Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:31:22 (2768469): wrapper (7.7.26015): starting
12:31:22 (2768469): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 12:31:22] Arguments: --nthreads 8
[2025-11-24 12:31:22] Threads: 8
[2025-11-24 12:31:22] Checking for CVMFS
[2025-11-24 12:31:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:31:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:31:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:31:44] 2.13.2.0 6051 31830 215044 153254 0 89 39918788 40960000 10934 16776704 0 34338584 99.784 17464859 37445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 12:31:44] CVMFS is ok
[2025-11-24 12:31:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:31:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:31:44] Further information can be found at the LHC@home message board.
[2025-11-24 12:31:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:31:44] Checking for apptainer binary...
[2025-11-24 12:31:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:31:44] Running /usr/bin/apptainer --version
[2025-11-24 12:31:44] apptainer version 1.4.4-1.el9
[2025-11-24 12:31:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:31:45] c-210-37-3.aglt2.org
[2025-11-24 12:31:45] apptainer works
[2025-11-24 12:31:45] Set ATHENA_PROC_NUMBER=8
[2025-11-24 12:31:45] Set ATHENA_CORE_NUMBER=8
[2025-11-24 12:31:45] Starting ATLAS job with PandaID=6895361859
[2025-11-24 12:31:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:57:25]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:57:25] 2025-11-25 16:56:25,442 | INFO     | PID=2773430 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:57:25] 2025-11-25 16:56:25,442 | INFO     | .. there are 12 such processes running
[2025-11-25 11:57:25] 2025-11-25 16:56:25,875 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 11:57:25] 2025-11-25 16:56:25,879 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2819.0438214285714
[2025-11-25 11:57:25] 2025-11-25 16:56:25,926 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895361859/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:57:25] 2025-11-25 16:56:25,927 | INFO     | extracted standard info from prmon json
[2025-11-25 11:57:25] 2025-11-25 16:56:25,927 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:57:25] 2025-11-25 16:56:25,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:57:25] 2025-11-25 16:56:25,977 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:57:25] 2025-11-25 16:56:25,983 | INFO     | sum of square deviations: 811533774404.5
[2025-11-25 11:57:25] 2025-11-25 16:56:26,075 | INFO     | sum of deviations: 2827870551955.0015
[2025-11-25 11:57:25] 2025-11-25 16:56:26,076 | INFO     | mean x: 1764047704.5
[2025-11-25 11:57:25] 2025-11-25 16:56:26,076 | INFO     | mean y: 2965821.595065312
[2025-11-25 11:57:25] 2025-11-25 16:56:26,076 | INFO     | intersect: -6144034726.17623
[2025-11-25 11:57:25] 2025-11-25 16:56:26,078 | INFO     | chi2: 11.568072820681497
[2025-11-25 11:57:25] 2025-11-25 16:56:26,084 | INFO     | sum of square deviations: 802735197130.7363
[2025-11-25 11:57:25] 2025-11-25 16:56:26,175 | INFO     | sum of deviations: 3300205072161.8325
[2025-11-25 11:57:25] 2025-11-25 16:56:26,176 | INFO     | mean x: 1764047552.0138383
[2025-11-25 11:57:25] 2025-11-25 16:56:26,176 | INFO     | mean y: 2974006.6402039328
[2025-11-25 11:57:25] 2025-11-25 16:56:26,176 | INFO     | intersect: -7249378574.260254
[2025-11-25 11:57:25] 2025-11-25 16:56:26,182 | INFO     | chi2: 8.434388001748632
[2025-11-25 11:57:25] 2025-11-25 16:56:26,183 | INFO     | current chi2=8.434388001748632 (change=27.08908274963862 %)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,189 | INFO     | sum of square deviations: 794000397895.0005
[2025-11-25 11:57:25] 2025-11-25 16:56:26,276 | INFO     | sum of deviations: 3842907488908.244
[2025-11-25 11:57:25] 2025-11-25 16:56:26,276 | INFO     | mean x: 1764047399.5270467
[2025-11-25 11:57:25] 2025-11-25 16:56:26,276 | INFO     | mean y: 2983480.709795322
[2025-11-25 11:57:25] 2025-11-25 16:56:26,276 | INFO     | intersect: -8534884989.386455
[2025-11-25 11:57:25] 2025-11-25 16:56:26,284 | INFO     | chi2: 4.479051598748209
[2025-11-25 11:57:25] 2025-11-25 16:56:26,285 | INFO     | current chi2=4.479051598748209 (change=46.895357460202156 %)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,287 | INFO     | sum of square deviations: 785328143596.7068
[2025-11-25 11:57:25] 2025-11-25 16:56:26,374 | INFO     | sum of deviations: 4063971070279.183
[2025-11-25 11:57:25] 2025-11-25 16:56:26,375 | INFO     | mean x: 1764047247.0308144
[2025-11-25 11:57:25] 2025-11-25 16:56:26,375 | INFO     | mean y: 2987366.947909024
[2025-11-25 11:57:25] 2025-11-25 16:56:26,375 | INFO     | intersect: -9125727854.826206
[2025-11-25 11:57:25] 2025-11-25 16:56:26,377 | INFO     | chi2: 3.6771447018340924
[2025-11-25 11:57:25] 2025-11-25 16:56:26,377 | INFO     | current chi2=3.6771447018340924 (change=17.90349763191456 %)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,377 | INFO     | right removable region: 1362
[2025-11-25 11:57:25] 2025-11-25 16:56:26,383 | INFO     | sum of square deviations: 802731918861.709
[2025-11-25 11:57:25] 2025-11-25 16:56:26,445 | INFO     | time since job start (84218s) is within the limit (172800.0s)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,473 | INFO     | sum of deviations: 2364454516633.8027
[2025-11-25 11:57:25] 2025-11-25 16:56:26,479 | INFO     | mean x: 1764047857.0145667
[2025-11-25 11:57:25] 2025-11-25 16:56:26,479 | INFO     | mean y: 2973847.9599417336
[2025-11-25 11:57:25] 2025-11-25 16:56:26,480 | INFO     | intersect: -5193045925.354735
[2025-11-25 11:57:25] 2025-11-25 16:56:26,482 | INFO     | chi2: 8.802993729334036
[2025-11-25 11:57:25] 2025-11-25 16:56:26,482 | INFO     | current chi2=8.802993729334036 (change=23.902677085538652 %)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,482 | INFO     | left removable region: 10
[2025-11-25 11:57:25] 2025-11-25 16:56:26,488 | INFO     | sum of square deviations: 766468631641.614
[2025-11-25 11:57:25] 2025-11-25 16:56:26,571 | INFO     | sum of deviations: 3480819931273.1025
[2025-11-25 11:57:25] 2025-11-25 16:56:26,572 | INFO     | mean x: 1764047521.5569527
[2025-11-25 11:57:25] 2025-11-25 16:56:26,572 | INFO     | mean y: 2998651.946745562
[2025-11-25 11:57:25] 2025-11-25 16:56:26,576 | INFO     | intersect: -8008199092.176277
[2025-11-25 11:57:25] 2025-11-25 16:56:26,578 | INFO     | chi2: 0.5414796231255417
[2025-11-25 11:57:25] 2025-11-25 16:56:26,579 | INFO     | current memory leak: 4.54 B/s (using 1352 data points, chi2=0.54)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,584 | INFO     | could have reported an average CPU frequency of 2783 MHz (49 samples)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | ..............................
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . Timing measurements:
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . get job = 0 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . initial setup = 5 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . payload setup = 40 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . stage-in = 0 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . payload execution = 84065 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,585 | INFO     | . stage-out = 8 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,586 | INFO     | . log creation = 2 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,586 | INFO     | ..............................
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | 
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | job summary report
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | --------------------------------------------------
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | PanDA job id: 6895361859
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | task id: 47556149
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | errors: (none)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | pilot state: finished 
[2025-11-25 11:57:25] 2025-11-25 16:56:26,797 | INFO     | transexitcode: 0
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | exeerrorcode: 0
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | exeerrordiag: 
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | exitcode: 0
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | exitmsg: OK
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | cpuconsumptiontime: 243274 s
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | nevents: 1000
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | neventsw: 0
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | pid: 2780224
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | pgrp: 2780224
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | corecount: 8
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | event service: False
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | sizes: {0: 2284083, 1: 2284167, 2: 2284366, 13: 2284366, 24: 2284422, 32: 2284712, 35: 2284868, 84111: 2349319, 84119: 2358318, 84121: 2358374, 84155: 2358620}
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | --------------------------------------------------
[2025-11-25 11:57:25] 2025-11-25 16:56:26,798 | INFO     | 
[2025-11-25 11:57:25] 2025-11-25 16:56:26,799 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 11:57:25] 2025-11-25 16:56:26,876 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | job 6895361859 has completed (purged errors)
[2025-11-25 11:57:25] 2025-11-25 16:56:26,878 | INFO     | overall cleanup function is called
[2025-11-25 11:57:25] 2025-11-25 16:56:27,894 | INFO     | --- collectZombieJob: --- 10, [2780224]
[2025-11-25 11:57:25] 2025-11-25 16:56:27,894 | INFO     | zombie collector waiting for pid 2780224
[2025-11-25 11:57:25] 2025-11-25 16:56:27,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:57:25] 2025-11-25 16:56:27,894 | INFO     | collected zombie processes
[2025-11-25 11:57:25] 2025-11-25 16:56:27,894 | INFO     | will attempt to kill all subprocesses of pid=2780224
[2025-11-25 11:57:25] 2025-11-25 16:56:28,491 | INFO     | process IDs to be killed: [2780224] (in reverse order)
[2025-11-25 11:57:25] 2025-11-25 16:56:28,658 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:57:25] 2025-11-25 16:56:28,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:57:25] 2025-11-25 16:56:28,676 | INFO     | did not find any defunct processes belonging to 2780224
[2025-11-25 11:57:25] 2025-11-25 16:56:28,698 | INFO     | did not find any defunct processes belonging to 2780224
[2025-11-25 11:57:25] 2025-11-25 16:56:28,703 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:57:25] 2025-11-25 16:56:28,704 | INFO     | ready for new job
[2025-11-25 11:57:25] 2025-11-25 16:56:28,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:57:25] 2025-11-25 16:56:28,714 | INFO     | ***************************************
[2025-11-25 11:57:25] 2025-11-25 16:56:28,714 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:57:25] 2025-11-25 16:56:28,714 | INFO     | ***************************************
[2025-11-25 11:57:25] 2025-11-25 16:56:28,714 | INFO     | 
[2025-11-25 11:57:25] 2025-11-25 16:56:28,721 | INFO     | architecture information:
[2025-11-25 11:57:25] 2025-11-25 16:56:28,722 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:57:25] 2025-11-25 16:56:28,821 | INFO     | cat /etc/os-release:
[2025-11-25 11:57:25] NAME="CentOS Linux"
[2025-11-25 11:57:25] VERSION="7 (Core)"
[2025-11-25 11:57:25] ID="centos"
[2025-11-25 11:57:25] ID_LIKE="rhel fedora"
[2025-11-25 11:57:25] VERSION_ID="7"
[2025-11-25 11:57:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:57:25] ANSI_COLOR="0;31"
[2025-11-25 11:57:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:57:25] HOME_URL="https://www.centos.org/"
[2025-11-25 11:57:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:57:25] 
[2025-11-25 11:57:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:57:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:57:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:57:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:57:25] 
[2025-11-25 11:57:25] 2025-11-25 16:56:28,822 | INFO     | ***************************************
[2025-11-25 11:57:25] 2025-11-25 16:56:29,325 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 11:57:25] 2025-11-25 16:56:29,369 | INFO     | sufficient remaining disk space (68333600768 B)
[2025-11-25 11:57:25] 2025-11-25 16:56:29,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:57:25] 2025-11-25 16:56:29,371 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:57:25] 2025-11-25 16:56:29,371 | INFO     | update_server=False
[2025-11-25 11:57:25] 2025-11-25 16:56:29,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:57:25] 2025-11-25 16:56:29,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:57:25] 2025-11-25 16:56:29,758 | INFO     | all job control threads have been joined
[2025-11-25 11:57:25] 2025-11-25 16:56:30,000 | INFO     | all payload control threads have been joined
[2025-11-25 11:57:25] 2025-11-25 16:56:30,379 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:57:25] 2025-11-25 16:56:30,386 | INFO     | aborting loop
[2025-11-25 11:57:25] 2025-11-25 16:56:30,423 | INFO     | all data control threads have been joined
[2025-11-25 11:57:25] 2025-11-25 16:56:30,750 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,764 | INFO     | [job] control thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,774 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,798 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,799 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,799 | INFO     | [job] validate thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,800 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:30,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:57:25] 2025-11-25 16:56:31,006 | INFO     | [payload] control thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:31,039 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:31,394 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:31,429 | INFO     | [data] control thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:31,730 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:31,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:31,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:57:25] 2025-11-25 16:56:32,817 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:56:34,914 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:57:25] 2025-11-25 16:57:00,081 | INFO     | PID=2773430 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:57:25] 2025-11-25 16:57:00,081 | INFO     | .. there are 12 such processes running
[2025-11-25 11:57:25] 2025-11-25 16:57:00,082 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:57:25] 2025-11-25 16:57:00,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:57:25] 2025-11-25 16:57:00,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:57:25] 2025-11-25 16:57:18,821 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:57:25] 2025-11-25 16:57:19,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251243886400)>', '<ExcThread(monitor, started 140250596759296)>']
[2025-11-25 11:57:25] 2025-11-25 16:57:20,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:57:25] 2025-11-25 16:57:20,252 | INFO     | [monitor] control thread has ended
[2025-11-25 11:57:25] 2025-11-25 16:57:24,274 | INFO     | all workflow threads have been joined
[2025-11-25 11:57:25] 2025-11-25 16:57:24,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:57:25] 2025-11-25 16:57:24,274 | INFO     | traces error code: 0
[2025-11-25 11:57:25] 2025-11-25 16:57:24,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:57:25] 2025-11-25 16:57:24,557 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:57:25] 2025-11-25 16:57:24,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:57:25] 2025-11-25 16:57:24,664 [wrapper] pilotpid: 2773430
[2025-11-25 11:57:25] 2025-11-25 16:57:24,704 [wrapper] Pilot exit status: 0
[2025-11-25 11:57:25] 2025-11-25 16:57:24,844 [wrapper] pandaids: 6895361859
[2025-11-25 11:57:25] 2025-11-25 16:57:25,034 [wrapper] cleanup supervisor_pilot  646659 2773431
[2025-11-25 11:57:25] 2025-11-25 16:57:25,040 [wrapper] Test setup, not cleaning
[2025-11-25 11:57:25] 2025-11-25 16:57:25,044 [wrapper] apfmon messages muted
[2025-11-25 11:57:25] 2025-11-25 16:57:25,047 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:57:25] 2025-11-25 16:57:25,051 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:57:25]  *** Error codes and diagnostics ***
[2025-11-25 11:57:25]     "exeErrorCode": 0,
[2025-11-25 11:57:25]     "exeErrorDiag": "",
[2025-11-25 11:57:25]     "pilotErrorCode": 0,
[2025-11-25 11:57:25]     "pilotErrorDiag": "",
[2025-11-25 11:57:25]  *** Listing of results directory ***
[2025-11-25 11:57:25] total 1323716
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:16 pilot3.tar.gz
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 09:41 queuedata.json
[2025-11-25 11:57:25] -rwx------. 1 boincer umatlas     36292 Nov 23 09:42 runpilot2-wrapper.sh
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas       100 Nov 24 12:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:57:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 12:31 run_atlas
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas       105 Nov 24 12:31 job.xml
[2025-11-25 11:57:25] -rw-r--r--. 2 boincer umatlas 409398674 Nov 24 12:31 EVNT.47483658._001168.pool.root.1
[2025-11-25 11:57:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 12:31 shared
[2025-11-25 11:57:25] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 12:31 input.tar.gz
[2025-11-25 11:57:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:31 start_atlas.sh
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas         0 Nov 24 12:31 boinc_lockfile
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 12:31 pandaJob.out
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas        57 Nov 24 12:31 setup.sh.local
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas    991801 Nov 24 12:32 agis_schedconf.cvmfs.json
[2025-11-25 11:57:25] drwx------. 5 boincer umatlas      4096 Nov 24 12:32 pilot3
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:33 boinc_task_state.xml
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas 915414734 Nov 25 11:54 HITS.47556149._001547.pool.root.1
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas      6843 Nov 25 11:54 init_data.xml
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas      1058 Nov 25 11:55 memory_monitor_summary.json
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas   1516240 Nov 25 11:55 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas   2441884 Nov 25 11:55 log.47556149._001547.job.log.tgz.1
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas        95 Nov 25 11:56 pilot_heartbeat.json
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas      8620 Nov 25 11:56 heartbeat.json
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas        29 Nov 25 11:57 wrapper_checkpoint.txt
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 11:57 boinc_mmap_file
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas      4824 Nov 25 11:57 pilotlog.txt
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas  10935889 Nov 25 11:57 log.47556149._001547.job.log.1
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas       353 Nov 25 11:57 output.list
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas       620 Nov 25 11:57 runtime_log
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas  13393920 Nov 25 11:57 result.tar.gz
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas       662 Nov 25 11:57 vTvNDmdTQh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwyKKDm7QncLm.diag
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas      9353 Nov 25 11:57 runtime_log.err
[2025-11-25 11:57:25] -rw-r--r--. 1 boincer umatlas     21430 Nov 25 11:57 stderr.txt
[2025-11-25 11:57:25] HITS file was successfully produced:
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas 915414734 Nov 25 11:54 shared/HITS.pool.root.1
[2025-11-25 11:57:25]  *** Contents of shared directory: ***
[2025-11-25 11:57:25] total 1307448
[2025-11-25 11:57:25] -rw-r--r--. 2 boincer umatlas 409398674 Nov 24 12:31 ATLAS.root_0
[2025-11-25 11:57:25] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 12:31 input.tar.gz
[2025-11-25 11:57:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:31 start_atlas.sh
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas 915414734 Nov 25 11:54 HITS.pool.root.1
[2025-11-25 11:57:25] -rw-------. 1 boincer umatlas  13393920 Nov 25 11:57 result.tar.gz
11:57:26 (2768469): run_atlas exited; CPU time 244125.588309
11:57:26 (2768469): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN