Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:22:51 (2909679): wrapper (7.7.26015): starting
05:22:51 (2909679): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 05:22:51] Arguments: --nthreads 4
[2025-11-27 05:22:51] Threads: 4
[2025-11-27 05:22:51] Checking for CVMFS
[2025-11-27 05:22:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:22:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:22:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:22:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:22:52] 2.9.2.0 1145218 12126 92500 153347 1 81 31706260 36864000 0 130560 0 4883104 99.941 594247 4056 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 05:22:52] CVMFS is ok
[2025-11-27 05:22:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:22:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:22:52] Further information can be found at the LHC@home message board.
[2025-11-27 05:22:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:22:52] Checking for apptainer binary...
[2025-11-27 05:22:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:22:52] Running /usr/bin/apptainer --version
[2025-11-27 05:22:52] apptainer version 1.4.1-1.1
[2025-11-27 05:22:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:22:52] thA315a
[2025-11-27 05:22:52] apptainer works
[2025-11-27 05:22:52] Set ATHENA_PROC_NUMBER=4
[2025-11-27 05:22:52] Set ATHENA_CORE_NUMBER=4
[2025-11-27 05:22:52] Starting ATLAS job with PandaID=6893834575
[2025-11-27 05:22:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:14:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:14:36] 2025-11-27 11:14:18,839 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:14:36] 2025-11-27 11:14:18,839 | INFO     | job 6893834575 has completed (purged errors)
[2025-11-27 12:14:36] 2025-11-27 11:14:18,839 | INFO     | overall cleanup function is called
[2025-11-27 12:14:36] 2025-11-27 11:14:19,849 | INFO     | --- collectZombieJob: --- 10, [2920035]
[2025-11-27 12:14:36] 2025-11-27 11:14:19,849 | INFO     | zombie collector waiting for pid 2920035
[2025-11-27 12:14:36] 2025-11-27 11:14:19,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:14:36] 2025-11-27 11:14:19,849 | INFO     | collected zombie processes
[2025-11-27 12:14:36] 2025-11-27 11:14:19,849 | INFO     | will attempt to kill all subprocesses of pid=2920035
[2025-11-27 12:14:36] 2025-11-27 11:14:19,895 | INFO     | process IDs to be killed: [2920035] (in reverse order)
[2025-11-27 12:14:36] 2025-11-27 11:14:19,926 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:14:36] 2025-11-27 11:14:19,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:14:36] 2025-11-27 11:14:19,928 | INFO     | did not find any defunct processes belonging to 2920035
[2025-11-27 12:14:36] 2025-11-27 11:14:19,929 | INFO     | did not find any defunct processes belonging to 2920035
[2025-11-27 12:14:36] 2025-11-27 11:14:19,930 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:14:36] 2025-11-27 11:14:19,930 | INFO     | ready for new job
[2025-11-27 12:14:36] 2025-11-27 11:14:19,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:14:36] 2025-11-27 11:14:19,931 | INFO     | ***************************************
[2025-11-27 12:14:36] 2025-11-27 11:14:19,931 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:14:36] 2025-11-27 11:14:19,931 | INFO     | ***************************************
[2025-11-27 12:14:36] 2025-11-27 11:14:19,931 | INFO     | 
[2025-11-27 12:14:36] 2025-11-27 11:14:19,932 | INFO     | architecture information:
[2025-11-27 12:14:36] 2025-11-27 11:14:19,932 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:14:36] 2025-11-27 11:14:19,945 | INFO     | cat /etc/os-release:
[2025-11-27 12:14:36] NAME="CentOS Linux"
[2025-11-27 12:14:36] VERSION="7 (Core)"
[2025-11-27 12:14:36] ID="centos"
[2025-11-27 12:14:36] ID_LIKE="rhel fedora"
[2025-11-27 12:14:36] VERSION_ID="7"
[2025-11-27 12:14:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:14:36] ANSI_COLOR="0;31"
[2025-11-27 12:14:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:14:36] HOME_URL="https://www.centos.org/"
[2025-11-27 12:14:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:14:36] 
[2025-11-27 12:14:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:14:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:14:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:14:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:14:36] 
[2025-11-27 12:14:36] 2025-11-27 11:14:19,945 | INFO     | ***************************************
[2025-11-27 12:14:36] 2025-11-27 11:14:20,448 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 12:14:36] 2025-11-27 11:14:20,465 | INFO     | sufficient remaining disk space (224184500224 B)
[2025-11-27 12:14:36] 2025-11-27 11:14:20,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:14:36] 2025-11-27 11:14:20,465 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | INFO     | update_server=False
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:14:36] 2025-11-27 11:14:20,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:14:36] 2025-11-27 11:14:20,566 | INFO     | all payload control threads have been joined
[2025-11-27 12:14:36] 2025-11-27 11:14:20,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:14:36] 2025-11-27 11:14:20,999 | INFO     | aborting loop
[2025-11-27 12:14:36] 2025-11-27 11:14:21,147 | INFO     | all job control threads have been joined
[2025-11-27 12:14:36] 2025-11-27 11:14:21,361 | INFO     | all data control threads have been joined
[2025-11-27 12:14:36] 2025-11-27 11:14:21,471 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:21,472 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:21,572 | INFO     | [payload] control thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:21,606 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:21,658 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,005 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,139 | INFO     | [job] validate thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,152 | INFO     | [job] control thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,209 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,281 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,367 | INFO     | [data] control thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,472 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,612 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:22,834 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:24,473 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:14:36] 2025-11-27 11:14:31,695 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:14:36] 2025-11-27 11:14:31,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140582257223488)>', '<ExcThread(monitor, started 140581149845248)>']
[2025-11-27 12:14:36] 2025-11-27 11:14:32,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:14:36] 2025-11-27 11:14:32,528 | INFO     | [monitor] control thread has ended
[2025-11-27 12:14:36] 2025-11-27 11:14:36,751 | INFO     | all workflow threads have been joined
[2025-11-27 12:14:36] 2025-11-27 11:14:36,752 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:14:36] 2025-11-27 11:14:36,752 | INFO     | traces error code: 0
[2025-11-27 12:14:36] 2025-11-27 11:14:36,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:14:36] 2025-11-27 11:14:36,820 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:14:36] 2025-11-27 11:14:36,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:14:36] 2025-11-27 11:14:36,828 [wrapper] pilotpid: 2913482
[2025-11-27 12:14:36] 2025-11-27 11:14:36,831 [wrapper] Pilot exit status: 0
[2025-11-27 12:14:36] 2025-11-27 11:14:36,842 [wrapper] pandaids: 6893834575
[2025-11-27 12:14:36] 2025-11-27 11:14:36,863 [wrapper] cleanup supervisor_pilot 2965188 2913483
[2025-11-27 12:14:36] 2025-11-27 11:14:36,867 [wrapper] Test setup, not cleaning
[2025-11-27 12:14:36] 2025-11-27 11:14:36,870 [wrapper] apfmon messages muted
[2025-11-27 12:14:36] 2025-11-27 11:14:36,874 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:14:36] 2025-11-27 11:14:36,877 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:14:36]  *** Error codes and diagnostics ***
[2025-11-27 12:14:36]     "exeErrorCode": 0,
[2025-11-27 12:14:36]     "exeErrorDiag": "",
[2025-11-27 12:14:36]     "pilotErrorCode": 0,
[2025-11-27 12:14:36]     "pilotErrorDiag": "",
[2025-11-27 12:14:36]  *** Listing of results directory ***
[2025-11-27 12:14:36] total 1326496
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:13 queuedata.json
[2025-11-27 12:14:36] -rwx------ 1 boinc boinc     36292 Nov 20 11:13 runpilot2-wrapper.sh
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc       100 Nov 27 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:14:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 05:22 run_atlas
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc       105 Nov 27 05:22 job.xml
[2025-11-27 12:14:36] -rw-r--r-- 2 boinc boinc 411288193 Nov 27 05:22 EVNT.47493127._000067.pool.root.1
[2025-11-27 12:14:36] -rw-r--r-- 2 boinc boinc    590097 Nov 27 05:22 input.tar.gz
[2025-11-27 12:14:36] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:22 start_atlas.sh
[2025-11-27 12:14:36] drwxrwx--x 2 boinc boinc      4096 Nov 27 05:22 shared
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:22 boinc_setup_complete
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc      6372 Nov 27 05:22 init_data.xml
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc         0 Nov 27 05:22 boinc_lockfile
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc      2784 Nov 27 05:22 pandaJob.out
[2025-11-27 12:14:36] -rw------- 1 boinc boinc    991570 Nov 27 05:22 agis_schedconf.cvmfs.json
[2025-11-27 12:14:36] drwx------ 5 boinc boinc      4096 Nov 27 05:22 pilot3
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc       531 Nov 27 12:08 boinc_task_state.xml
[2025-11-27 12:14:36] -rw------- 1 boinc boinc 933650815 Nov 27 12:13 HITS.47523449._000664.pool.root.1
[2025-11-27 12:14:36] -rw------- 1 boinc boinc      1029 Nov 27 12:14 memory_monitor_summary.json
[2025-11-27 12:14:36] -rw------- 1 boinc boinc        95 Nov 27 12:14 pilot_heartbeat.json
[2025-11-27 12:14:36] -rw------- 1 boinc boinc   1516240 Nov 27 12:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:14:36] -rw------- 1 boinc boinc   1258396 Nov 27 12:14 log.47523449._000664.job.log.tgz.1
[2025-11-27 12:14:36] -rw------- 1 boinc boinc      8572 Nov 27 12:14 heartbeat.json
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc      8192 Nov 27 12:14 boinc_mmap_file
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc        28 Nov 27 12:14 wrapper_checkpoint.txt
[2025-11-27 12:14:36] -rw------- 1 boinc boinc      4556 Nov 27 12:14 pilotlog.txt
[2025-11-27 12:14:36] -rw------- 1 boinc boinc   3481429 Nov 27 12:14 log.47523449._000664.job.log.1
[2025-11-27 12:14:36] -rw------- 1 boinc boinc       353 Nov 27 12:14 output.list
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc       620 Nov 27 12:14 runtime_log
[2025-11-27 12:14:36] -rw------- 1 boinc boinc   4761600 Nov 27 12:14 result.tar.gz
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc      8903 Nov 27 12:14 runtime_log.err
[2025-11-27 12:14:36] -rw------- 1 boinc boinc       666 Nov 27 12:14 bQiKDmdqGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiDHKDmvz5klm.diag
[2025-11-27 12:14:36] -rw-r--r-- 1 boinc boinc     11055 Nov 27 12:14 stderr.txt
[2025-11-27 12:14:36] HITS file was successfully produced:
[2025-11-27 12:14:36] -rw------- 1 boinc boinc 933650815 Nov 27 12:13 shared/HITS.pool.root.1
[2025-11-27 12:14:36]  *** Contents of shared directory: ***
[2025-11-27 12:14:36] total 1318680
[2025-11-27 12:14:36] -rw-r--r-- 2 boinc boinc 411288193 Nov 27 05:22 ATLAS.root_0
[2025-11-27 12:14:36] -rw-r--r-- 2 boinc boinc    590097 Nov 27 05:22 input.tar.gz
[2025-11-27 12:14:36] -rw-r--r-- 2 boinc boinc     15847 Nov 27 05:22 start_atlas.sh
[2025-11-27 12:14:36] -rw------- 1 boinc boinc 933650815 Nov 27 12:13 HITS.pool.root.1
[2025-11-27 12:14:36] -rw------- 1 boinc boinc   4761600 Nov 27 12:14 result.tar.gz
12:14:38 (2909679): run_atlas exited; CPU time 96281.041292
12:14:38 (2909679): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN