Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:19:49 (3476): wrapper (7.7.26015): starting
02:19:49 (3476): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 02:19:49] Arguments: --nthreads 8
[2025-11-27 02:19:49] Threads: 8
[2025-11-27 02:19:49] Checking for CVMFS
[2025-11-27 02:19:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:19:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:19:52] 2.11.2.0 10419 86035 119096 153342 3 75 17836006 25165824 1288 130560 14 28113382 99.879 14283107 1478 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 02:19:52] CVMFS is ok
[2025-11-27 02:19:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:19:52] Checking for apptainer binary...
[2025-11-27 02:19:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:19:52] Running /usr/bin/apptainer --version
[2025-11-27 02:19:52] apptainer version 1.3.2-1.el7
[2025-11-27 02:19:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:20:03] cg-vwn422.simple-grid.lan
[2025-11-27 02:20:03] apptainer works
[2025-11-27 02:20:03] Set ATHENA_PROC_NUMBER=8
[2025-11-27 02:20:03] Set ATHENA_CORE_NUMBER=8
[2025-11-27 02:20:04] Starting ATLAS job with PandaID=6895352393
[2025-11-27 02:20:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:05:04]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:05:04] 2025-11-28 00:04:18,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:05:04] 2025-11-28 00:04:20,633 | INFO     | time since job start (81589s) is within the limit (172800.0s)
[2025-11-28 01:05:04] 2025-11-28 00:04:21,391 | INFO     | monitor loop #5499: job 0:6895352393 is in state 'finished'
[2025-11-28 01:05:04] 2025-11-28 00:04:21,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:05:04] 2025-11-28 00:04:22,648 | INFO     | time since job start (81591s) is within the limit (172800.0s)
[2025-11-28 01:05:04] 2025-11-28 00:04:23,902 | INFO     | monitor loop #5500: job 0:6895352393 is in state 'finished'
[2025-11-28 01:05:04] 2025-11-28 00:04:23,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 01:05:04] 2025-11-28 00:04:24,655 | INFO     | time since job start (81593s) is within the limit (172800.0s)
[2025-11-28 01:05:04] 2025-11-28 00:04:25,675 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 01:05:04] 2025-11-28 00:04:25,676 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 01:05:04] 2025-11-28 00:04:25,678 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895352393/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:05:04] 2025-11-28 00:04:25,679 | INFO     | extracted standard info from prmon json
[2025-11-28 01:05:04] 2025-11-28 00:04:25,679 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:05:04] 2025-11-28 00:04:25,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:05:04] 2025-11-28 00:04:25,719 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:05:04] 2025-11-28 00:04:25,722 | INFO     | sum of square deviations: 726227781955.4791
[2025-11-28 01:05:04] 2025-11-28 00:04:25,780 | INFO     | sum of deviations: 3018701904850.677
[2025-11-28 01:05:04] 2025-11-28 00:04:25,780 | INFO     | mean x: 1764247656.5700302
[2025-11-28 01:05:04] 2025-11-28 00:04:25,780 | INFO     | mean y: 2847608.439006024
[2025-11-28 01:05:04] 2025-11-28 00:04:25,780 | INFO     | intersect: -7330578478.863702
[2025-11-28 01:05:04] 2025-11-28 00:04:25,782 | INFO     | chi2: 15.316116039662226
[2025-11-28 01:05:04] 2025-11-28 00:04:25,787 | INFO     | sum of square deviations: 718056192364.7411
[2025-11-28 01:05:04] 2025-11-28 00:04:25,837 | INFO     | sum of deviations: 3462166177202.1475
[2025-11-28 01:05:04] 2025-11-28 00:04:25,838 | INFO     | mean x: 1764247504.074074
[2025-11-28 01:05:04] 2025-11-28 00:04:25,838 | INFO     | mean y: 2855883.549508692
[2025-11-28 01:05:04] 2025-11-28 00:04:25,838 | INFO     | intersect: -8503606565.723416
[2025-11-28 01:05:04] 2025-11-28 00:04:25,839 | INFO     | chi2: 12.108960106483726
[2025-11-28 01:05:04] 2025-11-28 00:04:25,839 | INFO     | current chi2=12.108960106483726 (change=20.939746897146314 %)
[2025-11-28 01:05:04] 2025-11-28 00:04:25,839 | INFO     | right removable region: 1322
[2025-11-28 01:05:04] 2025-11-28 00:04:25,841 | INFO     | sum of square deviations: 718055325554.7399
[2025-11-28 01:05:04] 2025-11-28 00:04:25,899 | INFO     | sum of deviations: 2492559130073.038
[2025-11-28 01:05:04] 2025-11-28 00:04:25,899 | INFO     | mean x: 1764247809.074074
[2025-11-28 01:05:04] 2025-11-28 00:04:25,900 | INFO     | mean y: 2857425.030234316
[2025-11-28 01:05:04] 2025-11-28 00:04:25,900 | INFO     | intersect: -6121311323.139159
[2025-11-28 01:05:04] 2025-11-28 00:04:25,901 | INFO     | chi2: 11.167792861354918
[2025-11-28 01:05:04] 2025-11-28 00:04:25,901 | INFO     | current chi2=11.167792861354918 (change=27.08469410629245 %)
[2025-11-28 01:05:04] 2025-11-28 00:04:25,903 | INFO     | sum of square deviations: 709944405191.451
[2025-11-28 01:05:04] 2025-11-28 00:04:25,963 | INFO     | sum of deviations: 2094242948783.9536
[2025-11-28 01:05:04] 2025-11-28 00:04:25,963 | INFO     | mean x: 1764247961.5781486
[2025-11-28 01:05:04] 2025-11-28 00:04:25,963 | INFO     | mean y: 2864913.1024279213
[2025-11-28 01:05:04] 2025-11-28 00:04:25,964 | INFO     | intersect: -5201435348.190755
[2025-11-28 01:05:04] 2025-11-28 00:04:25,965 | INFO     | chi2: 8.902962285154471
[2025-11-28 01:05:04] 2025-11-28 00:04:25,965 | INFO     | current chi2=8.902962285154471 (change=20.280019555499436 %)
[2025-11-28 01:05:04] 2025-11-28 00:04:25,966 | INFO     | left removable region: 20
[2025-11-28 01:05:04] 2025-11-28 00:04:25,967 | INFO     | sum of square deviations: 684402033234.2059
[2025-11-28 01:05:04] 2025-11-28 00:04:26,024 | INFO     | sum of deviations: 2432338224366.1943
[2025-11-28 01:05:04] 2025-11-28 00:04:26,024 | INFO     | mean x: 1764248083.5844853
[2025-11-28 01:05:04] 2025-11-28 00:04:26,025 | INFO     | mean y: 2879325.534562212
[2025-11-28 01:05:04] 2025-11-28 00:04:26,025 | INFO     | intersect: -6267189789.6734295
[2025-11-28 01:05:04] 2025-11-28 00:04:26,026 | INFO     | chi2: 4.483688653815054
[2025-11-28 01:05:04] 2025-11-28 00:04:26,026 | INFO     | current memory leak: 3.55 B/s (using 1302 data points, chi2=4.48)
[2025-11-28 01:05:04] 2025-11-28 00:04:26,027 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | ..............................
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . Timing measurements:
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . get job = 0 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . initial setup = 13 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . payload setup = 163 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . stage-in = 0 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . payload execution = 81137 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . stage-out = 4 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | . log creation = 2 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,028 | INFO     | ..............................
[2025-11-28 01:05:04] 2025-11-28 00:04:26,137 | INFO     | 
[2025-11-28 01:05:04] 2025-11-28 00:04:26,137 | INFO     | job summary report
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | --------------------------------------------------
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | PanDA job id: 6895352393
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | task id: 47556137
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | errors: (none)
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | pilot state: finished 
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | transexitcode: 0
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | exeerrorcode: 0
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | exeerrordiag: 
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | exitcode: 0
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | exitmsg: OK
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | cpuconsumptiontime: 308087 s
[2025-11-28 01:05:04] 2025-11-28 00:04:26,138 | INFO     | nevents: 1000
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | neventsw: 0
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | pid: 13861
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | pgrp: 13861
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | corecount: 8
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | event service: False
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 34: 2284427, 44: 2284583, 55: 2284611, 66: 2284639, 77: 2284667, 87: 2284723, 90: 2285293, 98
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | --------------------------------------------------
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | 
[2025-11-28 01:05:04] 2025-11-28 00:04:26,139 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-28 01:05:04] 2025-11-28 00:04:26,662 | INFO     | time since job start (81595s) is within the limit (172800.0s)
[2025-11-28 01:05:04] 2025-11-28 00:04:26,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,745 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | job 6895352393 has completed (purged errors)
[2025-11-28 01:05:04] 2025-11-28 00:04:26,747 | INFO     | overall cleanup function is called
[2025-11-28 01:05:04] 2025-11-28 00:04:27,769 | INFO     | --- collectZombieJob: --- 10, [13861]
[2025-11-28 01:05:04] 2025-11-28 00:04:27,769 | INFO     | zombie collector waiting for pid 13861
[2025-11-28 01:05:04] 2025-11-28 00:04:27,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:05:04] 2025-11-28 00:04:27,769 | INFO     | collected zombie processes
[2025-11-28 01:05:04] 2025-11-28 00:04:27,769 | INFO     | will attempt to kill all subprocesses of pid=13861
[2025-11-28 01:05:04] 2025-11-28 00:04:27,884 | INFO     | process IDs to be killed: [13861] (in reverse order)
[2025-11-28 01:05:04] 2025-11-28 00:04:28,498 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:05:04] 2025-11-28 00:04:28,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:05:04] 2025-11-28 00:04:28,502 | INFO     | did not find any defunct processes belonging to 13861
[2025-11-28 01:05:04] 2025-11-28 00:04:28,504 | INFO     | did not find any defunct processes belonging to 13861
[2025-11-28 01:05:04] 2025-11-28 00:04:28,566 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:05:04] 2025-11-28 00:04:28,566 | INFO     | ready for new job
[2025-11-28 01:05:04] 2025-11-28 00:04:28,566 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:05:04] 2025-11-28 00:04:28,571 | INFO     | ***************************************
[2025-11-28 01:05:04] 2025-11-28 00:04:28,571 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:05:04] 2025-11-28 00:04:28,571 | INFO     | ***************************************
[2025-11-28 01:05:04] 2025-11-28 00:04:28,572 | INFO     | 
[2025-11-28 01:05:04] 2025-11-28 00:04:28,572 | INFO     | pilot is running in a VM
[2025-11-28 01:05:04] 2025-11-28 00:04:28,572 | INFO     | architecture information:
[2025-11-28 01:05:04] 2025-11-28 00:04:28,586 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:05:04] 2025-11-28 00:04:28,851 | INFO     | cat /etc/os-release:
[2025-11-28 01:05:04] NAME="CentOS Linux"
[2025-11-28 01:05:04] VERSION="7 (Core)"
[2025-11-28 01:05:04] ID="centos"
[2025-11-28 01:05:04] ID_LIKE="rhel fedora"
[2025-11-28 01:05:04] VERSION_ID="7"
[2025-11-28 01:05:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:05:04] ANSI_COLOR="0;31"
[2025-11-28 01:05:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:05:04] HOME_URL="https://www.centos.org/"
[2025-11-28 01:05:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:05:04] 
[2025-11-28 01:05:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:05:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:05:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:05:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:05:04] 
[2025-11-28 01:05:04] 2025-11-28 00:04:28,851 | INFO     | ***************************************
[2025-11-28 01:05:04] 2025-11-28 00:04:29,355 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-28 01:05:04] 2025-11-28 00:04:29,529 | INFO     | sufficient remaining disk space (494846083072 B)
[2025-11-28 01:05:04] 2025-11-28 00:04:29,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:05:04] 2025-11-28 00:04:29,529 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:05:04] 2025-11-28 00:04:29,529 | INFO     | update_server=False
[2025-11-28 01:05:04] 2025-11-28 00:04:29,529 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:05:04] 2025-11-28 00:04:29,530 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:05:04] 2025-11-28 00:04:29,666 | INFO     | all job control threads have been joined
[2025-11-28 01:05:04] 2025-11-28 00:04:29,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:05:04] 2025-11-28 00:04:29,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:05:04] 2025-11-28 00:04:29,933 | INFO     | aborting loop
[2025-11-28 01:05:04] 2025-11-28 00:04:30,064 | INFO     | all data control threads have been joined
[2025-11-28 01:05:04] 2025-11-28 00:04:30,536 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:30,672 | INFO     | [job] control thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:30,717 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:30,801 | INFO     | all payload control threads have been joined
[2025-11-28 01:05:04] 2025-11-28 00:04:30,885 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:30,939 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:30,954 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,070 | INFO     | [data] control thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,143 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,148 | INFO     | [job] validate thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:05:04] 2025-11-28 00:04:31,538 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,807 | INFO     | [payload] control thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,879 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:31,991 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:32,076 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:32,159 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:33,728 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:05:04] 2025-11-28 00:04:52,531 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:05:04] 2025-11-28 00:04:53,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990129071936)>', '<ExcThread(monitor, started 139989409060608)>']
[2025-11-28 01:05:04] 2025-11-28 00:04:58,847 | INFO     | all workflow threads have been joined
[2025-11-28 01:05:04] 2025-11-28 00:04:58,847 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:05:04] 2025-11-28 00:04:58,847 | INFO     | traces error code: 0
[2025-11-28 01:05:04] 2025-11-28 00:04:58,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:05:04] 2025-11-28 00:04:59,799 | INFO     | PID=7262 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 01:05:04] 2025-11-28 00:04:59,800 | INFO     | .. there are 9 such processes running
[2025-11-28 01:05:04] 2025-11-28 00:04:59,800 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:05:04] 2025-11-28 00:04:59,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:05:04] 2025-11-28 00:04:59,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:05:04] 2025-11-28 00:04:59,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:05:04] 2025-11-28 00:04:59,800 | INFO     | [monitor] control thread has ended
[2025-11-28 01:05:04] 2025-11-28 00:05:00,132 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:05:04] 2025-11-28 00:05:00,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:05:04] 2025-11-28 00:05:00,302 [wrapper] pilotpid: 7262
[2025-11-28 01:05:04] 2025-11-28 00:05:00,415 [wrapper] Pilot exit status: 0
[2025-11-28 01:05:04] 2025-11-28 00:05:00,734 [wrapper] pandaids: 6895352393
[2025-11-28 01:05:04] 2025-11-28 00:05:01,551 [wrapper] cleanup supervisor_pilot 13769 7263
[2025-11-28 01:05:04] 2025-11-28 00:05:01,608 [wrapper] Test setup, not cleaning
[2025-11-28 01:05:04] 2025-11-28 00:05:01,714 [wrapper] apfmon messages muted
[2025-11-28 01:05:04] 2025-11-28 00:05:01,860 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:05:04] 2025-11-28 00:05:01,932 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:05:04]  *** Error codes and diagnostics ***
[2025-11-28 01:05:04]     "exeErrorCode": 0,
[2025-11-28 01:05:04]     "exeErrorDiag": "",
[2025-11-28 01:05:04]     "pilotErrorCode": 0,
[2025-11-28 01:05:04]     "pilotErrorDiag": "",
[2025-11-28 01:05:04]  *** Listing of results directory ***
[2025-11-28 01:05:04] total 1300992
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc    576529 Nov 23 04:01 pilot3.tar.gz
[2025-11-28 01:05:04] -rwx------. 1 boinc boinc     36292 Nov 23 04:21 runpilot2-wrapper.sh
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc      5112 Nov 23 04:21 queuedata.json
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc       100 Nov 27 02:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:05:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 02:19 run_atlas
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc       105 Nov 27 02:19 job.xml
[2025-11-28 01:05:04] -rw-r--r--. 2 boinc boinc 407374637 Nov 27 02:19 EVNT.47483658._000593.pool.root.1
[2025-11-28 01:05:04] -rw-r--r--. 2 boinc boinc     15847 Nov 27 02:19 start_atlas.sh
[2025-11-28 01:05:04] drwxrwx--x. 2 boinc boinc        68 Nov 27 02:19 shared
[2025-11-28 01:05:04] -rw-r--r--. 2 boinc boinc    590098 Nov 27 02:19 input.tar.gz
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc      6391 Nov 27 02:19 init_data.xml
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc         0 Nov 27 02:19 boinc_lockfile
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc      2786 Nov 27 02:20 pandaJob.out
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc    991530 Nov 27 02:24 agis_schedconf.cvmfs.json
[2025-11-28 01:05:04] drwx------. 5 boinc boinc      4096 Nov 27 02:24 pilot3
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc       533 Nov 28 00:47 boinc_task_state.xml
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc 894375691 Nov 28 01:01 HITS.47556137._005882.pool.root.1
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc      1029 Nov 28 01:02 memory_monitor_summary.json
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc   1516240 Nov 28 01:02 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc   2425812 Nov 28 01:02 log.47556137._005882.job.log.tgz.1
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc        95 Nov 28 01:04 pilot_heartbeat.json
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc      7956 Nov 28 01:04 heartbeat.json
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc      8192 Nov 28 01:04 boinc_mmap_file
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc        29 Nov 28 01:04 wrapper_checkpoint.txt
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc       819 Nov 28 01:04 pilotlog.txt
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc  10855224 Nov 28 01:05 log.47556137._005882.job.log.1
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc       353 Nov 28 01:05 output.list
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc       620 Nov 28 01:05 runtime_log
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc  13301760 Nov 28 01:05 result.tar.gz
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc      8817 Nov 28 01:05 runtime_log.err
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc       662 Nov 28 01:05 n3kLDmXqFh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4ZKKDmuoc14m.diag
[2025-11-28 01:05:04] -rw-r--r--. 1 boinc boinc     21221 Nov 28 01:05 stderr.txt
[2025-11-28 01:05:04] HITS file was successfully produced:
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc 894375691 Nov 28 01:01 shared/HITS.pool.root.1
[2025-11-28 01:05:04]  *** Contents of shared directory: ***
[2025-11-28 01:05:04] total 1284832
[2025-11-28 01:05:04] -rw-r--r--. 2 boinc boinc 407374637 Nov 27 02:19 ATLAS.root_0
[2025-11-28 01:05:04] -rw-r--r--. 2 boinc boinc     15847 Nov 27 02:19 start_atlas.sh
[2025-11-28 01:05:04] -rw-r--r--. 2 boinc boinc    590098 Nov 27 02:19 input.tar.gz
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc 894375691 Nov 28 01:01 HITS.pool.root.1
[2025-11-28 01:05:04] -rw-------. 1 boinc boinc  13301760 Nov 28 01:05 result.tar.gz
01:05:06 (3476): run_atlas exited; CPU time 308621.408715
01:05:06 (3476): called boinc_finish(0)

</stderr_txt>
]]>

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