Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:03:43 (24008): wrapper (7.7.26015): starting
03:03:43 (24008): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:03:43] Arguments: --nthreads 8
[2025-11-27 03:03:43] Threads: 8
[2025-11-27 03:03:43] Checking for CVMFS
[2025-11-27 03:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:03:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:03:46] 2.11.2.0 17769 286006 139728 153342 2 85 21026277 25165824 1288 130560 10 134447442 99.880 82766584 2649 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 03:03:46] CVMFS is ok
[2025-11-27 03:03:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:03:46] Checking for apptainer binary...
[2025-11-27 03:03:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:03:46] Running /usr/bin/apptainer --version
[2025-11-27 03:03:46] apptainer version 1.3.2-1.el7
[2025-11-27 03:03:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:03:59] cg-vwn290.simple-grid.lan
[2025-11-27 03:03:59] apptainer works
[2025-11-27 03:03:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:03:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:03:59] Starting ATLAS job with PandaID=6895361201
[2025-11-27 03:03:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:03:39]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:03:39] 2025-11-28 01:02:52,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:03:39] 2025-11-28 01:02:53,464 | INFO     | time since job start (82503s) is within the limit (172800.0s)
[2025-11-28 02:03:39] 2025-11-28 01:02:55,199 | INFO     | monitor loop #5552: job 0:6895361201 is in state 'finished'
[2025-11-28 02:03:39] 2025-11-28 01:02:55,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:03:39] 2025-11-28 01:02:55,475 | INFO     | time since job start (82505s) is within the limit (172800.0s)
[2025-11-28 02:03:39] 2025-11-28 01:02:56,712 | INFO     | PID=27827 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:03:39] 2025-11-28 01:02:56,713 | INFO     | .. there are 9 such processes running
[2025-11-28 02:03:39] 2025-11-28 01:02:57,708 | INFO     | monitor loop #5553: job 0:6895361201 is in state 'finished'
[2025-11-28 02:03:39] 2025-11-28 01:02:57,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:03:39] 2025-11-28 01:02:57,718 | INFO     | time since job start (82507s) is within the limit (172800.0s)
[2025-11-28 02:03:39] 2025-11-28 01:02:59,726 | INFO     | time since job start (82509s) is within the limit (172800.0s)
[2025-11-28 02:03:39] 2025-11-28 01:03:00,215 | INFO     | monitor loop #5554: job 0:6895361201 is in state 'finished'
[2025-11-28 02:03:39] 2025-11-28 01:03:00,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,688 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 02:03:39] 2025-11-28 01:03:01,690 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 02:03:39] 2025-11-28 01:03:01,692 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895361201/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,693 | INFO     | extracted standard info from prmon json
[2025-11-28 02:03:39] 2025-11-28 01:03:01,693 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:03:39] 2025-11-28 01:03:01,693 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:03:39] 2025-11-28 01:03:01,717 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:03:39] 2025-11-28 01:03:01,719 | INFO     | sum of square deviations: 751114215903.1005
[2025-11-28 02:03:39] 2025-11-28 01:03:01,751 | INFO     | time since job start (82511s) is within the limit (172800.0s)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,774 | INFO     | sum of deviations: 2690167487342.405
[2025-11-28 02:03:39] 2025-11-28 01:03:01,775 | INFO     | mean x: 1764250722.076694
[2025-11-28 02:03:39] 2025-11-28 01:03:01,775 | INFO     | mean y: 2843368.0833953833
[2025-11-28 02:03:39] 2025-11-28 01:03:01,775 | INFO     | intersect: -6315942552.303673
[2025-11-28 02:03:39] 2025-11-28 01:03:01,776 | INFO     | chi2: 19.665847003705903
[2025-11-28 02:03:39] 2025-11-28 01:03:01,778 | INFO     | sum of square deviations: 742756630449.7828
[2025-11-28 02:03:39] 2025-11-28 01:03:01,833 | INFO     | sum of deviations: 3134384125555.171
[2025-11-28 02:03:39] 2025-11-28 01:03:01,833 | INFO     | mean x: 1764250569.5807176
[2025-11-28 02:03:39] 2025-11-28 01:03:01,833 | INFO     | mean y: 2851472.5956651717
[2025-11-28 02:03:39] 2025-11-28 01:03:01,833 | INFO     | intersect: -7442169887.155546
[2025-11-28 02:03:39] 2025-11-28 01:03:01,835 | INFO     | chi2: 16.463852286931075
[2025-11-28 02:03:39] 2025-11-28 01:03:01,835 | INFO     | current chi2=16.463852286931075 (change=16.28200766624205 %)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,835 | INFO     | right removable region: 1337
[2025-11-28 02:03:39] 2025-11-28 01:03:01,837 | INFO     | sum of square deviations: 742755748389.7823
[2025-11-28 02:03:39] 2025-11-28 01:03:01,884 | INFO     | sum of deviations: 2128624970251.309
[2025-11-28 02:03:39] 2025-11-28 01:03:01,884 | INFO     | mean x: 1764250874.5807176
[2025-11-28 02:03:39] 2025-11-28 01:03:01,885 | INFO     | mean y: 2853612.8258594917
[2025-11-28 02:03:39] 2025-11-28 01:03:01,885 | INFO     | intersect: -5053220976.38009
[2025-11-28 02:03:39] 2025-11-28 01:03:01,886 | INFO     | chi2: 15.03167090743809
[2025-11-28 02:03:39] 2025-11-28 01:03:01,886 | INFO     | current chi2=15.03167090743809 (change=23.56458938887571 %)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,887 | INFO     | left removable region: 10
[2025-11-28 02:03:39] 2025-11-28 01:03:01,888 | INFO     | sum of square deviations: 724586913596.3301
[2025-11-28 02:03:39] 2025-11-28 01:03:01,949 | INFO     | sum of deviations: 2224597050153.737
[2025-11-28 02:03:39] 2025-11-28 01:03:01,950 | INFO     | mean x: 1764250844.089676
[2025-11-28 02:03:39] 2025-11-28 01:03:01,950 | INFO     | mean y: 2871830.615674454
[2025-11-28 02:03:39] 2025-11-28 01:03:01,950 | INFO     | intersect: -5413658815.809475
[2025-11-28 02:03:39] 2025-11-28 01:03:01,952 | INFO     | chi2: 8.228892581894854
[2025-11-28 02:03:39] 2025-11-28 01:03:01,952 | INFO     | current memory leak: 3.07 B/s (using 1327 data points, chi2=8.23)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | ..............................
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | . Timing measurements:
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | . get job = 0 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | . initial setup = 9 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | . payload setup = 154 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,953 | INFO     | . stage-in = 0 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,954 | INFO     | . payload execution = 82060 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,954 | INFO     | . stage-out = 5 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,954 | INFO     | . log creation = 1 s
[2025-11-28 02:03:39] 2025-11-28 01:03:01,954 | INFO     | ..............................
[2025-11-28 02:03:39] 2025-11-28 01:03:02,441 | INFO     | 
[2025-11-28 02:03:39] 2025-11-28 01:03:02,441 | INFO     | job summary report
[2025-11-28 02:03:39] 2025-11-28 01:03:02,441 | INFO     | --------------------------------------------------
[2025-11-28 02:03:39] 2025-11-28 01:03:02,441 | INFO     | PanDA job id: 6895361201
[2025-11-28 02:03:39] 2025-11-28 01:03:02,441 | INFO     | task id: 47556149
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | errors: (none)
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | pilot state: finished 
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | transexitcode: 0
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | exeerrorcode: 0
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | exeerrordiag: 
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | exitcode: 0
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | exitmsg: OK
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | cpuconsumptiontime: 310562 s
[2025-11-28 02:03:39] 2025-11-28 01:03:02,442 | INFO     | nevents: 1000
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | neventsw: 0
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | pid: 2007
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | pgrp: 2007
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | corecount: 8
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | event service: False
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | sizes: {0: 2283987, 1: 2284242, 2: 2284270, 13: 2284270, 23: 2284326, 34: 2284354, 45: 2284510, 56: 2284538, 66: 2284566, 77: 2284594, 88: 2284650, 92: 2285220, 98
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | --------------------------------------------------
[2025-11-28 02:03:39] 2025-11-28 01:03:02,443 | INFO     | 
[2025-11-28 02:03:39] 2025-11-28 01:03:02,444 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-28 02:03:39] 2025-11-28 01:03:02,470 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,471 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,472 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:03:39] 2025-11-28 01:03:02,473 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,473 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:03:39] 2025-11-28 01:03:02,473 | INFO     | job 6895361201 has completed (purged errors)
[2025-11-28 02:03:39] 2025-11-28 01:03:02,473 | INFO     | overall cleanup function is called
[2025-11-28 02:03:39] 2025-11-28 01:03:03,490 | INFO     | --- collectZombieJob: --- 10, [2007]
[2025-11-28 02:03:39] 2025-11-28 01:03:03,490 | INFO     | zombie collector waiting for pid 2007
[2025-11-28 02:03:39] 2025-11-28 01:03:03,490 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:03:39] 2025-11-28 01:03:03,490 | INFO     | collected zombie processes
[2025-11-28 02:03:39] 2025-11-28 01:03:03,491 | INFO     | will attempt to kill all subprocesses of pid=2007
[2025-11-28 02:03:39] 2025-11-28 01:03:03,603 | INFO     | process IDs to be killed: [2007] (in reverse order)
[2025-11-28 02:03:39] 2025-11-28 01:03:03,935 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:03:39] 2025-11-28 01:03:03,935 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:03:39] 2025-11-28 01:03:03,938 | INFO     | did not find any defunct processes belonging to 2007
[2025-11-28 02:03:39] 2025-11-28 01:03:03,942 | INFO     | did not find any defunct processes belonging to 2007
[2025-11-28 02:03:39] 2025-11-28 01:03:03,944 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:03:39] 2025-11-28 01:03:03,944 | INFO     | ready for new job
[2025-11-28 02:03:39] 2025-11-28 01:03:03,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:03:39] 2025-11-28 01:03:03,950 | INFO     | ***************************************
[2025-11-28 02:03:39] 2025-11-28 01:03:03,950 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:03:39] 2025-11-28 01:03:03,950 | INFO     | ***************************************
[2025-11-28 02:03:39] 2025-11-28 01:03:03,950 | INFO     | 
[2025-11-28 02:03:39] 2025-11-28 01:03:03,951 | INFO     | pilot is running in a VM
[2025-11-28 02:03:39] 2025-11-28 01:03:03,951 | INFO     | architecture information:
[2025-11-28 02:03:39] 2025-11-28 01:03:03,951 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:03:39] 2025-11-28 01:03:04,146 | INFO     | cat /etc/os-release:
[2025-11-28 02:03:39] NAME="CentOS Linux"
[2025-11-28 02:03:39] VERSION="7 (Core)"
[2025-11-28 02:03:39] ID="centos"
[2025-11-28 02:03:39] ID_LIKE="rhel fedora"
[2025-11-28 02:03:39] VERSION_ID="7"
[2025-11-28 02:03:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:03:39] ANSI_COLOR="0;31"
[2025-11-28 02:03:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:03:39] HOME_URL="https://www.centos.org/"
[2025-11-28 02:03:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:03:39] 
[2025-11-28 02:03:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:03:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:03:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:03:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:03:39] 
[2025-11-28 02:03:39] 2025-11-28 01:03:04,147 | INFO     | ***************************************
[2025-11-28 02:03:39] 2025-11-28 01:03:04,650 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-28 02:03:39] 2025-11-28 01:03:04,925 | INFO     | sufficient remaining disk space (495523463168 B)
[2025-11-28 02:03:39] 2025-11-28 01:03:04,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:03:39] 2025-11-28 01:03:04,926 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:03:39] 2025-11-28 01:03:04,926 | INFO     | update_server=False
[2025-11-28 02:03:39] 2025-11-28 01:03:04,926 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:03:39] 2025-11-28 01:03:04,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:03:39] 2025-11-28 01:03:05,232 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 02:03:39] 2025-11-28 01:03:05,232 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 02:03:39] 2025-11-28 01:03:05,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:03:39] 2025-11-28 01:03:05,232 | INFO     | will abort loop
[2025-11-28 02:03:39] 2025-11-28 01:03:05,338 | INFO     | all data control threads have been joined
[2025-11-28 02:03:39] 2025-11-28 01:03:05,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:03:39] 2025-11-28 01:03:05,795 | INFO     | all payload control threads have been joined
[2025-11-28 02:03:39] 2025-11-28 01:03:05,932 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:05,951 | INFO     | all job control threads have been joined
[2025-11-28 02:03:39] 2025-11-28 01:03:06,090 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,238 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,344 | INFO     | [data] control thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,495 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,535 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,740 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,766 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,783 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,801 | INFO     | [payload] control thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,813 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,942 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:06,959 | INFO     | [job] control thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:07,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:03:39] 2025-11-28 01:03:07,431 | INFO     | [job] validate thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:08,081 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:09,413 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:03:39] 2025-11-28 01:03:14,071 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:03:39] 2025-11-28 01:03:14,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373354866496)>', '<ExcThread(monitor, started 140372617459456)>']
[2025-11-28 02:03:39] 2025-11-28 01:03:19,783 | INFO     | all workflow threads have been joined
[2025-11-28 02:03:39] 2025-11-28 01:03:19,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:03:39] 2025-11-28 01:03:19,783 | INFO     | traces error code: 0
[2025-11-28 02:03:39] 2025-11-28 01:03:19,784 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:03:39] 2025-11-28 01:03:34,910 | INFO     | PID=27827 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:03:39] 2025-11-28 01:03:34,911 | INFO     | .. there are 9 such processes running
[2025-11-28 02:03:39] 2025-11-28 01:03:34,911 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:03:39] 2025-11-28 01:03:34,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:03:39] 2025-11-28 01:03:34,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:03:39] 2025-11-28 01:03:34,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:03:39] 2025-11-28 01:03:34,912 | INFO     | [monitor] control thread has ended
[2025-11-28 02:03:39] 2025-11-28 01:03:35,246 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:03:39] 2025-11-28 01:03:35,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:03:39] 2025-11-28 01:03:35,392 [wrapper] pilotpid: 27827
[2025-11-28 02:03:39] 2025-11-28 01:03:35,532 [wrapper] Pilot exit status: 0
[2025-11-28 02:03:39] 2025-11-28 01:03:35,967 [wrapper] pandaids: 6895361201
[2025-11-28 02:03:39] 2025-11-28 01:03:36,660 [wrapper] cleanup supervisor_pilot  1991 27828
[2025-11-28 02:03:39] 2025-11-28 01:03:36,701 [wrapper] Test setup, not cleaning
[2025-11-28 02:03:39] 2025-11-28 01:03:36,755 [wrapper] apfmon messages muted
[2025-11-28 02:03:39] 2025-11-28 01:03:36,839 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:03:39] 2025-11-28 01:03:36,949 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:03:39]  *** Error codes and diagnostics ***
[2025-11-28 02:03:39]     "exeErrorCode": 0,
[2025-11-28 02:03:39]     "exeErrorDiag": "",
[2025-11-28 02:03:39]     "pilotErrorCode": 0,
[2025-11-28 02:03:39]     "pilotErrorDiag": "",
[2025-11-28 02:03:39]  *** Listing of results directory ***
[2025-11-28 02:03:39] total 1314780
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc    576529 Nov 23 14:42 pilot3.tar.gz
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc      5112 Nov 23 14:56 queuedata.json
[2025-11-28 02:03:39] -rwx------. 1 boinc boinc     36292 Nov 23 14:56 runpilot2-wrapper.sh
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc       100 Nov 27 03:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:03:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 03:03 run_atlas
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc       105 Nov 27 03:03 job.xml
[2025-11-28 02:03:39] -rw-r--r--. 2 boinc boinc 411872283 Nov 27 03:03 EVNT.47483658._001167.pool.root.1
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc      6392 Nov 27 03:03 init_data.xml
[2025-11-28 02:03:39] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:03 start_atlas.sh
[2025-11-28 02:03:39] drwxrwx--x. 2 boinc boinc        68 Nov 27 03:03 shared
[2025-11-28 02:03:39] -rw-r--r--. 2 boinc boinc    590103 Nov 27 03:03 input.tar.gz
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc         0 Nov 27 03:03 boinc_lockfile
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc      2784 Nov 27 03:03 pandaJob.out
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc    991530 Nov 27 03:07 agis_schedconf.cvmfs.json
[2025-11-28 02:03:39] drwx------. 5 boinc boinc      4096 Nov 27 03:07 pilot3
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc       533 Nov 28 01:37 boinc_task_state.xml
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc 903730766 Nov 28 02:00 HITS.47556149._001534.pool.root.1
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc      1028 Nov 28 02:01 memory_monitor_summary.json
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc   1516240 Nov 28 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc   2431102 Nov 28 02:01 log.47556149._001534.job.log.tgz.1
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc      8630 Nov 28 02:03 heartbeat.json
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc      8192 Nov 28 02:03 boinc_mmap_file
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc        29 Nov 28 02:03 wrapper_checkpoint.txt
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc        95 Nov 28 02:03 pilot_heartbeat.json
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc       820 Nov 28 02:03 pilotlog.txt
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc  10982971 Nov 28 02:03 log.47556149._001534.job.log.1
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc       353 Nov 28 02:03 output.list
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc       620 Nov 28 02:03 runtime_log
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc  13434880 Nov 28 02:03 result.tar.gz
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc      8833 Nov 28 02:03 runtime_log.err
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc       662 Nov 28 02:03 48HMDm9kPh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHxKKDmYVcvQn.diag
[2025-11-28 02:03:39] -rw-r--r--. 1 boinc boinc     21484 Nov 28 02:03 stderr.txt
[2025-11-28 02:03:39] HITS file was successfully produced:
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc 903730766 Nov 28 02:00 shared/HITS.pool.root.1
[2025-11-28 02:03:39]  *** Contents of shared directory: ***
[2025-11-28 02:03:39] total 1298488
[2025-11-28 02:03:39] -rw-r--r--. 2 boinc boinc 411872283 Nov 27 03:03 ATLAS.root_0
[2025-11-28 02:03:39] -rw-r--r--. 2 boinc boinc     15847 Nov 27 03:03 start_atlas.sh
[2025-11-28 02:03:39] -rw-r--r--. 2 boinc boinc    590103 Nov 27 03:03 input.tar.gz
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc 903730766 Nov 28 02:00 HITS.pool.root.1
[2025-11-28 02:03:39] -rw-------. 1 boinc boinc  13434880 Nov 28 02:03 result.tar.gz
02:03:41 (24008): run_atlas exited; CPU time 311126.972531
02:03:41 (24008): called boinc_finish(0)

</stderr_txt>
]]>

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