Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:58:38 (13457): wrapper (7.7.26015): starting
05:58:38 (13457): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:58:38] Arguments: --nthreads 8
[2025-11-24 05:58:38] Threads: 8
[2025-11-24 05:58:38] Checking for CVMFS
[2025-11-24 05:58:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:58:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:58:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:58:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:58:38] 2.11.2.0 5524 114715 139244 153242 0 81 15134235 18432000 1885 130560 0 83341604 99.974 4876619 32676 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 05:58:38] CVMFS is ok
[2025-11-24 05:58:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:58:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:58:38] Further information can be found at the LHC@home message board.
[2025-11-24 05:58:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:58:38] Checking for apptainer binary...
[2025-11-24 05:58:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:58:38] Running /usr/bin/apptainer --version
[2025-11-24 05:58:38] apptainer version 1.3.2-1.el7
[2025-11-24 05:58:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:58:39] c-206-5.aglt2.org
[2025-11-24 05:58:39] apptainer works
[2025-11-24 05:58:39] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:58:39] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:58:39] Starting ATLAS job with PandaID=6895340539
[2025-11-24 05:58:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:36:54]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:36:54] 2025-11-25 06:36:04,102 | INFO     | time since job start (70634s) is within the limit (172800.0s)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,393 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 01:36:54] 2025-11-25 06:36:04,400 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2472.3333333333335
[2025-11-25 01:36:54] 2025-11-25 06:36:04,404 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895340539/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,405 | INFO     | extracted standard info from prmon json
[2025-11-25 01:36:54] 2025-11-25 06:36:04,405 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:36:54] 2025-11-25 06:36:04,406 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:36:54] 2025-11-25 06:36:04,436 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:36:54] 2025-11-25 06:36:04,438 | INFO     | sum of square deviations: 481509315137.4791
[2025-11-25 01:36:54] 2025-11-25 06:36:04,484 | INFO     | sum of deviations: 2072220258587.9978
[2025-11-25 01:36:54] 2025-11-25 06:36:04,484 | INFO     | mean x: 1764017245.0906737
[2025-11-25 01:36:54] 2025-11-25 06:36:04,484 | INFO     | mean y: 2864995.3238341967
[2025-11-25 01:36:54] 2025-11-25 06:36:04,484 | INFO     | intersect: -7588747787.352644
[2025-11-25 01:36:54] 2025-11-25 06:36:04,486 | INFO     | chi2: 6.616066359185032
[2025-11-25 01:36:54] 2025-11-25 06:36:04,488 | INFO     | sum of square deviations: 475299258478.22437
[2025-11-25 01:36:54] 2025-11-25 06:36:04,533 | INFO     | sum of deviations: 2420638242597.6484
[2025-11-25 01:36:54] 2025-11-25 06:36:04,533 | INFO     | mean x: 1764017092.593235
[2025-11-25 01:36:54] 2025-11-25 06:36:04,533 | INFO     | mean y: 2873546.724197745
[2025-11-25 01:36:54] 2025-11-25 06:36:04,533 | INFO     | intersect: -8981039553.831865
[2025-11-25 01:36:54] 2025-11-25 06:36:04,535 | INFO     | chi2: 3.934259728445588
[2025-11-25 01:36:54] 2025-11-25 06:36:04,535 | INFO     | current chi2=3.934259728445588 (change=40.5347601602622 %)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,537 | INFO     | sum of square deviations: 469142830731.4601
[2025-11-25 01:36:54] 2025-11-25 06:36:04,581 | INFO     | sum of deviations: 2613128057104.931
[2025-11-25 01:36:54] 2025-11-25 06:36:04,581 | INFO     | mean x: 1764016940.0958188
[2025-11-25 01:36:54] 2025-11-25 06:36:04,582 | INFO     | mean y: 2878314.255226481
[2025-11-25 01:36:54] 2025-11-25 06:36:04,582 | INFO     | intersect: -9822705404.429659
[2025-11-25 01:36:54] 2025-11-25 06:36:04,583 | INFO     | chi2: 3.0433054525884886
[2025-11-25 01:36:54] 2025-11-25 06:36:04,584 | INFO     | current chi2=3.0433054525884886 (change=22.64604620318527 %)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,584 | INFO     | right removable region: 1147
[2025-11-25 01:36:54] 2025-11-25 06:36:04,586 | INFO     | sum of square deviations: 475298841238.2243
[2025-11-25 01:36:54] 2025-11-25 06:36:04,630 | INFO     | sum of deviations: 1771143732018.5884
[2025-11-25 01:36:54] 2025-11-25 06:36:04,631 | INFO     | mean x: 1764017397.593235
[2025-11-25 01:36:54] 2025-11-25 06:36:04,631 | INFO     | mean y: 2872380.152645273
[2025-11-25 01:36:54] 2025-11-25 06:36:04,631 | INFO     | intersect: -6570525418.96603
[2025-11-25 01:36:54] 2025-11-25 06:36:04,633 | INFO     | chi2: 4.563015193861688
[2025-11-25 01:36:54] 2025-11-25 06:36:04,633 | INFO     | current chi2=4.563015193861688 (change=31.03129645114744 %)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,635 | INFO     | sum of square deviations: 469142207251.0264
[2025-11-25 01:36:54] 2025-11-25 06:36:04,679 | INFO     | sum of deviations: 1685444306449.3833
[2025-11-25 01:36:54] 2025-11-25 06:36:04,679 | INFO     | mean x: 1764017550.0932057
[2025-11-25 01:36:54] 2025-11-25 06:36:04,679 | INFO     | mean y: 2874503.3048780486
[2025-11-25 01:36:54] 2025-11-25 06:36:04,679 | INFO     | intersect: -6334550035.200826
[2025-11-25 01:36:54] 2025-11-25 06:36:04,681 | INFO     | chi2: 4.484615753211299
[2025-11-25 01:36:54] 2025-11-25 06:36:04,681 | INFO     | current chi2=4.484615753211299 (change=1.7181498925502965 %)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,681 | INFO     | left removable region: 20
[2025-11-25 01:36:54] 2025-11-25 06:36:04,683 | INFO     | sum of square deviations: 443865241110.91516
[2025-11-25 01:36:54] 2025-11-25 06:36:04,725 | INFO     | sum of deviations: 2099000489674.6013
[2025-11-25 01:36:54] 2025-11-25 06:36:04,726 | INFO     | mean x: 1764017519.598048
[2025-11-25 01:36:54] 2025-11-25 06:36:04,726 | INFO     | mean y: 2892579.908606921
[2025-11-25 01:36:54] 2025-11-25 06:36:04,726 | INFO     | intersect: -8338994313.878683
[2025-11-25 01:36:54] 2025-11-25 06:36:04,728 | INFO     | chi2: 0.7092214711338171
[2025-11-25 01:36:54] 2025-11-25 06:36:04,728 | INFO     | current memory leak: 4.73 B/s (using 1127 data points, chi2=0.71)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,729 | INFO     | could have reported an average CPU frequency of 2630 MHz (42 samples)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,729 | INFO     | ..............................
[2025-11-25 01:36:54] 2025-11-25 06:36:04,730 | INFO     | . Timing measurements:
[2025-11-25 01:36:54] 2025-11-25 06:36:04,730 | INFO     | . get job = 0 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,730 | INFO     | . initial setup = 2 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,730 | INFO     | . payload setup = 5 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,730 | INFO     | . stage-in = 0 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,730 | INFO     | . payload execution = 70600 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,731 | INFO     | . stage-out = 4 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,731 | INFO     | . log creation = 0 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,731 | INFO     | ..............................
[2025-11-25 01:36:54] 2025-11-25 06:36:04,885 | INFO     | 
[2025-11-25 01:36:54] 2025-11-25 06:36:04,885 | INFO     | job summary report
[2025-11-25 01:36:54] 2025-11-25 06:36:04,885 | INFO     | --------------------------------------------------
[2025-11-25 01:36:54] 2025-11-25 06:36:04,886 | INFO     | PanDA job id: 6895340539
[2025-11-25 01:36:54] 2025-11-25 06:36:04,886 | INFO     | task id: 47556137
[2025-11-25 01:36:54] 2025-11-25 06:36:04,886 | INFO     | errors: (none)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,886 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:36:54] 2025-11-25 06:36:04,886 | INFO     | pilot state: finished 
[2025-11-25 01:36:54] 2025-11-25 06:36:04,886 | INFO     | transexitcode: 0
[2025-11-25 01:36:54] 2025-11-25 06:36:04,887 | INFO     | exeerrorcode: 0
[2025-11-25 01:36:54] 2025-11-25 06:36:04,887 | INFO     | exeerrordiag: 
[2025-11-25 01:36:54] 2025-11-25 06:36:04,887 | INFO     | exitcode: 0
[2025-11-25 01:36:54] 2025-11-25 06:36:04,887 | INFO     | exitmsg: OK
[2025-11-25 01:36:54] 2025-11-25 06:36:04,887 | INFO     | cpuconsumptiontime: 540963 s
[2025-11-25 01:36:54] 2025-11-25 06:36:04,887 | INFO     | nevents: 1000
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | neventsw: 0
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | pid: 23990
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | pgrp: 23990
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | corecount: 8
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | event service: False
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | sizes: {0: 2298635, 1: 2298777, 4: 2299039, 12: 2299067, 70609: 2354457, 70613: 2364242, 70615: 2364426, 70619: 2364672}
[2025-11-25 01:36:54] 2025-11-25 06:36:04,888 | INFO     | --------------------------------------------------
[2025-11-25 01:36:54] 2025-11-25 06:36:04,889 | INFO     | 
[2025-11-25 01:36:54] 2025-11-25 06:36:04,889 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 01:36:54] 2025-11-25 06:36:04,906 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,909 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,909 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:36:54] 2025-11-25 06:36:04,909 | INFO     | job 6895340539 has completed (purged errors)
[2025-11-25 01:36:54] 2025-11-25 06:36:04,909 | INFO     | overall cleanup function is called
[2025-11-25 01:36:54] 2025-11-25 06:36:05,289 | INFO     | PID=17343 has CPU usage=19.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 01:36:54] 2025-11-25 06:36:05,290 | INFO     | .. there are 3 such processes running
[2025-11-25 01:36:54] 2025-11-25 06:36:05,922 | INFO     | --- collectZombieJob: --- 10, [23990]
[2025-11-25 01:36:54] 2025-11-25 06:36:05,922 | INFO     | zombie collector waiting for pid 23990
[2025-11-25 01:36:54] 2025-11-25 06:36:05,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:36:54] 2025-11-25 06:36:05,922 | INFO     | collected zombie processes
[2025-11-25 01:36:54] 2025-11-25 06:36:05,922 | INFO     | will attempt to kill all subprocesses of pid=23990
[2025-11-25 01:36:54] 2025-11-25 06:36:06,067 | INFO     | process IDs to be killed: [23990] (in reverse order)
[2025-11-25 01:36:54] 2025-11-25 06:36:06,134 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:36:54] 2025-11-25 06:36:06,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:36:54] 2025-11-25 06:36:06,140 | INFO     | did not find any defunct processes belonging to 23990
[2025-11-25 01:36:54] 2025-11-25 06:36:06,145 | INFO     | did not find any defunct processes belonging to 23990
[2025-11-25 01:36:54] 2025-11-25 06:36:06,147 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:36:54] 2025-11-25 06:36:06,147 | INFO     | ready for new job
[2025-11-25 01:36:54] 2025-11-25 06:36:06,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:36:54] 2025-11-25 06:36:06,152 | INFO     | ***************************************
[2025-11-25 01:36:54] 2025-11-25 06:36:06,153 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:36:54] 2025-11-25 06:36:06,153 | INFO     | ***************************************
[2025-11-25 01:36:54] 2025-11-25 06:36:06,153 | INFO     | 
[2025-11-25 01:36:54] 2025-11-25 06:36:06,154 | INFO     | architecture information:
[2025-11-25 01:36:54] 2025-11-25 06:36:06,155 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:36:54] 2025-11-25 06:36:06,170 | INFO     | cat /etc/os-release:
[2025-11-25 01:36:54] NAME="CentOS Linux"
[2025-11-25 01:36:54] VERSION="7 (Core)"
[2025-11-25 01:36:54] ID="centos"
[2025-11-25 01:36:54] ID_LIKE="rhel fedora"
[2025-11-25 01:36:54] VERSION_ID="7"
[2025-11-25 01:36:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:36:54] ANSI_COLOR="0;31"
[2025-11-25 01:36:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:36:54] HOME_URL="https://www.centos.org/"
[2025-11-25 01:36:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:36:54] 
[2025-11-25 01:36:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:36:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:36:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:36:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:36:54] 
[2025-11-25 01:36:54] 2025-11-25 06:36:06,170 | INFO     | ***************************************
[2025-11-25 01:36:54] 2025-11-25 06:36:06,673 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 01:36:54] 2025-11-25 06:36:06,689 | INFO     | sufficient remaining disk space (24635244544 B)
[2025-11-25 01:36:54] 2025-11-25 06:36:06,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:36:54] 2025-11-25 06:36:06,690 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:36:54] 2025-11-25 06:36:06,690 | INFO     | update_server=False
[2025-11-25 01:36:54] 2025-11-25 06:36:06,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:36:54] 2025-11-25 06:36:06,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:36:54] 2025-11-25 06:36:06,691 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:36:54] 2025-11-25 06:36:06,691 | INFO     | aborting loop
[2025-11-25 01:36:54] 2025-11-25 06:36:06,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:36:54] 2025-11-25 06:36:07,056 | INFO     | all data control threads have been joined
[2025-11-25 01:36:54] 2025-11-25 06:36:07,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:36:54] 2025-11-25 06:36:07,334 | INFO     | all payload control threads have been joined
[2025-11-25 01:36:54] 2025-11-25 06:36:07,695 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:07,696 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:07,696 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:07,891 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,016 | INFO     | [job] validate thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,061 | INFO     | [data] control thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,169 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,188 | INFO     | all job control threads have been joined
[2025-11-25 01:36:54] 2025-11-25 06:36:08,301 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,339 | INFO     | [payload] control thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,784 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,808 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:08,978 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:09,194 | INFO     | [job] control thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:09,204 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:10,704 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:36:54] 2025-11-25 06:36:37,438 | INFO     | PID=17343 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:36:54] 2025-11-25 06:36:37,438 | INFO     | .. there are 3 such processes running
[2025-11-25 01:36:54] 2025-11-25 06:36:37,438 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:36:54] 2025-11-25 06:36:37,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:36:54] 2025-11-25 06:36:37,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:36:54] 2025-11-25 06:36:47,036 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:36:54] 2025-11-25 06:36:48,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660464203584)>', '<ExcThread(monitor, started 140660019545856)>']
[2025-11-25 01:36:54] 2025-11-25 06:36:49,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:36:54] 2025-11-25 06:36:49,494 | INFO     | [monitor] control thread has ended
[2025-11-25 01:36:54] 2025-11-25 06:36:53,702 | INFO     | all workflow threads have been joined
[2025-11-25 01:36:54] 2025-11-25 06:36:53,702 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:36:54] 2025-11-25 06:36:53,702 | INFO     | traces error code: 0
[2025-11-25 01:36:54] 2025-11-25 06:36:53,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:36:54] 2025-11-25 06:36:53,829 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:36:54] 2025-11-25 06:36:53,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:36:54] 2025-11-25 06:36:53,836 [wrapper] pilotpid: 17343
[2025-11-25 01:36:54] 2025-11-25 06:36:53,838 [wrapper] Pilot exit status: 0
[2025-11-25 01:36:54] 2025-11-25 06:36:53,849 [wrapper] pandaids: 6895340539
[2025-11-25 01:36:54] 2025-11-25 06:36:53,892 [wrapper] cleanup supervisor_pilot 22641 17344
[2025-11-25 01:36:54] 2025-11-25 06:36:53,894 [wrapper] Test setup, not cleaning
[2025-11-25 01:36:54] 2025-11-25 06:36:53,897 [wrapper] apfmon messages muted
[2025-11-25 01:36:54] 2025-11-25 06:36:53,900 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:36:54] 2025-11-25 06:36:53,903 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:36:54]  *** Error codes and diagnostics ***
[2025-11-25 01:36:54]     "exeErrorCode": 0,
[2025-11-25 01:36:54]     "exeErrorDiag": "",
[2025-11-25 01:36:54]     "pilotErrorCode": 0,
[2025-11-25 01:36:54]     "pilotErrorDiag": "",
[2025-11-25 01:36:54]  *** Listing of results directory ***
[2025-11-25 01:36:54] total 1325348
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 08:39 pilot3.tar.gz
[2025-11-25 01:36:54] -rwx------ 1 boincer umatlas     36292 Nov 22 08:47 runpilot2-wrapper.sh
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 08:47 queuedata.json
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas       100 Nov 24 05:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:36:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 05:58 run_atlas
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas       105 Nov 24 05:58 job.xml
[2025-11-25 01:36:54] -rw-r--r-- 2 boincer umatlas 409404631 Nov 24 05:58 EVNT.47483658._000390.pool.root.1
[2025-11-25 01:36:54] drwxrwx--x 2 boincer umatlas      4096 Nov 24 05:58 shared
[2025-11-25 01:36:54] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 05:58 input.tar.gz
[2025-11-25 01:36:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 05:58 start_atlas.sh
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas         0 Nov 24 05:58 boinc_lockfile
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas      2781 Nov 24 05:58 pandaJob.out
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas        57 Nov 24 05:58 setup.sh.local
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas    989824 Nov 24 05:58 agis_schedconf.cvmfs.json
[2025-11-25 01:36:54] drwx------ 5 boincer umatlas      4096 Nov 24 05:58 pilot3
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas       533 Nov 25 01:17 boinc_task_state.xml
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas 919604353 Nov 25 01:35 HITS.47556137._003851.pool.root.1
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas      1068 Nov 25 01:35 memory_monitor_summary.json
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas        95 Nov 25 01:35 pilot_heartbeat.json
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas   1516227 Nov 25 01:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas   2322808 Nov 25 01:35 log.47556137._003851.job.log.tgz.1
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas      7973 Nov 25 01:36 heartbeat.json
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas      5952 Nov 25 01:36 init_data.xml
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 01:36 boinc_mmap_file
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas        29 Nov 25 01:36 wrapper_checkpoint.txt
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas      4821 Nov 25 01:36 pilotlog.txt
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas   9790538 Nov 25 01:36 log.47556137._003851.job.log.1
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas       353 Nov 25 01:36 output.list
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas       620 Nov 25 01:36 runtime_log
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas  12134400 Nov 25 01:36 result.tar.gz
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas      9338 Nov 25 01:36 runtime_log.err
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas       667 Nov 25 01:36 ERGMDmq82g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmx7HKDm51zk3n.diag
[2025-11-25 01:36:54] -rw-r--r-- 1 boincer umatlas     21363 Nov 25 01:36 stderr.txt
[2025-11-25 01:36:54] HITS file was successfully produced:
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas 919604353 Nov 25 01:35 shared/HITS.pool.root.1
[2025-11-25 01:36:54]  *** Contents of shared directory: ***
[2025-11-25 01:36:54] total 1310320
[2025-11-25 01:36:54] -rw-r--r-- 2 boincer umatlas 409404631 Nov 24 05:58 ATLAS.root_0
[2025-11-25 01:36:54] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 05:58 input.tar.gz
[2025-11-25 01:36:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 05:58 start_atlas.sh
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas 919604353 Nov 25 01:35 HITS.pool.root.1
[2025-11-25 01:36:54] -rw------- 1 boincer umatlas  12134400 Nov 25 01:36 result.tar.gz
01:36:55 (13457): run_atlas exited; CPU time 539636.551572
01:36:55 (13457): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN