Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-24 10:48:18 (396): vboxwrapper version 26210
2025-11-24 10:48:18 (396): BOINC client version: 8.0.2
2025-11-24 10:48:18 (396): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-11-24 10:48:19 (396): Successfully copied 'init_data.xml' to the shared directory.
2025-11-24 10:48:19 (396): Create VM. (boinc_a9eea2e5daee4435, slot#0)
2025-11-24 10:48:20 (396): Setting Memory Size for VM. (4600MB)
2025-11-24 10:48:20 (396): Setting CPU Count for VM. (6)
2025-11-24 10:48:20 (396): Setting Chipset Options for VM.
2025-11-24 10:48:21 (396): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-24 10:48:21 (396): Setting Boot Options for VM.
2025-11-24 10:48:21 (396): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-24 10:48:22 (396): Enabling VM Network Access.
2025-11-24 10:48:22 (396): Disabling USB Support for VM.
2025-11-24 10:48:22 (396): Disabling COM Port Support for VM.
2025-11-24 10:48:23 (396): Disabling LPT Port Support for VM.
2025-11-24 10:48:23 (396): Disabling Audio Support for VM.
2025-11-24 10:48:23 (396): Disabling Clipboard Support for VM.
2025-11-24 10:48:24 (396): Disabling Drag and Drop Support for VM.
2025-11-24 10:48:24 (396): Adding storage controller(s) to VM.
2025-11-24 10:48:24 (396): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-24 10:48:27 (396): Adding VirtualBox Guest Additions to VM.
2025-11-24 10:48:27 (396): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-24 10:48:27 (396): forwarding host port 56585 to guest port 80
2025-11-24 10:48:28 (396): Enabling remote desktop for VM.
2025-11-24 10:48:28 (396): Required extension pack not installed, remote desktop not enabled.
2025-11-24 10:48:28 (396): Enabling shared directory for VM.
2025-11-24 10:48:29 (396): Starting VM using VBoxManage interface. (boinc_a9eea2e5daee4435, slot#0)
2025-11-24 10:48:36 (396): Successfully started VM. (PID = '8864')
2025-11-24 10:48:36 (396): Reporting VM Process ID to BOINC.
2025-11-24 10:48:36 (396): Guest Log: BIOS: VirtualBox 7.0.12
2025-11-24 10:48:36 (396): Guest Log: CPUID EDX: 0x178bfbff
2025-11-24 10:48:36 (396): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-24 10:48:36 (396): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-24 10:48:36 (396): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-24 10:48:36 (396): Detected: Web Application Enabled (http://localhost:56585)
2025-11-24 10:48:37 (396): Preference change detected
2025-11-24 10:48:37 (396): Setting CPU throttle for VM. (90%)
2025-11-24 10:48:37 (396): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 10:48:39 (396): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-24 10:48:39 (396): Guest Log: BIOS: Booting from Hard Disk...
2025-11-24 10:48:42 (396): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-24 10:48:42 (396): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-24 10:48:42 (396): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-24 10:48:50 (396): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-24 10:48:50 (396): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-24 10:48:57 (396): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000280 main     Log opened 2025-11-24T10:48:54.710921000Z
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000415 main     OS Product: Linux
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000455 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000493 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000533 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000534 main     Process ID: 1338
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.000535 main     Package type: LINUX_64BITS_GENERIC
2025-11-24 10:48:57 (396): Guest Log: 00:00:00.003177 main     5.2.32 r132073 started. Verbose level = 0
2025-11-24 10:48:57 (396): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-24 10:48:57 (396): Guest Log: [INFO] Mounting shared directory
2025-11-24 10:48:57 (396): Guest Log: [INFO] Checking for init_data.xml
2025-11-24 10:49:02 (396): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-24 10:49:02 (396): Guest Log: [INFO] Detected branch: prod
2025-11-24 10:49:03 (396): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-24 10:49:03 (396): Guest Log: Copying input files
2025-11-24 10:49:06 (396): Guest Log: Copied input files into RunAtlas.
2025-11-24 10:49:06 (396): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-24 10:49:06 (396): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-24 10:49:06 (396): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-24 10:49:06 (396): Guest Log: Further information can be found at the LHC@home message board.
2025-11-24 10:49:07 (396): Guest Log: 00:00:10.024866 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 862 510 000ns (GuestNow=1 763 977 746 857 958 000 ns GuestLast=1 763 981 334 720 468 000 ns fSetTimeLastLoop=true )
2025-11-24 10:49:18 (396): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-24 10:49:18 (396): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-24 10:49:18 (396): Guest Log: 2.6.3.0 1613 0 30184 153240 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-24 10:49:20 (396): Guest Log: copied the webapp to /var/www
2025-11-24 10:49:20 (396): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-24 10:49:20 (396): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-24 10:49:25 (396): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-24 10:49:25 (396): Guest Log:  *** Starting ATLAS job. (PandaID=6895359074 taskID=47556137) ***
2025-11-24 12:28:59 (396): Status Report: Elapsed Time: '6000.000000'
2025-11-24 12:28:59 (396): Status Report: CPU Time: '27789.343750'
2025-11-24 14:09:22 (396): Status Report: Elapsed Time: '12000.000000'
2025-11-24 14:09:22 (396): Status Report: CPU Time: '59620.531250'
2025-11-24 15:49:44 (396): Status Report: Elapsed Time: '18000.000000'
2025-11-24 15:49:44 (396): Status Report: CPU Time: '91453.484375'
2025-11-24 17:30:06 (396): Status Report: Elapsed Time: '24000.000000'
2025-11-24 17:30:06 (396): Status Report: CPU Time: '123277.703125'
2025-11-24 19:10:28 (396): Status Report: Elapsed Time: '30000.000000'
2025-11-24 19:10:28 (396): Status Report: CPU Time: '155115.968750'
2025-11-24 20:50:51 (396): Status Report: Elapsed Time: '36000.000000'
2025-11-24 20:50:51 (396): Status Report: CPU Time: '186953.468750'
2025-11-24 22:31:13 (396): Status Report: Elapsed Time: '42000.000000'
2025-11-24 22:31:13 (396): Status Report: CPU Time: '218784.437500'
2025-11-25 00:11:35 (396): Status Report: Elapsed Time: '48000.000000'
2025-11-25 00:11:35 (396): Status Report: CPU Time: '250617.953125'
2025-11-25 01:51:57 (396): Status Report: Elapsed Time: '54000.000000'
2025-11-25 01:51:57 (396): Status Report: CPU Time: '282445.984375'
2025-11-25 03:32:29 (396): Status Report: Elapsed Time: '60000.000000'
2025-11-25 03:32:29 (396): Status Report: CPU Time: '314336.375000'
2025-11-25 05:12:51 (396): Status Report: Elapsed Time: '66000.000000'
2025-11-25 05:12:51 (396): Status Report: CPU Time: '346174.671875'
2025-11-25 06:44:30 (396): Guest Log:  *** Job finished ***
2025-11-25 06:44:30 (396): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:05,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:05,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:22,485 | INFO     | [monitor] cgroup control has ended
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:24,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140685837989696)>', '<ExcThread(monitor, started 140684807894784)>']
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:24,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:24,663 | INFO     | [monitor] control thread has ended
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,379 | INFO     | all workflow threads have been joined
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,379 | INFO     | end of generic workflow (traces error code: 0)
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,379 | INFO     | traces error code: 0
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,525 [wrapper] ==== pilot stdout END ====
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,533 [wrapper] ==== wrapper stdout RESUME ====
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,542 [wrapper] pilotpid: 6043
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,551 [wrapper] Pilot exit status: 0
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,577 [wrapper] pandaids: 6895359074
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,621 [wrapper] cleanup supervisor_pilot  5579 6044
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,634 [wrapper] Test setup, not cleaning
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,643 [wrapper] apfmon messages muted
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,651 [wrapper] ==== wrapper stdout END ====
2025-11-25 06:44:30 (396): Guest Log: 2025-11-25 05:44:29,659 [wrapper] ==== wrapper stderr END ====
2025-11-25 06:44:30 (396): Guest Log:  *** Error codes and diagnostics ***
2025-11-25 06:44:30 (396): Guest Log:     "exeErrorCode": 0,
2025-11-25 06:44:30 (396): Guest Log:     "exeErrorDiag": "",
2025-11-25 06:44:30 (396): Guest Log:     "pilotErrorCode": 0,
2025-11-25 06:44:30 (396): Guest Log:     "pilotErrorDiag": "",
2025-11-25 06:44:30 (396): Guest Log:  *** Listing of results directory ***
2025-11-25 06:44:30 (396): Guest Log: total 920792
2025-11-25 06:44:30 (396): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 13:09 pilot3.tar.gz
2025-11-25 06:44:30 (396): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 13:18 queuedata.json
2025-11-25 06:44:30 (396): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 13:19 runpilot2-wrapper.sh
2025-11-25 06:44:30 (396): Guest Log: -rwxr-xr-x. 1 atlas atlas      8931 Nov 24 09:49 init_data.xml
2025-11-25 06:44:30 (396): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 24 09:49 start_atlas.sh
2025-11-25 06:44:30 (396): Guest Log: -rwxr-xr-x. 1 atlas atlas    590102 Nov 24 09:49 input.tar.gz
2025-11-25 06:44:30 (396): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 24 09:49 EVNT.47483658._000745.pool.root.1 -> /data/./ATLAS.root_0
2025-11-25 06:44:30 (396): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 24 09:49 pandaJob.out
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas    989824 Nov 24 09:51 agis_schedconf.cvmfs.json
2025-11-25 06:44:30 (396): Guest Log: drwx------. 5 atlas atlas      4096 Nov 24 09:52 pilot3
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas 916370618 Nov 25 05:42 HITS.47556137._007407.pool.root.1
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 25 05:43 memory_monitor_summary.json
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 25 05:43 agis_ddmendpoints.agis.ALL.json
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas   2064375 Nov 25 05:43 log.47556137._007407.job.log.tgz.1
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas      8634 Nov 25 05:43 heartbeat.json
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas        95 Nov 25 05:44 pilot_heartbeat.json
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 25 05:44 pilotlog.txt
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas   9273334 Nov 25 05:44 log.47556137._007407.job.log.1
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas       353 Nov 25 05:44 output.list
2025-11-25 06:44:30 (396): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 25 05:44 runtime_log
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas  11356160 Nov 25 05:44 result.tar.gz
2025-11-25 06:44:30 (396): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Nov 25 05:44 runtime_log.err
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas       668 Nov 25 05:44 qQQODm3APh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmivKKDm95c4Lm.diag
2025-11-25 06:44:30 (396): Guest Log: Looking for outputfile HITS.47556137._007407.pool.root.1
2025-11-25 06:44:30 (396): Guest Log: HITS file was successfully produced
2025-11-25 06:44:30 (396): Guest Log: -rw-------. 1 atlas atlas 916370618 Nov 25 05:42 /home/atlas/RunAtlas/HITS.47556137._007407.pool.root.1
2025-11-25 06:44:36 (396): Guest Log: Successfully finished the ATLAS job!
2025-11-25 06:44:36 (396): Guest Log: Copying the results back to the shared directory!
2025-11-25 06:44:37 (396): Guest Log:  *** Contents of shared directory: ***
2025-11-25 06:44:37 (396): Guest Log: total 1306700
2025-11-25 06:44:37 (396): Guest Log: -rwxrwxrwx. 1 root root 409703709 Nov 24 09:48 ATLAS.root_0
2025-11-25 06:44:37 (396): Guest Log: -rwxrwxrwx. 1 root root 916370618 Nov 25 05:44 HITS.pool.root.1
2025-11-25 06:44:37 (396): Guest Log: -rwxrwxrwx. 1 root root      8931 Nov 24 09:48 init_data.xml
2025-11-25 06:44:37 (396): Guest Log: -rwxrwxrwx. 1 root root    590102 Nov 24 09:19 input.tar.gz
2025-11-25 06:44:37 (396): Guest Log: -rwxrwxrwx. 1 root root  11356160 Nov 25 05:44 result.tar.gz
2025-11-25 06:44:37 (396): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 24 09:19 start_atlas.sh
2025-11-25 06:44:37 (396): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-25 06:44:37 (396): VM Completion File Detected.
2025-11-25 06:44:37 (396): Powering off VM.
2025-11-25 06:44:38 (396): Successfully stopped VM.
2025-11-25 06:44:38 (396): Deregistering VM. (boinc_a9eea2e5daee4435, slot#0)
2025-11-25 06:44:38 (396): Removing network bandwidth throttle group from VM.
2025-11-25 06:44:39 (396): Removing VM from VirtualBox.
2025-11-25 06:44:44 (396): called boinc_finish(0)

</stderr_txt>
]]>

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