Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:49:32 (2291413): wrapper (7.7.26015): starting
02:49:32 (2291413): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 02:49:32] Arguments: --nthreads 4
[2025-11-27 02:49:32] Threads: 4
[2025-11-27 02:49:32] Checking for CVMFS
[2025-11-27 02:49:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:49:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:49:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:49:32] 2.9.2.0 504476 11954 99664 153342 2 81 36009894 36864000 0 130560 0 4738762 99.939 592875 4091 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 02:49:32] CVMFS is ok
[2025-11-27 02:49:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:49:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:49:32] Further information can be found at the LHC@home message board.
[2025-11-27 02:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:49:32] Checking for apptainer binary...
[2025-11-27 02:49:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:49:32] Running /usr/bin/apptainer --version
[2025-11-27 02:49:32] apptainer version 1.4.1-1.1
[2025-11-27 02:49:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:49:32] thA338
[2025-11-27 02:49:32] apptainer works
[2025-11-27 02:49:32] Set ATHENA_PROC_NUMBER=4
[2025-11-27 02:49:32] Set ATHENA_CORE_NUMBER=4
[2025-11-27 02:49:32] Starting ATLAS job with PandaID=6894053080
[2025-11-27 02:49:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:55:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:55:08] 2025-11-27 03:54:37,569 | INFO     | zombie collector waiting for pid 2301811
[2025-11-27 04:55:08] 2025-11-27 03:54:37,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 04:55:08] 2025-11-27 03:54:37,569 | INFO     | collected zombie processes
[2025-11-27 04:55:08] 2025-11-27 03:54:37,569 | INFO     | will attempt to kill all subprocesses of pid=2301811
[2025-11-27 04:55:08] 2025-11-27 03:54:37,618 | INFO     | process IDs to be killed: [2301811] (in reverse order)
[2025-11-27 04:55:08] 2025-11-27 03:54:37,653 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 04:55:08] 2025-11-27 03:54:37,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 04:55:08] 2025-11-27 03:54:37,655 | INFO     | did not find any defunct processes belonging to 2301811
[2025-11-27 04:55:08] 2025-11-27 03:54:37,657 | INFO     | did not find any defunct processes belonging to 2301811
[2025-11-27 04:55:08] 2025-11-27 03:54:37,657 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 04:55:08] 2025-11-27 03:54:37,658 | INFO     | ready for new job
[2025-11-27 04:55:08] 2025-11-27 03:54:37,658 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 04:55:08] 2025-11-27 03:54:37,658 | INFO     | ***************************************
[2025-11-27 04:55:08] 2025-11-27 03:54:37,658 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 04:55:08] 2025-11-27 03:54:37,658 | INFO     | ***************************************
[2025-11-27 04:55:08] 2025-11-27 03:54:37,658 | INFO     | 
[2025-11-27 04:55:08] 2025-11-27 03:54:37,659 | INFO     | architecture information:
[2025-11-27 04:55:08] 2025-11-27 03:54:37,659 | INFO     | executing command: cat /etc/os-release
[2025-11-27 04:55:08] 2025-11-27 03:54:37,673 | INFO     | cat /etc/os-release:
[2025-11-27 04:55:08] NAME="CentOS Linux"
[2025-11-27 04:55:08] VERSION="7 (Core)"
[2025-11-27 04:55:08] ID="centos"
[2025-11-27 04:55:08] ID_LIKE="rhel fedora"
[2025-11-27 04:55:08] VERSION_ID="7"
[2025-11-27 04:55:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:55:08] ANSI_COLOR="0;31"
[2025-11-27 04:55:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:55:08] HOME_URL="https://www.centos.org/"
[2025-11-27 04:55:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:55:08] 
[2025-11-27 04:55:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:55:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:55:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:55:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:55:08] 
[2025-11-27 04:55:08] 2025-11-27 03:54:37,674 | INFO     | ***************************************
[2025-11-27 04:55:08] 2025-11-27 03:54:38,177 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 04:55:08] 2025-11-27 03:54:38,194 | INFO     | sufficient remaining disk space (221233807360 B)
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | INFO     | update_server=False
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | INFO     | aborting loop
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:55:08] 2025-11-27 03:54:38,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:55:08] 2025-11-27 03:54:38,755 | INFO     | all job control threads have been joined
[2025-11-27 04:55:08] 2025-11-27 03:54:38,772 | INFO     | all data control threads have been joined
[2025-11-27 04:55:08] 2025-11-27 03:54:39,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:55:08] 2025-11-27 03:54:39,201 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,201 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,201 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,339 | INFO     | all payload control threads have been joined
[2025-11-27 04:55:08] 2025-11-27 03:54:39,368 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,465 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,595 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,757 | INFO     | [job] control thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:39,778 | INFO     | [data] control thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:40,109 | INFO     | [job] validate thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:40,177 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:40,322 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:40,338 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:40,344 | INFO     | [payload] control thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:41,077 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:42,202 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:48,574 | INFO     | job.realtimelogging is not enabled
[2025-11-27 04:55:08] 2025-11-27 03:54:48,981 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:55:08] 2025-11-27 03:54:49,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:55:08] 2025-11-27 03:54:49,983 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153007327040)>', '<ExcThread(monitor, started 140152148055808)>']
[2025-11-27 04:55:08] 2025-11-27 03:54:55,009 | INFO     | all workflow threads have been joined
[2025-11-27 04:55:08] 2025-11-27 03:54:55,009 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:55:08] 2025-11-27 03:54:55,009 | INFO     | traces error code: 0
[2025-11-27 04:55:08] 2025-11-27 03:54:55,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:55:08] 2025-11-27 03:55:08,382 | INFO     | PID=2295206 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:55:08] 2025-11-27 03:55:08,382 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:55:08] 2025-11-27 03:55:08,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:55:08] 2025-11-27 03:55:08,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:55:08] 2025-11-27 03:55:08,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:55:08] 2025-11-27 03:55:08,382 | INFO     | [monitor] control thread has ended
[2025-11-27 04:55:08] 2025-11-27 03:55:08,459 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:55:08] 2025-11-27 03:55:08,464 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:55:08] 2025-11-27 03:55:08,468 [wrapper] pilotpid: 2295206
[2025-11-27 04:55:08] 2025-11-27 03:55:08,472 [wrapper] Pilot exit status: 0
[2025-11-27 04:55:08] 2025-11-27 03:55:08,484 [wrapper] pandaids: 6894053080
[2025-11-27 04:55:08] 2025-11-27 03:55:08,508 [wrapper] cleanup supervisor_pilot 2318687 2295207
[2025-11-27 04:55:08] 2025-11-27 03:55:08,512 [wrapper] Test setup, not cleaning
[2025-11-27 04:55:08] 2025-11-27 03:55:08,516 [wrapper] apfmon messages muted
[2025-11-27 04:55:08] 2025-11-27 03:55:08,520 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:55:08] 2025-11-27 03:55:08,523 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:55:08]  *** Error codes and diagnostics ***
[2025-11-27 04:55:08]     "exeErrorCode": 0,
[2025-11-27 04:55:08]     "exeErrorDiag": "",
[2025-11-27 04:55:08]     "pilotErrorCode": 0,
[2025-11-27 04:55:08]     "pilotErrorDiag": "",
[2025-11-27 04:55:08]  *** Listing of results directory ***
[2025-11-27 04:55:08] total 603536
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc    576529 Nov 23 14:59 pilot3.tar.gz
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc      5112 Nov 23 15:13 queuedata.json
[2025-11-27 04:55:08] -rwx------ 1 boinc boinc     36292 Nov 23 15:14 runpilot2-wrapper.sh
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc       100 Nov 27 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:55:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 02:49 run_atlas
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc       105 Nov 27 02:49 job.xml
[2025-11-27 04:55:08] -rw-r--r-- 2 boinc boinc 307735345 Nov 27 02:49 EVNT.47523616._000002.pool.root.1
[2025-11-27 04:55:08] -rw-r--r-- 2 boinc boinc    589951 Nov 27 02:49 input.tar.gz
[2025-11-27 04:55:08] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:49 start_atlas.sh
[2025-11-27 04:55:08] drwxrwx--x 2 boinc boinc      4096 Nov 27 02:49 shared
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:49 boinc_setup_complete
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc      6376 Nov 27 02:49 init_data.xml
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:49 boinc_lockfile
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc      2608 Nov 27 02:49 pandaJob.out
[2025-11-27 04:55:08] -rw------- 1 boinc boinc    991530 Nov 27 02:49 agis_schedconf.cvmfs.json
[2025-11-27 04:55:08] -rw------- 1 boinc boinc   1516240 Nov 27 02:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:55:08] drwx------ 5 boinc boinc      4096 Nov 27 02:49 pilot3
[2025-11-27 04:55:08] -rw------- 1 boinc boinc 303640814 Nov 27 04:54 HITS.47523618._000026.pool.root.1
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc       530 Nov 27 04:54 boinc_task_state.xml
[2025-11-27 04:55:08] -rw------- 1 boinc boinc        95 Nov 27 04:54 pilot_heartbeat.json
[2025-11-27 04:55:08] -rw------- 1 boinc boinc      1022 Nov 27 04:54 memory_monitor_summary.json
[2025-11-27 04:55:08] -rw------- 1 boinc boinc    291954 Nov 27 04:54 log.47523618._000026.job.log.tgz.1
[2025-11-27 04:55:08] -rw------- 1 boinc boinc      7747 Nov 27 04:54 heartbeat.json
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc      8192 Nov 27 04:54 boinc_mmap_file
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc        27 Nov 27 04:54 wrapper_checkpoint.txt
[2025-11-27 04:55:08] -rw------- 1 boinc boinc       747 Nov 27 04:55 pilotlog.txt
[2025-11-27 04:55:08] -rw------- 1 boinc boinc   1081547 Nov 27 04:55 log.47523618._000026.job.log.1
[2025-11-27 04:55:08] -rw------- 1 boinc boinc       357 Nov 27 04:55 output.list
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc       620 Nov 27 04:55 runtime_log
[2025-11-27 04:55:08] -rw------- 1 boinc boinc   1392640 Nov 27 04:55 result.tar.gz
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc      8897 Nov 27 04:55 runtime_log.err
[2025-11-27 04:55:08] -rw------- 1 boinc boinc       659 Nov 27 04:55 AkeLDmb2Ph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxxKKDmJPosBn.diag
[2025-11-27 04:55:08] -rw-r--r-- 1 boinc boinc     10832 Nov 27 04:55 stderr.txt
[2025-11-27 04:55:08] HITS file was successfully produced:
[2025-11-27 04:55:08] -rw------- 1 boinc boinc 303640814 Nov 27 04:54 shared/HITS.pool.root.1
[2025-11-27 04:55:08]  *** Contents of shared directory: ***
[2025-11-27 04:55:08] total 599012
[2025-11-27 04:55:08] -rw-r--r-- 2 boinc boinc 307735345 Nov 27 02:49 ATLAS.root_0
[2025-11-27 04:55:08] -rw-r--r-- 2 boinc boinc    589951 Nov 27 02:49 input.tar.gz
[2025-11-27 04:55:08] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:49 start_atlas.sh
[2025-11-27 04:55:08] -rw------- 1 boinc boinc 303640814 Nov 27 04:54 HITS.pool.root.1
[2025-11-27 04:55:08] -rw------- 1 boinc boinc   1392640 Nov 27 04:55 result.tar.gz
04:55:10 (2291413): run_atlas exited; CPU time 28732.620249
04:55:10 (2291413): called boinc_finish(0)

</stderr_txt>
]]>

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