Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:01:21 (15277): wrapper (7.7.26015): starting
22:01:21 (15277): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 22:01:21] Arguments: --nthreads 8
[2025-11-26 22:01:21] Threads: 8
[2025-11-26 22:01:21] Checking for CVMFS
[2025-11-26 22:01:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:01:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:01:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:01:24] 2.11.2.0 17642 285717 138696 153334 1 85 20286544 25165825 1288 130560 12 137537618 99.869 85776582 2931 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 22:01:24] CVMFS is ok
[2025-11-26 22:01:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:01:24] Checking for apptainer binary...
[2025-11-26 22:01:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:01:24] Running /usr/bin/apptainer --version
[2025-11-26 22:01:25] apptainer version 1.3.2-1.el7
[2025-11-26 22:01:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:01:49] cg-vwn307.simple-grid.lan
[2025-11-26 22:01:49] apptainer works
[2025-11-26 22:01:49] Set ATHENA_PROC_NUMBER=8
[2025-11-26 22:01:49] Set ATHENA_CORE_NUMBER=8
[2025-11-26 22:01:49] Starting ATLAS job with PandaID=6893836266
[2025-11-26 22:01:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:41:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:41:38] 2025-11-27 20:40:15,750 | INFO     | time since job start (84856s) is within the limit (172800.0s)
[2025-11-27 21:41:38] 2025-11-27 20:40:16,961 | INFO     | PID=19097 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:41:38] 2025-11-27 20:40:16,961 | INFO     | .. there are 9 such processes running
[2025-11-27 21:41:38] 2025-11-27 20:40:17,884 | INFO     | monitor loop #5700: job 0:6893836266 is in state 'finished'
[2025-11-27 21:41:38] 2025-11-27 20:40:17,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:41:38] 2025-11-27 20:40:17,963 | INFO     | time since job start (84858s) is within the limit (172800.0s)
[2025-11-27 21:41:38] 2025-11-27 20:40:19,970 | INFO     | time since job start (84860s) is within the limit (172800.0s)
[2025-11-27 21:41:38] 2025-11-27 20:40:20,395 | INFO     | monitor loop #5701: job 0:6893836266 is in state 'finished'
[2025-11-27 21:41:38] 2025-11-27 20:40:20,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:41:38] 2025-11-27 20:40:21,977 | INFO     | time since job start (84862s) is within the limit (172800.0s)
[2025-11-27 21:41:38] 2025-11-27 20:40:22,899 | INFO     | monitor loop #5702: job 0:6893836266 is in state 'finished'
[2025-11-27 21:41:38] 2025-11-27 20:40:22,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:41:38] 2025-11-27 20:40:23,984 | INFO     | time since job start (84864s) is within the limit (172800.0s)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,388 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:41:38] 2025-11-27 20:40:25,389 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-27 21:41:38] 2025-11-27 20:40:25,391 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893836266/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,391 | INFO     | extracted standard info from prmon json
[2025-11-27 21:41:38] 2025-11-27 20:40:25,392 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:41:38] 2025-11-27 20:40:25,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:41:38] 2025-11-27 20:40:25,418 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:41:38] 2025-11-27 20:40:25,421 | INFO     | sum of square deviations: 818468594533.0596
[2025-11-27 21:41:38] 2025-11-27 20:40:25,437 | INFO     | monitor loop #5703: job 0:6893836266 is in state 'finished'
[2025-11-27 21:41:38] 2025-11-27 20:40:25,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,506 | INFO     | sum of deviations: 3173557484021.9824
[2025-11-27 21:41:38] 2025-11-27 20:40:25,506 | INFO     | mean x: 1764233802.5781476
[2025-11-27 21:41:38] 2025-11-27 20:40:25,506 | INFO     | mean y: 2851361.648335745
[2025-11-27 21:41:38] 2025-11-27 20:40:25,507 | INFO     | intersect: -6837847750.246899
[2025-11-27 21:41:38] 2025-11-27 20:40:25,508 | INFO     | chi2: 19.062187273779337
[2025-11-27 21:41:38] 2025-11-27 20:40:25,510 | INFO     | sum of square deviations: 809617617899.7274
[2025-11-27 21:41:38] 2025-11-27 20:40:25,574 | INFO     | sum of deviations: 3657674599684.6206
[2025-11-27 21:41:38] 2025-11-27 20:40:25,574 | INFO     | mean x: 1764233650.0820625
[2025-11-27 21:41:38] 2025-11-27 20:40:25,574 | INFO     | mean y: 2859700.7821350764
[2025-11-27 21:41:38] 2025-11-27 20:40:25,574 | INFO     | intersect: -7967560491.597201
[2025-11-27 21:41:38] 2025-11-27 20:40:25,576 | INFO     | chi2: 15.539679290477086
[2025-11-27 21:41:38] 2025-11-27 20:40:25,576 | INFO     | current chi2=15.539679290477086 (change=18.479033558481383 %)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,576 | INFO     | right removable region: 1376
[2025-11-27 21:41:38] 2025-11-27 20:40:25,578 | INFO     | sum of square deviations: 809616708999.7269
[2025-11-27 21:41:38] 2025-11-27 20:40:25,639 | INFO     | sum of deviations: 2603285643311.8936
[2025-11-27 21:41:38] 2025-11-27 20:40:25,640 | INFO     | mean x: 1764233955.0820625
[2025-11-27 21:41:38] 2025-11-27 20:40:25,640 | INFO     | mean y: 2861185.6027596225
[2025-11-27 21:41:38] 2025-11-27 20:40:25,640 | INFO     | intersect: -5669952722.083084
[2025-11-27 21:41:38] 2025-11-27 20:40:25,642 | INFO     | chi2: 14.558031082960342
[2025-11-27 21:41:38] 2025-11-27 20:40:25,642 | INFO     | current chi2=14.558031082960342 (change=23.62874798221403 %)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,642 | INFO     | left removable region: 10
[2025-11-27 21:41:38] 2025-11-27 20:40:25,644 | INFO     | sum of square deviations: 790368772006.2428
[2025-11-27 21:41:38] 2025-11-27 20:40:25,710 | INFO     | sum of deviations: 2714598544380.999
[2025-11-27 21:41:38] 2025-11-27 20:40:25,710 | INFO     | mean x: 1764233924.590776
[2025-11-27 21:41:38] 2025-11-27 20:40:25,710 | INFO     | mean y: 2879673.7459736457
[2025-11-27 21:41:38] 2025-11-27 20:40:25,710 | INFO     | intersect: -6056553610.143777
[2025-11-27 21:41:38] 2025-11-27 20:40:25,712 | INFO     | chi2: 7.203896197850501
[2025-11-27 21:41:38] 2025-11-27 20:40:25,712 | INFO     | current memory leak: 3.43 B/s (using 1366 data points, chi2=7.20)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,713 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | ..............................
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . Timing measurements:
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . get job = 0 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . initial setup = 11 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . payload setup = 152 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . stage-in = 0 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . payload execution = 84411 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,714 | INFO     | . stage-out = 5 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,715 | INFO     | . log creation = 2 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,715 | INFO     | ..............................
[2025-11-27 21:41:38] 2025-11-27 20:40:25,971 | INFO     | 
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | job summary report
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | --------------------------------------------------
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | PanDA job id: 6893836266
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | task id: 47523449
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | errors: (none)
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:41:38] 2025-11-27 20:40:25,972 | INFO     | pilot state: finished 
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | transexitcode: 0
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | exeerrorcode: 0
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | exeerrordiag: 
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | exitcode: 0
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | exitmsg: OK
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | cpuconsumptiontime: 319670 s
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | nevents: 1000
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | neventsw: 0
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | pid: 25713
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | pgrp: 25713
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | corecount: 8
[2025-11-27 21:41:38] 2025-11-27 20:40:25,973 | INFO     | event service: False
[2025-11-27 21:41:38] 2025-11-27 20:40:25,974 | INFO     | sizes: {0: 2283483, 1: 2284168, 2: 2284367, 3: 2284367, 13: 2284395, 24: 2284451, 35: 2284607, 46: 2284635, 56: 2284663, 67: 2284691, 78: 2284719, 88: 2285055, 99:
[2025-11-27 21:41:38] 2025-11-27 20:40:25,974 | INFO     | --------------------------------------------------
[2025-11-27 21:41:38] 2025-11-27 20:40:25,974 | INFO     | 
[2025-11-27 21:41:38] 2025-11-27 20:40:25,974 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-27 21:41:38] 2025-11-27 20:40:25,990 | INFO     | time since job start (84866s) is within the limit (172800.0s)
[2025-11-27 21:41:38] 2025-11-27 20:40:26,043 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,043 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,043 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,043 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,044 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | job 6893836266 has completed (purged errors)
[2025-11-27 21:41:38] 2025-11-27 20:40:26,045 | INFO     | overall cleanup function is called
[2025-11-27 21:41:38] 2025-11-27 20:40:27,067 | INFO     | --- collectZombieJob: --- 10, [25713]
[2025-11-27 21:41:38] 2025-11-27 20:40:27,068 | INFO     | zombie collector waiting for pid 25713
[2025-11-27 21:41:38] 2025-11-27 20:40:27,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:41:38] 2025-11-27 20:40:27,068 | INFO     | collected zombie processes
[2025-11-27 21:41:38] 2025-11-27 20:40:27,068 | INFO     | will attempt to kill all subprocesses of pid=25713
[2025-11-27 21:41:38] 2025-11-27 20:40:27,178 | INFO     | process IDs to be killed: [25713] (in reverse order)
[2025-11-27 21:41:38] 2025-11-27 20:40:27,975 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:41:38] 2025-11-27 20:40:27,976 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:41:38] 2025-11-27 20:40:27,979 | INFO     | did not find any defunct processes belonging to 25713
[2025-11-27 21:41:38] 2025-11-27 20:40:27,981 | INFO     | did not find any defunct processes belonging to 25713
[2025-11-27 21:41:38] 2025-11-27 20:40:28,029 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:41:38] 2025-11-27 20:40:28,029 | INFO     | ready for new job
[2025-11-27 21:41:38] 2025-11-27 20:40:28,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:41:38] 2025-11-27 20:40:28,035 | INFO     | ***************************************
[2025-11-27 21:41:38] 2025-11-27 20:40:28,035 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:41:38] 2025-11-27 20:40:28,035 | INFO     | ***************************************
[2025-11-27 21:41:38] 2025-11-27 20:40:28,035 | INFO     | 
[2025-11-27 21:41:38] 2025-11-27 20:40:28,036 | INFO     | pilot is running in a VM
[2025-11-27 21:41:38] 2025-11-27 20:40:28,036 | INFO     | architecture information:
[2025-11-27 21:41:38] 2025-11-27 20:40:28,046 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:41:38] 2025-11-27 20:40:28,235 | INFO     | cat /etc/os-release:
[2025-11-27 21:41:38] NAME="CentOS Linux"
[2025-11-27 21:41:38] VERSION="7 (Core)"
[2025-11-27 21:41:38] ID="centos"
[2025-11-27 21:41:38] ID_LIKE="rhel fedora"
[2025-11-27 21:41:38] VERSION_ID="7"
[2025-11-27 21:41:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:41:38] ANSI_COLOR="0;31"
[2025-11-27 21:41:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:41:38] HOME_URL="https://www.centos.org/"
[2025-11-27 21:41:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:41:38] 
[2025-11-27 21:41:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:41:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:41:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:41:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:41:38] 
[2025-11-27 21:41:38] 2025-11-27 20:40:28,235 | INFO     | ***************************************
[2025-11-27 21:41:38] 2025-11-27 20:40:28,738 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-27 21:41:38] 2025-11-27 20:40:28,864 | INFO     | sufficient remaining disk space (495354642432 B)
[2025-11-27 21:41:38] 2025-11-27 20:40:28,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:41:38] 2025-11-27 20:40:28,865 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:41:38] 2025-11-27 20:40:28,865 | INFO     | update_server=False
[2025-11-27 21:41:38] 2025-11-27 20:40:28,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:41:38] 2025-11-27 20:40:28,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:41:38] 2025-11-27 20:40:28,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:41:38] 2025-11-27 20:40:28,952 | INFO     | aborting loop
[2025-11-27 21:41:38] 2025-11-27 20:40:29,322 | INFO     | all job control threads have been joined
[2025-11-27 21:41:38] 2025-11-27 20:40:29,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:41:38] 2025-11-27 20:40:29,763 | INFO     | all data control threads have been joined
[2025-11-27 21:41:38] 2025-11-27 20:40:29,871 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:29,958 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:29,965 | INFO     | all payload control threads have been joined
[2025-11-27 21:41:38] 2025-11-27 20:40:30,003 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,266 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,330 | INFO     | [job] control thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,471 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,500 | INFO     | [job] validate thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,718 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,770 | INFO     | [data] control thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,822 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,840 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:41:38] 2025-11-27 20:40:30,840 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:30,972 | INFO     | [payload] control thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:31,466 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:31,846 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:32,875 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:41:38] 2025-11-27 20:40:59,140 | INFO     | PID=19097 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:41:38] 2025-11-27 20:40:59,141 | INFO     | .. there are 9 such processes running
[2025-11-27 21:41:38] 2025-11-27 20:40:59,142 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:41:38] 2025-11-27 20:40:59,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:41:38] 2025-11-27 20:40:59,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:41:38] 2025-11-27 20:41:26,296 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:41:38] 2025-11-27 20:41:28,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523153065792)>', '<ExcThread(monitor, started 140522706417408)>']
[2025-11-27 21:41:38] 2025-11-27 20:41:28,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:41:38] 2025-11-27 20:41:28,313 | INFO     | [monitor] control thread has ended
[2025-11-27 21:41:38] 2025-11-27 20:41:33,208 | INFO     | all workflow threads have been joined
[2025-11-27 21:41:38] 2025-11-27 20:41:33,209 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:41:38] 2025-11-27 20:41:33,209 | INFO     | traces error code: 0
[2025-11-27 21:41:38] 2025-11-27 20:41:33,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:41:38] 2025-11-27 20:41:33,450 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:41:38] 2025-11-27 20:41:33,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:41:38] 2025-11-27 20:41:33,545 [wrapper] pilotpid: 19097
[2025-11-27 21:41:38] 2025-11-27 20:41:33,586 [wrapper] Pilot exit status: 0
[2025-11-27 21:41:38] 2025-11-27 20:41:33,810 [wrapper] pandaids: 6893836266
[2025-11-27 21:41:38] 2025-11-27 20:41:34,602 [wrapper] cleanup supervisor_pilot 31346 19098
[2025-11-27 21:41:38] 2025-11-27 20:41:34,693 [wrapper] Test setup, not cleaning
[2025-11-27 21:41:38] 2025-11-27 20:41:34,794 [wrapper] apfmon messages muted
[2025-11-27 21:41:38] 2025-11-27 20:41:34,937 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:41:38] 2025-11-27 20:41:35,019 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:41:38]  *** Error codes and diagnostics ***
[2025-11-27 21:41:38]     "exeErrorCode": 0,
[2025-11-27 21:41:38]     "exeErrorDiag": "",
[2025-11-27 21:41:38]     "pilotErrorCode": 0,
[2025-11-27 21:41:38]     "pilotErrorDiag": "",
[2025-11-27 21:41:38]  *** Listing of results directory ***
[2025-11-27 21:41:38] total 1339148
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 21:41:38] -rwx------. 1 boinc boinc     36292 Nov 20 11:15 runpilot2-wrapper.sh
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:16 queuedata.json
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc       100 Nov 26 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:41:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 22:01 run_atlas
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc       105 Nov 26 22:01 job.xml
[2025-11-27 21:41:38] -rw-r--r--. 2 boinc boinc 411483570 Nov 26 22:01 EVNT.47493127._000099.pool.root.1
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc      6390 Nov 26 22:01 init_data.xml
[2025-11-27 21:41:38] -rw-r--r--. 2 boinc boinc     15847 Nov 26 22:01 start_atlas.sh
[2025-11-27 21:41:38] drwxrwx--x. 2 boinc boinc        68 Nov 26 22:01 shared
[2025-11-27 21:41:38] -rw-r--r--. 2 boinc boinc    590102 Nov 26 22:01 input.tar.gz
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc         0 Nov 26 22:01 boinc_lockfile
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc      2784 Nov 26 22:01 pandaJob.out
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc    991538 Nov 26 22:05 agis_schedconf.cvmfs.json
[2025-11-27 21:41:38] drwx------. 5 boinc boinc      4096 Nov 26 22:06 pilot3
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc       533 Nov 27 21:22 boinc_task_state.xml
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc 928416636 Nov 27 21:37 HITS.47523449._000990.pool.root.1
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc      1028 Nov 27 21:38 memory_monitor_summary.json
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc   1516240 Nov 27 21:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc   2451916 Nov 27 21:38 log.47523449._000990.job.log.tgz.1
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc      7959 Nov 27 21:40 heartbeat.json
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc        95 Nov 27 21:40 pilot_heartbeat.json
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc      8192 Nov 27 21:41 boinc_mmap_file
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc        29 Nov 27 21:41 wrapper_checkpoint.txt
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc      4884 Nov 27 21:41 pilotlog.txt
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc  11290632 Nov 27 21:41 log.47523449._000990.job.log.1
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc       353 Nov 27 21:41 output.list
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc       620 Nov 27 21:41 runtime_log
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc  13762560 Nov 27 21:41 result.tar.gz
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc      8817 Nov 27 21:41 runtime_log.err
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc       662 Nov 27 21:41 rKmMDmbsGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdJGKDmpTPeEm.diag
[2025-11-27 21:41:38] -rw-r--r--. 1 boinc boinc     21517 Nov 27 21:41 stderr.txt
[2025-11-27 21:41:38] HITS file was successfully produced:
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc 928416636 Nov 27 21:37 shared/HITS.pool.root.1
[2025-11-27 21:41:38]  *** Contents of shared directory: ***
[2025-11-27 21:41:38] total 1322536
[2025-11-27 21:41:38] -rw-r--r--. 2 boinc boinc 411483570 Nov 26 22:01 ATLAS.root_0
[2025-11-27 21:41:38] -rw-r--r--. 2 boinc boinc     15847 Nov 26 22:01 start_atlas.sh
[2025-11-27 21:41:38] -rw-r--r--. 2 boinc boinc    590102 Nov 26 22:01 input.tar.gz
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc 928416636 Nov 27 21:37 HITS.pool.root.1
[2025-11-27 21:41:38] -rw-------. 1 boinc boinc  13762560 Nov 27 21:41 result.tar.gz
21:41:39 (15277): run_atlas exited; CPU time 320246.082241
21:41:39 (15277): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN