Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:02:33 (28215): wrapper (7.7.26015): starting
06:02:33 (28215): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 06:02:33] Arguments: --nthreads 8
[2025-11-24 06:02:33] Threads: 8
[2025-11-24 06:02:33] Checking for CVMFS
[2025-11-24 06:02:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 06:02:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 06:02:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 06:02:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 06:02:33] 2.11.2.0 6956 114691 136380 153242 2 90 12699989 18432001 1692 130560 0 83705839 99.973 4905443 30926 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 06:02:33] CVMFS is ok
[2025-11-24 06:02:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 06:02:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 06:02:33] Further information can be found at the LHC@home message board.
[2025-11-24 06:02:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 06:02:33] Checking for apptainer binary...
[2025-11-24 06:02:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 06:02:33] Running /usr/bin/apptainer --version
[2025-11-24 06:02:34] apptainer version 1.3.2-1.el7
[2025-11-24 06:02:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 06:02:34] c-206-16.aglt2.org
[2025-11-24 06:02:34] apptainer works
[2025-11-24 06:02:34] Set ATHENA_PROC_NUMBER=8
[2025-11-24 06:02:34] Set ATHENA_CORE_NUMBER=8
[2025-11-24 06:02:34] Starting ATLAS job with PandaID=6895362278
[2025-11-24 06:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:03:03]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:03:03] 2025-11-25 06:02:29,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,077 | INFO     | time since job start (68386s) is within the limit (172800.0s)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,819 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 01:03:03] 2025-11-25 06:02:30,825 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1806.75
[2025-11-25 01:03:03] 2025-11-25 06:02:30,829 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895362278/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,830 | INFO     | extracted standard info from prmon json
[2025-11-25 01:03:03] 2025-11-25 06:02:30,830 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:03:03] 2025-11-25 06:02:30,830 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:03:03] 2025-11-25 06:02:30,846 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:03:03] 2025-11-25 06:02:30,848 | INFO     | sum of square deviations: 436812447336.75854
[2025-11-25 01:03:03] 2025-11-25 06:02:30,870 | INFO     | sum of deviations: 2299381646520.87
[2025-11-25 01:03:03] 2025-11-25 06:02:30,870 | INFO     | mean x: 1764016349.601249
[2025-11-25 01:03:03] 2025-11-25 06:02:30,870 | INFO     | mean y: 2860565.666369313
[2025-11-25 01:03:03] 2025-11-25 06:02:30,870 | INFO     | intersect: -9282925229.052038
[2025-11-25 01:03:03] 2025-11-25 06:02:30,871 | INFO     | chi2: 4.874057591412266
[2025-11-25 01:03:03] 2025-11-25 06:02:30,872 | INFO     | sum of square deviations: 430993734499.94257
[2025-11-25 01:03:03] 2025-11-25 06:02:30,894 | INFO     | sum of deviations: 2593702344305.8735
[2025-11-25 01:03:03] 2025-11-25 06:02:30,895 | INFO     | mean x: 1764016197.1039426
[2025-11-25 01:03:03] 2025-11-25 06:02:30,895 | INFO     | mean y: 2868274.4838709678
[2025-11-25 01:03:03] 2025-11-25 06:02:30,895 | INFO     | intersect: -10612907732.400602
[2025-11-25 01:03:03] 2025-11-25 06:02:30,896 | INFO     | chi2: 2.6978850554639844
[2025-11-25 01:03:03] 2025-11-25 06:02:30,896 | INFO     | current chi2=2.6978850554639844 (change=44.64806775739661 %)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,897 | INFO     | sum of square deviations: 425226929613.1107
[2025-11-25 01:03:03] 2025-11-25 06:02:30,918 | INFO     | sum of deviations: 2631649780061.9756
[2025-11-25 01:03:03] 2025-11-25 06:02:30,918 | INFO     | mean x: 1764016044.6066606
[2025-11-25 01:03:03] 2025-11-25 06:02:30,918 | INFO     | mean y: 2869274.4896489647
[2025-11-25 01:03:03] 2025-11-25 06:02:30,918 | INFO     | intersect: -10914295449.858004
[2025-11-25 01:03:03] 2025-11-25 06:02:30,919 | INFO     | chi2: 2.547460160931666
[2025-11-25 01:03:03] 2025-11-25 06:02:30,919 | INFO     | current chi2=2.547460160931666 (change=5.575659875785492 %)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,920 | INFO     | right removable region: 1110
[2025-11-25 01:03:03] 2025-11-25 06:02:30,920 | INFO     | sum of square deviations: 430993323359.94257
[2025-11-25 01:03:03] 2025-11-25 06:02:30,942 | INFO     | sum of deviations: 1998885509221.7258
[2025-11-25 01:03:03] 2025-11-25 06:02:30,942 | INFO     | mean x: 1764016502.1039426
[2025-11-25 01:03:03] 2025-11-25 06:02:30,942 | INFO     | mean y: 2868432.2437275983
[2025-11-25 01:03:03] 2025-11-25 06:02:30,942 | INFO     | intersect: -8178388290.238687
[2025-11-25 01:03:03] 2025-11-25 06:02:30,943 | INFO     | chi2: 2.729075116447074
[2025-11-25 01:03:03] 2025-11-25 06:02:30,943 | INFO     | current chi2=2.729075116447074 (change=44.00814792883233 %)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,944 | INFO     | sum of square deviations: 425226243241.53394
[2025-11-25 01:03:03] 2025-11-25 06:02:30,965 | INFO     | sum of deviations: 1902378068726.055
[2025-11-25 01:03:03] 2025-11-25 06:02:30,965 | INFO     | mean x: 1764016654.6048605
[2025-11-25 01:03:03] 2025-11-25 06:02:30,965 | INFO     | mean y: 2870984.0639063907
[2025-11-25 01:03:03] 2025-11-25 06:02:30,965 | INFO     | intersect: -7888990465.986904
[2025-11-25 01:03:03] 2025-11-25 06:02:30,966 | INFO     | chi2: 2.6195775461308624
[2025-11-25 01:03:03] 2025-11-25 06:02:30,966 | INFO     | current chi2=2.6195775461308624 (change=4.012259305590839 %)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,966 | INFO     | left removable region: 20
[2025-11-25 01:03:03] 2025-11-25 06:02:30,967 | INFO     | sum of square deviations: 401566829503.56744
[2025-11-25 01:03:03] 2025-11-25 06:02:30,987 | INFO     | sum of deviations: 2090494944085.7043
[2025-11-25 01:03:03] 2025-11-25 06:02:30,987 | INFO     | mean x: 1764016624.1110091
[2025-11-25 01:03:03] 2025-11-25 06:02:30,987 | INFO     | mean y: 2883595.3412844036
[2025-11-25 01:03:03] 2025-11-25 06:02:30,988 | INFO     | intersect: -9180314724.465248
[2025-11-25 01:03:03] 2025-11-25 06:02:30,988 | INFO     | chi2: 0.20211937993769116
[2025-11-25 01:03:03] 2025-11-25 06:02:30,989 | INFO     | current memory leak: 5.21 B/s (using 1090 data points, chi2=0.20)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,989 | INFO     | could have reported an average CPU frequency of 2612 MHz (41 samples)
[2025-11-25 01:03:03] 2025-11-25 06:02:30,989 | INFO     | ..............................
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . Timing measurements:
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . get job = 0 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . initial setup = 2 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . payload setup = 5 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . stage-in = 0 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . payload execution = 68353 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . stage-out = 3 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | . log creation = 0 s
[2025-11-25 01:03:03] 2025-11-25 06:02:30,990 | INFO     | ..............................
[2025-11-25 01:03:03] 2025-11-25 06:02:31,066 | INFO     | 
[2025-11-25 01:03:03] 2025-11-25 06:02:31,066 | INFO     | job summary report
[2025-11-25 01:03:03] 2025-11-25 06:02:31,066 | INFO     | --------------------------------------------------
[2025-11-25 01:03:03] 2025-11-25 06:02:31,066 | INFO     | PanDA job id: 6895362278
[2025-11-25 01:03:03] 2025-11-25 06:02:31,066 | INFO     | task id: 47556137
[2025-11-25 01:03:03] 2025-11-25 06:02:31,066 | INFO     | errors: (none)
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | pilot state: finished 
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | transexitcode: 0
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | exeerrorcode: 0
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | exeerrordiag: 
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | exitcode: 0
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | exitmsg: OK
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | cpuconsumptiontime: 526523 s
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | nevents: 1000
[2025-11-25 01:03:03] 2025-11-25 06:02:31,067 | INFO     | neventsw: 0
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | pid: 6103
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | pgrp: 6103
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | corecount: 8
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | event service: False
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | sizes: {0: 2298807, 1: 2298807, 4: 2299097, 11: 2299125, 68362: 2354958, 68365: 2364927, 68371: 2365213}
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | --------------------------------------------------
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | 
[2025-11-25 01:03:03] 2025-11-25 06:02:31,068 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 01:03:03] 2025-11-25 06:02:31,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,085 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,085 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,087 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:03:03] 2025-11-25 06:02:31,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,087 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:03:03] 2025-11-25 06:02:31,087 | INFO     | job 6895362278 has completed (purged errors)
[2025-11-25 01:03:03] 2025-11-25 06:02:31,087 | INFO     | overall cleanup function is called
[2025-11-25 01:03:03] 2025-11-25 06:02:32,100 | INFO     | --- collectZombieJob: --- 10, [6103]
[2025-11-25 01:03:03] 2025-11-25 06:02:32,100 | INFO     | zombie collector waiting for pid 6103
[2025-11-25 01:03:03] 2025-11-25 06:02:32,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:03:03] 2025-11-25 06:02:32,100 | INFO     | collected zombie processes
[2025-11-25 01:03:03] 2025-11-25 06:02:32,100 | INFO     | will attempt to kill all subprocesses of pid=6103
[2025-11-25 01:03:03] 2025-11-25 06:02:32,267 | INFO     | process IDs to be killed: [6103] (in reverse order)
[2025-11-25 01:03:03] 2025-11-25 06:02:32,319 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:03:03] 2025-11-25 06:02:32,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:03:03] 2025-11-25 06:02:32,325 | INFO     | did not find any defunct processes belonging to 6103
[2025-11-25 01:03:03] 2025-11-25 06:02:32,330 | INFO     | did not find any defunct processes belonging to 6103
[2025-11-25 01:03:03] 2025-11-25 06:02:32,332 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:03:03] 2025-11-25 06:02:32,333 | INFO     | ready for new job
[2025-11-25 01:03:03] 2025-11-25 06:02:32,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:03:03] 2025-11-25 06:02:32,338 | INFO     | ***************************************
[2025-11-25 01:03:03] 2025-11-25 06:02:32,338 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:03:03] 2025-11-25 06:02:32,338 | INFO     | ***************************************
[2025-11-25 01:03:03] 2025-11-25 06:02:32,338 | INFO     | 
[2025-11-25 01:03:03] 2025-11-25 06:02:32,339 | INFO     | architecture information:
[2025-11-25 01:03:03] 2025-11-25 06:02:32,340 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:03:03] 2025-11-25 06:02:32,353 | INFO     | cat /etc/os-release:
[2025-11-25 01:03:03] NAME="CentOS Linux"
[2025-11-25 01:03:03] VERSION="7 (Core)"
[2025-11-25 01:03:03] ID="centos"
[2025-11-25 01:03:03] ID_LIKE="rhel fedora"
[2025-11-25 01:03:03] VERSION_ID="7"
[2025-11-25 01:03:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:03:03] ANSI_COLOR="0;31"
[2025-11-25 01:03:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:03:03] HOME_URL="https://www.centos.org/"
[2025-11-25 01:03:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:03:03] 
[2025-11-25 01:03:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:03:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:03:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:03:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:03:03] 
[2025-11-25 01:03:03] 2025-11-25 06:02:32,353 | INFO     | ***************************************
[2025-11-25 01:03:03] 2025-11-25 06:02:32,856 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 01:03:03] 2025-11-25 06:02:32,871 | INFO     | sufficient remaining disk space (25779240960 B)
[2025-11-25 01:03:03] 2025-11-25 06:02:32,872 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:03:03] 2025-11-25 06:02:32,872 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:03:03] 2025-11-25 06:02:32,872 | INFO     | update_server=False
[2025-11-25 01:03:03] 2025-11-25 06:02:32,872 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:03:03] 2025-11-25 06:02:32,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:03:03] 2025-11-25 06:02:32,965 | INFO     | all data control threads have been joined
[2025-11-25 01:03:03] 2025-11-25 06:02:33,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:03:03] 2025-11-25 06:02:33,065 | INFO     | aborting loop
[2025-11-25 01:03:03] 2025-11-25 06:02:33,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:03:03] 2025-11-25 06:02:33,619 | INFO     | all payload control threads have been joined
[2025-11-25 01:03:03] 2025-11-25 06:02:33,812 | INFO     | all job control threads have been joined
[2025-11-25 01:03:03] 2025-11-25 06:02:33,874 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:33,878 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:33,933 | INFO     | [job] validate thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:33,971 | INFO     | [data] control thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,012 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,017 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,033 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,071 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,081 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,624 | INFO     | [payload] control thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,641 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,722 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,815 | INFO     | [job] control thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:34,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:35,071 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:35,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:03:03] 2025-11-25 06:02:38,033 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:03:03] 2025-11-25 06:02:39,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:03:03] 2025-11-25 06:02:41,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140168870487872)>', '<ExcThread(monitor, started 140168430331648)>']
[2025-11-25 01:03:03] 2025-11-25 06:02:46,420 | INFO     | all workflow threads have been joined
[2025-11-25 01:03:03] 2025-11-25 06:02:46,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:03:03] 2025-11-25 06:02:46,420 | INFO     | traces error code: 0
[2025-11-25 01:03:03] 2025-11-25 06:02:46,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:03:03] 2025-11-25 06:02:48,796 [wrapper] supervise_pilot (15 min periods counter: 77)
[2025-11-25 01:03:03] 2025-11-25 06:03:03,287 | INFO     | PID=31919 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:03:03] 2025-11-25 06:03:03,288 | INFO     | .. there are 3 such processes running
[2025-11-25 01:03:03] 2025-11-25 06:03:03,288 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:03:03] 2025-11-25 06:03:03,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:03:03] 2025-11-25 06:03:03,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:03:03] 2025-11-25 06:03:03,289 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:03:03] 2025-11-25 06:03:03,289 | INFO     | [monitor] control thread has ended
[2025-11-25 01:03:03] 2025-11-25 06:03:03,365 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:03:03] 2025-11-25 06:03:03,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:03:03] 2025-11-25 06:03:03,370 [wrapper] pilotpid: 31919
[2025-11-25 01:03:03] 2025-11-25 06:03:03,372 [wrapper] Pilot exit status: 0
[2025-11-25 01:03:03] 2025-11-25 06:03:03,381 [wrapper] pandaids: 6895362278
[2025-11-25 01:03:03] 2025-11-25 06:03:03,415 [wrapper] cleanup supervisor_pilot 14559 31920
[2025-11-25 01:03:03] 2025-11-25 06:03:03,418 [wrapper] Test setup, not cleaning
[2025-11-25 01:03:03] 2025-11-25 06:03:03,421 [wrapper] apfmon messages muted
[2025-11-25 01:03:03] 2025-11-25 06:03:03,424 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:03:03] 2025-11-25 06:03:03,428 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:03:03]  *** Error codes and diagnostics ***
[2025-11-25 01:03:03]     "exeErrorCode": 0,
[2025-11-25 01:03:03]     "exeErrorDiag": "",
[2025-11-25 01:03:03]     "pilotErrorCode": 0,
[2025-11-25 01:03:03]     "pilotErrorDiag": "",
[2025-11-25 01:03:03]  *** Listing of results directory ***
[2025-11-25 01:03:03] total 1310020
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 09:56 pilot3.tar.gz
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 10:00 queuedata.json
[2025-11-25 01:03:03] -rwx------ 1 boincer umatlas     36292 Nov 23 10:01 runpilot2-wrapper.sh
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas       100 Nov 24 06:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:03:03] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 06:02 run_atlas
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas       105 Nov 24 06:02 job.xml
[2025-11-25 01:03:03] -rw-r--r-- 2 boincer umatlas 408617745 Nov 24 06:02 EVNT.47483658._000772.pool.root.1
[2025-11-25 01:03:03] drwxrwx--x 2 boincer umatlas      4096 Nov 24 06:02 shared
[2025-11-25 01:03:03] -rw-r--r-- 2 boincer umatlas    590101 Nov 24 06:02 input.tar.gz
[2025-11-25 01:03:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 06:02 start_atlas.sh
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas         0 Nov 24 06:02 boinc_lockfile
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas      2786 Nov 24 06:02 pandaJob.out
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas        57 Nov 24 06:02 setup.sh.local
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas    989824 Nov 24 06:02 agis_schedconf.cvmfs.json
[2025-11-25 01:03:03] drwx------ 5 boincer umatlas      4096 Nov 24 06:02 pilot3
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas       532 Nov 25 00:54 boinc_task_state.xml
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas      5952 Nov 25 01:01 init_data.xml
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas 905396634 Nov 25 01:01 HITS.47556137._007677.pool.root.1
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas      1065 Nov 25 01:02 memory_monitor_summary.json
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas   1516227 Nov 25 01:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas   2289232 Nov 25 01:02 log.47556137._007677.job.log.tgz.1
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas      8650 Nov 25 01:02 heartbeat.json
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 01:02 boinc_mmap_file
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas        29 Nov 25 01:02 wrapper_checkpoint.txt
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas       820 Nov 25 01:03 pilotlog.txt
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas        95 Nov 25 01:03 pilot_heartbeat.json
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas   9472237 Nov 25 01:03 log.47556137._007677.job.log.1
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas       353 Nov 25 01:03 output.list
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas       620 Nov 25 01:03 runtime_log
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas  11786240 Nov 25 01:03 result.tar.gz
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas       668 Nov 25 01:03 UNGNDmslQh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXzKKDmhXGSkm.diag
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 01:03 runtime_log.err
[2025-11-25 01:03:03] -rw-r--r-- 1 boincer umatlas     21261 Nov 25 01:03 stderr.txt
[2025-11-25 01:03:03] HITS file was successfully produced:
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas 905396634 Nov 25 01:01 shared/HITS.pool.root.1
[2025-11-25 01:03:03]  *** Contents of shared directory: ***
[2025-11-25 01:03:03] total 1295340
[2025-11-25 01:03:03] -rw-r--r-- 2 boincer umatlas 408617745 Nov 24 06:02 ATLAS.root_0
[2025-11-25 01:03:03] -rw-r--r-- 2 boincer umatlas    590101 Nov 24 06:02 input.tar.gz
[2025-11-25 01:03:03] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 06:02 start_atlas.sh
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas 905396634 Nov 25 01:01 HITS.pool.root.1
[2025-11-25 01:03:03] -rw------- 1 boincer umatlas  11786240 Nov 25 01:03 result.tar.gz
01:03:05 (28215): run_atlas exited; CPU time 525268.991514
01:03:05 (28215): called boinc_finish(0)

</stderr_txt>
]]>

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