 run_atlas
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc       105 Nov 24 14:32 job.xml
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc      6729 Nov 24 14:32 init_data.xml
[2025-11-24 18:44:35] -rw-r--r-- 2 boinc boinc 413450033 Nov 24 14:32 EVNT.47483658._000783.pool.root.1
[2025-11-24 18:44:35] -rw-r--r-- 2 boinc boinc     15847 Nov 24 14:32 start_atlas.sh
[2025-11-24 18:44:35] drwxrwx--x 2 boinc boinc      4096 Nov 24 14:32 shared
[2025-11-24 18:44:35] -rw-r--r-- 2 boinc boinc    590100 Nov 24 14:32 input.tar.gz
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc         0 Nov 24 14:32 boinc_lockfile
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc      2786 Nov 24 14:32 pandaJob.out
[2025-11-24 18:44:35] -rw------- 1 boinc boinc    988280 Nov 24 14:33 agis_schedconf.cvmfs.json
[2025-11-24 18:44:35] drwx------ 5 boinc boinc      4096 Nov 24 14:33 pilot3
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc       533 Nov 24 18:38 boinc_task_state.xml
[2025-11-24 18:44:35] -rw------- 1 boinc boinc 933104432 Nov 24 18:43 HITS.47556137._007715.pool.root.1
[2025-11-24 18:44:35] -rw------- 1 boinc boinc      1027 Nov 24 18:43 memory_monitor_summary.json
[2025-11-24 18:44:35] -rw------- 1 boinc boinc   1516227 Nov 24 18:43 agis_ddmendpoints.agis.ALL.json
[2025-11-24 18:44:35] -rw------- 1 boinc boinc   1974806 Nov 24 18:43 log.47556137._007715.job.log.tgz.1
[2025-11-24 18:44:35] -rw------- 1 boinc boinc      8615 Nov 24 18:43 heartbeat.json
[2025-11-24 18:44:35] -rw------- 1 boinc boinc        95 Nov 24 18:44 pilot_heartbeat.json
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc      8192 Nov 24 18:44 boinc_mmap_file
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc        29 Nov 24 18:44 wrapper_checkpoint.txt
[2025-11-24 18:44:35] -rw------- 1 boinc boinc      4827 Nov 24 18:44 pilotlog.txt
[2025-11-24 18:44:35] -rw------- 1 boinc boinc   2140650 Nov 24 18:44 log.47556137._007715.job.log.1
[2025-11-24 18:44:35] -rw------- 1 boinc boinc       353 Nov 24 18:44 output.list
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc       620 Nov 24 18:44 runtime_log
[2025-11-24 18:44:35] -rw------- 1 boinc boinc   4136960 Nov 24 18:44 result.tar.gz
[2025-11-24 18:44:35] -rw------- 1 boinc boinc       714 Nov 24 18:44 SgdMDmsnQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIbIKDmodxPbn.diag
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc      9133 Nov 24 18:44 runtime_log.err
[2025-11-24 18:44:35] -rw-r--r-- 1 boinc boinc     21392 Nov 24 18:44 stderr.txt
[2025-11-24 18:44:35] HITS file was successfully produced:
[2025-11-24 18:44:35] -rw------- 1 boinc boinc 933104432 Nov 24 18:43 shared/HITS.pool.root.1
[2025-11-24 18:44:35]  *** Contents of shared directory: ***
[2025-11-24 18:44:35] total 1319640
[2025-11-24 18:44:35] -rw-r--r-- 2 boinc boinc 413450033 Nov 24 14:32 ATLAS.root_0
[2025-11-24 18:44:35] -rw-r--r-- 2 boinc boinc     15847 Nov 24 14:32 start_atlas.sh
[2025-11-24 18:44:35] -rw-r--r-- 2 boinc boinc    590100 Nov 24 14:32 input.tar.gz
[2025-11-24 18:44:35] -rw------- 1 boinc boinc 933104432 Nov 24 18:43 HITS.pool.root.1
[2025-11-24 18:44:35] -rw------- 1 boinc boinc   4136960 Nov 24 18:44 result.tar.gz
18:44:36 (557559): run_atlas exited; CPU time 173403.321321
18:44:36 (557559): called boinc_finish(0)

</stderr_txt>
]]>

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