Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:15:28 (18348): wrapper (7.7.26015): starting
21:15:28 (18348): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:15:28] Arguments: --nthreads 8
[2025-11-26 21:15:28] Threads: 8
[2025-11-26 21:15:28] Checking for CVMFS
[2025-11-26 21:15:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:15:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:15:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:15:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:15:31] 2.11.2.0 24996 285697 140508 153333 1 85 17429194 25165824 1288 130560 11 136996677 99.888 75184331 2787 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 21:15:31] CVMFS is ok
[2025-11-26 21:15:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:15:31] Checking for apptainer binary...
[2025-11-26 21:15:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:15:31] Running /usr/bin/apptainer --version
[2025-11-26 21:15:31] apptainer version 1.3.2-1.el7
[2025-11-26 21:15:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:15:36] cg-vwn259.simple-grid.lan
[2025-11-26 21:15:36] apptainer works
[2025-11-26 21:15:36] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:15:36] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:15:36] Starting ATLAS job with PandaID=6895352604
[2025-11-26 21:15:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:16:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:16:20] 2025-11-27 19:15:33,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:20] 2025-11-27 19:15:34,576 | INFO     | time since job start (82570s) is within the limit (172800.0s)
[2025-11-27 20:16:20] 2025-11-27 19:15:35,964 | INFO     | monitor loop #5562: job 0:6895352604 is in state 'finished'
[2025-11-27 20:16:20] 2025-11-27 19:15:35,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:20] 2025-11-27 19:15:36,583 | INFO     | time since job start (82572s) is within the limit (172800.0s)
[2025-11-27 20:16:20] 2025-11-27 19:15:37,874 | INFO     | PID=22144 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 20:16:20] 2025-11-27 19:15:37,874 | INFO     | .. there are 9 such processes running
[2025-11-27 20:16:20] 2025-11-27 19:15:38,474 | INFO     | monitor loop #5563: job 0:6895352604 is in state 'finished'
[2025-11-27 20:16:20] 2025-11-27 19:15:38,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:20] 2025-11-27 19:15:38,875 | INFO     | time since job start (82574s) is within the limit (172800.0s)
[2025-11-27 20:16:20] 2025-11-27 19:15:40,882 | INFO     | time since job start (82576s) is within the limit (172800.0s)
[2025-11-27 20:16:20] 2025-11-27 19:15:40,980 | INFO     | monitor loop #5564: job 0:6895352604 is in state 'finished'
[2025-11-27 20:16:20] 2025-11-27 19:15:40,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:20] 2025-11-27 19:15:42,890 | INFO     | time since job start (82578s) is within the limit (172800.0s)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,462 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:16:20] 2025-11-27 19:15:43,463 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 20:16:20] 2025-11-27 19:15:43,465 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6895352604/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,466 | INFO     | extracted standard info from prmon json
[2025-11-27 20:16:20] 2025-11-27 19:15:43,466 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:16:20] 2025-11-27 19:15:43,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:16:20] 2025-11-27 19:15:43,491 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:16:20] 2025-11-27 19:15:43,493 | INFO     | sum of square deviations: 752793967787.7024
[2025-11-27 20:16:20] 2025-11-27 19:15:43,505 | INFO     | monitor loop #5565: job 0:6895352604 is in state 'finished'
[2025-11-27 20:16:20] 2025-11-27 19:15:43,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,569 | INFO     | sum of deviations: 3595225023058.8667
[2025-11-27 20:16:20] 2025-11-27 19:15:43,569 | INFO     | mean x: 1764229859.5684524
[2025-11-27 20:16:20] 2025-11-27 19:15:43,570 | INFO     | mean y: 2837329.001488095
[2025-11-27 20:16:20] 2025-11-27 19:15:43,570 | INFO     | intersect: -8422845671.8709135
[2025-11-27 20:16:20] 2025-11-27 19:15:43,572 | INFO     | chi2: 23.46430734044062
[2025-11-27 20:16:20] 2025-11-27 19:15:43,573 | INFO     | sum of square deviations: 744423904631.9733
[2025-11-27 20:16:20] 2025-11-27 19:15:43,641 | INFO     | sum of deviations: 4038096126661.834
[2025-11-27 20:16:20] 2025-11-27 19:15:43,641 | INFO     | mean x: 1764229707.072442
[2025-11-27 20:16:20] 2025-11-27 19:15:43,641 | INFO     | mean y: 2845396.919342793
[2025-11-27 20:16:20] 2025-11-27 19:15:43,641 | INFO     | intersect: -9567144366.09476
[2025-11-27 20:16:20] 2025-11-27 19:15:43,643 | INFO     | chi2: 20.319791762963238
[2025-11-27 20:16:20] 2025-11-27 19:15:43,643 | INFO     | current chi2=20.319791762963238 (change=13.401271692592537 %)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,643 | INFO     | right removable region: 1338
[2025-11-27 20:16:20] 2025-11-27 19:15:43,645 | INFO     | sum of square deviations: 744423028671.9734
[2025-11-27 20:16:20] 2025-11-27 19:15:43,726 | INFO     | sum of deviations: 3024281995838.752
[2025-11-27 20:16:20] 2025-11-27 19:15:43,727 | INFO     | mean x: 1764230012.072442
[2025-11-27 20:16:20] 2025-11-27 19:15:43,727 | INFO     | mean y: 2847730.126213592
[2025-11-27 20:16:20] 2025-11-27 19:15:43,727 | INFO     | intersect: -7164487046.6437645
[2025-11-27 20:16:20] 2025-11-27 19:15:43,728 | INFO     | chi2: 18.52172936212324
[2025-11-27 20:16:20] 2025-11-27 19:15:43,729 | INFO     | current chi2=18.52172936212324 (change=21.06423985420133 %)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,729 | INFO     | left removable region: 10
[2025-11-27 20:16:20] 2025-11-27 19:15:43,731 | INFO     | sum of square deviations: 726226912757.2168
[2025-11-27 20:16:20] 2025-11-27 19:15:43,790 | INFO     | sum of deviations: 3072215292967.8896
[2025-11-27 20:16:20] 2025-11-27 19:15:43,790 | INFO     | mean x: 1764229981.5813253
[2025-11-27 20:16:20] 2025-11-27 19:15:43,790 | INFO     | mean y: 2867269.954819277
[2025-11-27 20:16:20] 2025-11-27 19:15:43,790 | INFO     | intersect: -7460494710.3228035
[2025-11-27 20:16:20] 2025-11-27 19:15:43,792 | INFO     | chi2: 10.628217804091472
[2025-11-27 20:16:20] 2025-11-27 19:15:43,792 | INFO     | current memory leak: 4.23 B/s (using 1328 data points, chi2=10.63)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | ..............................
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . Timing measurements:
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . get job = 0 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . initial setup = 17 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . payload setup = 166 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . stage-in = 0 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . payload execution = 82109 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,794 | INFO     | . stage-out = 5 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,795 | INFO     | . log creation = 2 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,795 | INFO     | ..............................
[2025-11-27 20:16:20] 2025-11-27 19:15:43,930 | INFO     | 
[2025-11-27 20:16:20] 2025-11-27 19:15:43,930 | INFO     | job summary report
[2025-11-27 20:16:20] 2025-11-27 19:15:43,930 | INFO     | --------------------------------------------------
[2025-11-27 20:16:20] 2025-11-27 19:15:43,930 | INFO     | PanDA job id: 6895352604
[2025-11-27 20:16:20] 2025-11-27 19:15:43,930 | INFO     | task id: 47556137
[2025-11-27 20:16:20] 2025-11-27 19:15:43,930 | INFO     | errors: (none)
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | pilot state: finished 
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | transexitcode: 0
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | exeerrorcode: 0
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | exeerrordiag: 
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | exitcode: 0
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | exitmsg: OK
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | cpuconsumptiontime: 309103 s
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | nevents: 1000
[2025-11-27 20:16:20] 2025-11-27 19:15:43,931 | INFO     | neventsw: 0
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | pid: 28732
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | pgrp: 28732
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | corecount: 8
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | event service: False
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | sizes: {0: 2284089, 1: 2284344, 2: 2284372, 12: 2284372, 23: 2284400, 34: 2284428, 45: 2284584, 55: 2284612, 66: 2284640, 77: 2284668, 88: 2284724, 98: 2285032, 10
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | --------------------------------------------------
[2025-11-27 20:16:20] 2025-11-27 19:15:43,932 | INFO     | 
[2025-11-27 20:16:20] 2025-11-27 19:15:43,933 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-11-27 20:16:20] 2025-11-27 19:15:44,000 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,000 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,000 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,000 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,001 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | job 6895352604 has completed (purged errors)
[2025-11-27 20:16:20] 2025-11-27 19:15:44,002 | INFO     | overall cleanup function is called
[2025-11-27 20:16:20] 2025-11-27 19:15:45,019 | INFO     | --- collectZombieJob: --- 10, [28732]
[2025-11-27 20:16:20] 2025-11-27 19:15:45,019 | INFO     | zombie collector waiting for pid 28732
[2025-11-27 20:16:20] 2025-11-27 19:15:45,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:16:20] 2025-11-27 19:15:45,019 | INFO     | collected zombie processes
[2025-11-27 20:16:20] 2025-11-27 19:15:45,019 | INFO     | will attempt to kill all subprocesses of pid=28732
[2025-11-27 20:16:20] 2025-11-27 19:15:45,148 | INFO     | process IDs to be killed: [28732] (in reverse order)
[2025-11-27 20:16:20] 2025-11-27 19:15:46,061 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:16:20] 2025-11-27 19:15:46,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:16:20] 2025-11-27 19:15:46,065 | INFO     | did not find any defunct processes belonging to 28732
[2025-11-27 20:16:20] 2025-11-27 19:15:46,067 | INFO     | did not find any defunct processes belonging to 28732
[2025-11-27 20:16:20] 2025-11-27 19:15:46,114 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:16:20] 2025-11-27 19:15:46,114 | INFO     | ready for new job
[2025-11-27 20:16:20] 2025-11-27 19:15:46,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:16:20] 2025-11-27 19:15:46,120 | INFO     | ***************************************
[2025-11-27 20:16:20] 2025-11-27 19:15:46,120 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:16:20] 2025-11-27 19:15:46,120 | INFO     | ***************************************
[2025-11-27 20:16:20] 2025-11-27 19:15:46,120 | INFO     | 
[2025-11-27 20:16:20] 2025-11-27 19:15:46,121 | INFO     | pilot is running in a VM
[2025-11-27 20:16:20] 2025-11-27 19:15:46,121 | INFO     | architecture information:
[2025-11-27 20:16:20] 2025-11-27 19:15:46,143 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:16:20] 2025-11-27 19:15:46,367 | INFO     | cat /etc/os-release:
[2025-11-27 20:16:20] NAME="CentOS Linux"
[2025-11-27 20:16:20] VERSION="7 (Core)"
[2025-11-27 20:16:20] ID="centos"
[2025-11-27 20:16:20] ID_LIKE="rhel fedora"
[2025-11-27 20:16:20] VERSION_ID="7"
[2025-11-27 20:16:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:16:20] ANSI_COLOR="0;31"
[2025-11-27 20:16:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:16:20] HOME_URL="https://www.centos.org/"
[2025-11-27 20:16:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:16:20] 
[2025-11-27 20:16:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:16:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:16:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:16:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:16:20] 
[2025-11-27 20:16:20] 2025-11-27 19:15:46,368 | INFO     | ***************************************
[2025-11-27 20:16:20] 2025-11-27 19:15:46,871 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-11-27 20:16:20] 2025-11-27 19:15:47,079 | INFO     | sufficient remaining disk space (495354642432 B)
[2025-11-27 20:16:20] 2025-11-27 19:15:47,079 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:16:20] 2025-11-27 19:15:47,079 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:16:20] 2025-11-27 19:15:47,080 | INFO     | update_server=False
[2025-11-27 20:16:20] 2025-11-27 19:15:47,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:16:20] 2025-11-27 19:15:47,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:16:20] 2025-11-27 19:15:47,081 | INFO     | aborting loop
[2025-11-27 20:16:20] 2025-11-27 19:15:47,287 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:16:20] 2025-11-27 19:15:47,696 | INFO     | all data control threads have been joined
[2025-11-27 20:16:20] 2025-11-27 19:15:48,021 | INFO     | all payload control threads have been joined
[2025-11-27 20:16:20] 2025-11-27 19:15:48,087 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:48,090 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:48,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:48,367 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:48,455 | INFO     | all job control threads have been joined
[2025-11-27 20:16:20] 2025-11-27 19:15:48,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:16:20] 2025-11-27 19:15:48,700 | INFO     | [job] validate thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:48,702 | INFO     | [data] control thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:48,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:16:20] 2025-11-27 19:15:49,027 | INFO     | [payload] control thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,105 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,212 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,243 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,329 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,375 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:16:20] 2025-11-27 19:15:49,460 | INFO     | [job] control thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:49,952 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:50,549 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:53,422 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:16:20] 2025-11-27 19:15:54,699 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661684442944)>', '<ExcThread(monitor, started 139661238322944)>']
[2025-11-27 20:16:20] 2025-11-27 19:15:59,725 | INFO     | all workflow threads have been joined
[2025-11-27 20:16:20] 2025-11-27 19:15:59,725 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:16:20] 2025-11-27 19:15:59,725 | INFO     | traces error code: 0
[2025-11-27 20:16:20] 2025-11-27 19:15:59,726 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:16:20] 2025-11-27 19:16:16,047 | INFO     | PID=22144 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 20:16:20] 2025-11-27 19:16:16,047 | INFO     | .. there are 9 such processes running
[2025-11-27 20:16:20] 2025-11-27 19:16:16,047 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:16:20] 2025-11-27 19:16:16,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:16:20] 2025-11-27 19:16:16,048 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:16:20] 2025-11-27 19:16:16,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:16:20] 2025-11-27 19:16:16,048 | INFO     | [monitor] control thread has ended
[2025-11-27 20:16:20] 2025-11-27 19:16:16,233 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:16:20] 2025-11-27 19:16:16,238 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:16:20] 2025-11-27 19:16:16,251 [wrapper] pilotpid: 22144
[2025-11-27 20:16:20] 2025-11-27 19:16:16,261 [wrapper] Pilot exit status: 0
[2025-11-27 20:16:20] 2025-11-27 19:16:16,323 [wrapper] pandaids: 6895352604
[2025-11-27 20:16:20] 2025-11-27 19:16:17,405 [wrapper] cleanup supervisor_pilot 28874 22145
[2025-11-27 20:16:20] 2025-11-27 19:16:17,493 [wrapper] Test setup, not cleaning
[2025-11-27 20:16:20] 2025-11-27 19:16:17,583 [wrapper] apfmon messages muted
[2025-11-27 20:16:20] 2025-11-27 19:16:17,679 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:16:20] 2025-11-27 19:16:17,748 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:16:20]  *** Error codes and diagnostics ***
[2025-11-27 20:16:20]     "exeErrorCode": 0,
[2025-11-27 20:16:20]     "exeErrorDiag": "",
[2025-11-27 20:16:20]     "pilotErrorCode": 0,
[2025-11-27 20:16:20]     "pilotErrorDiag": "",
[2025-11-27 20:16:20]  *** Listing of results directory ***
[2025-11-27 20:16:20] total 1323096
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc    576529 Nov 23 04:01 pilot3.tar.gz
[2025-11-27 20:16:20] -rwx------. 1 boinc boinc     36292 Nov 23 04:21 runpilot2-wrapper.sh
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc      5112 Nov 23 04:21 queuedata.json
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc       100 Nov 26 21:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:16:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 21:15 run_atlas
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc       105 Nov 26 21:15 job.xml
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc      6392 Nov 26 21:15 init_data.xml
[2025-11-27 20:16:20] -rw-r--r--. 2 boinc boinc 411009094 Nov 26 21:15 EVNT.47483658._000595.pool.root.1
[2025-11-27 20:16:20] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:15 start_atlas.sh
[2025-11-27 20:16:20] drwxrwx--x. 2 boinc boinc        68 Nov 26 21:15 shared
[2025-11-27 20:16:20] -rw-r--r--. 2 boinc boinc    590101 Nov 26 21:15 input.tar.gz
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc         0 Nov 26 21:15 boinc_lockfile
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc      2786 Nov 26 21:15 pandaJob.out
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc    991538 Nov 26 21:19 agis_schedconf.cvmfs.json
[2025-11-27 20:16:20] drwx------. 5 boinc boinc      4096 Nov 26 21:19 pilot3
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc       533 Nov 27 19:56 boinc_task_state.xml
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc 913010520 Nov 27 20:12 HITS.47556137._005908.pool.root.1
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc      1028 Nov 27 20:14 memory_monitor_summary.json
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc   1516240 Nov 27 20:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc   2440862 Nov 27 20:14 log.47556137._005908.job.log.tgz.1
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc        95 Nov 27 20:15 pilot_heartbeat.json
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc      8642 Nov 27 20:15 heartbeat.json
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc       820 Nov 27 20:16 pilotlog.txt
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc  11021649 Nov 27 20:16 log.47556137._005908.job.log.1
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc       353 Nov 27 20:16 output.list
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc      8192 Nov 27 20:16 boinc_mmap_file
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc        29 Nov 27 20:16 wrapper_checkpoint.txt
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc       620 Nov 27 20:16 runtime_log
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc  13486080 Nov 27 20:16 result.tar.gz
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc      8833 Nov 27 20:16 runtime_log.err
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc       662 Nov 27 20:16 CH8LDmXqFh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMaKKDmiavWtm.diag
[2025-11-27 20:16:20] -rw-r--r--. 1 boinc boinc     21525 Nov 27 20:16 stderr.txt
[2025-11-27 20:16:20] HITS file was successfully produced:
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc 913010520 Nov 27 20:12 shared/HITS.pool.root.1
[2025-11-27 20:16:20]  *** Contents of shared directory: ***
[2025-11-27 20:16:20] total 1306760
[2025-11-27 20:16:20] -rw-r--r--. 2 boinc boinc 411009094 Nov 26 21:15 ATLAS.root_0
[2025-11-27 20:16:20] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:15 start_atlas.sh
[2025-11-27 20:16:20] -rw-r--r--. 2 boinc boinc    590101 Nov 26 21:15 input.tar.gz
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc 913010520 Nov 27 20:12 HITS.pool.root.1
[2025-11-27 20:16:20] -rw-------. 1 boinc boinc  13486080 Nov 27 20:16 result.tar.gz
20:16:22 (18348): run_atlas exited; CPU time 309659.974172
20:16:22 (18348): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN