Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:06:28 (1654405): wrapper (7.7.26015): starting
10:06:28 (1654405): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 10:06:28] Arguments: --nthreads 3
[2025-11-24 10:06:28] Threads: 3
[2025-11-24 10:06:28] Checking for CVMFS
[2025-11-24 10:06:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:06:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:06:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:06:28] 2.9.2.0 154488 561 67376 153239 0 88 34977737 36864000 0 130560 0 4481958 99.999 17092 9564 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 10:06:28] CVMFS is ok
[2025-11-24 10:06:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:06:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:06:28] Further information can be found at the LHC@home message board.
[2025-11-24 10:06:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:06:28] Checking for apptainer binary...
[2025-11-24 10:06:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:06:28] Running /usr/bin/apptainer --version
[2025-11-24 10:06:28] apptainer version 1.4.1-1.1
[2025-11-24 10:06:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:06:28] thA335
[2025-11-24 10:06:28] apptainer works
[2025-11-24 10:06:28] Set ATHENA_PROC_NUMBER=3
[2025-11-24 10:06:28] Set ATHENA_CORE_NUMBER=3
[2025-11-24 10:06:28] Starting ATLAS job with PandaID=6895350910
[2025-11-24 10:06:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:10:44]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:10:44] 2025-11-24 09:09:49,275 | INFO     | 
[2025-11-24 10:10:44] 2025-11-24 09:09:49,275 | INFO     | architecture information:
[2025-11-24 10:10:44] 2025-11-24 09:09:49,276 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:10:44] 2025-11-24 09:09:49,286 | INFO     | cat /etc/os-release:
[2025-11-24 10:10:44] NAME="CentOS Linux"
[2025-11-24 10:10:44] VERSION="7 (Core)"
[2025-11-24 10:10:44] ID="centos"
[2025-11-24 10:10:44] ID_LIKE="rhel fedora"
[2025-11-24 10:10:44] VERSION_ID="7"
[2025-11-24 10:10:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:10:44] ANSI_COLOR="0;31"
[2025-11-24 10:10:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:10:44] HOME_URL="https://www.centos.org/"
[2025-11-24 10:10:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:10:44] 
[2025-11-24 10:10:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:10:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:10:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:10:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:10:44] 
[2025-11-24 10:10:44] 2025-11-24 09:09:49,287 | INFO     | ***************************************
[2025-11-24 10:10:44] 2025-11-24 09:09:49,790 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | INFO     | sufficient remaining disk space (826645938176 B)
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | INFO     | update_server=False
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:10:44] 2025-11-24 09:09:49,803 | INFO     | aborting loop
[2025-11-24 10:10:44] 2025-11-24 09:09:50,606 | INFO     | all data control threads have been joined
[2025-11-24 10:10:44] 2025-11-24 09:09:50,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:10:44] 2025-11-24 09:09:50,809 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:50,810 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:50,810 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:50,924 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:51,067 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:51,222 | INFO     | all payload control threads have been joined
[2025-11-24 10:10:44] 2025-11-24 09:09:51,365 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:51,398 | INFO     | all job control threads have been joined
[2025-11-24 10:10:44] 2025-11-24 09:09:51,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:10:44] 2025-11-24 09:09:51,612 | INFO     | [data] control thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:51,665 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,134 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,217 | INFO     | [job] validate thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,228 | INFO     | [payload] control thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,297 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,299 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,404 | INFO     | [job] control thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:52,618 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:09:55,434 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:10:44] 2025-11-24 09:10:19,348 | INFO     | PID=1658129 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 10:10:44] 2025-11-24 09:10:19,348 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:10:44] 2025-11-24 09:10:19,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:10:44] 2025-11-24 09:10:19,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:10:44] 2025-11-24 09:10:38,467 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:10:44] 2025-11-24 09:10:39,473 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140145919113024)>', '<ExcThread(monitor, started 140145042908928)>']
[2025-11-24 10:10:44] 2025-11-24 09:10:40,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:10:44] 2025-11-24 09:10:40,460 | INFO     | [monitor] control thread has ended
[2025-11-24 10:10:44] 2025-11-24 09:10:44,496 | INFO     | all workflow threads have been joined
[2025-11-24 10:10:44] 2025-11-24 09:10:44,496 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:10:44] 2025-11-24 09:10:44,497 | INFO     | traces error code: 0
[2025-11-24 10:10:44] 2025-11-24 09:10:44,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:10:44] 2025-11-24 09:10:44,545 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:10:44] 2025-11-24 09:10:44,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:10:44] 2025-11-24 09:10:44,551 [wrapper] pilotpid: 1658129
[2025-11-24 10:10:44] 2025-11-24 09:10:44,554 [wrapper] Pilot exit status: 0
[2025-11-24 10:10:44] 2025-11-24 09:10:44,561 [wrapper] pandaids: 6895350910
[2025-11-24 10:10:44] 2025-11-24 09:10:44,580 [wrapper] cleanup supervisor_pilot 1658135 1658130
[2025-11-24 10:10:44] 2025-11-24 09:10:44,583 [wrapper] Test setup, not cleaning
[2025-11-24 10:10:44] 2025-11-24 09:10:44,586 [wrapper] apfmon messages muted
[2025-11-24 10:10:44] 2025-11-24 09:10:44,589 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:10:44] 2025-11-24 09:10:44,592 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:10:44]  *** Error codes and diagnostics ***
[2025-11-24 10:10:44]     "exeErrorCode": 65,
[2025-11-24 10:10:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 10:10:44]     "pilotErrorCode": 1305,
[2025-11-24 10:10:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-24 10:10:44]  *** Listing of results directory ***
[2025-11-24 10:10:44] total 404504
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc    576529 Nov 22 23:07 pilot3.tar.gz
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc      5112 Nov 22 23:36 queuedata.json
[2025-11-24 10:10:44] -rwx------ 1 boinc boinc     36292 Nov 22 23:36 runpilot2-wrapper.sh
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc       100 Nov 24 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:10:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 10:06 run_atlas
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc       105 Nov 24 10:06 job.xml
[2025-11-24 10:10:44] -rw-r--r-- 2 boinc boinc 410017317 Nov 24 10:06 EVNT.47483658._000528.pool.root.1
[2025-11-24 10:10:44] -rw-r--r-- 2 boinc boinc    590100 Nov 24 10:06 input.tar.gz
[2025-11-24 10:10:44] -rw-r--r-- 2 boinc boinc     15847 Nov 24 10:06 start_atlas.sh
[2025-11-24 10:10:44] drwxrwx--x 2 boinc boinc      4096 Nov 24 10:06 shared
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:06 boinc_setup_complete
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc      6195 Nov 24 10:06 init_data.xml
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:06 boinc_lockfile
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc      2784 Nov 24 10:06 pandaJob.out
[2025-11-24 10:10:44] -rw------- 1 boinc boinc    989794 Nov 24 10:06 agis_schedconf.cvmfs.json
[2025-11-24 10:10:44] -rw------- 1 boinc boinc   1526164 Nov 24 10:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:10:44] drwx------ 5 boinc boinc      4096 Nov 24 10:06 pilot3
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc       523 Nov 24 10:07 boinc_task_state.xml
[2025-11-24 10:10:44] -rw------- 1 boinc boinc       957 Nov 24 10:07 memory_monitor_summary.json
[2025-11-24 10:10:44] -rw------- 1 boinc boinc     55705 Nov 24 10:07 log.47556137._005237.job.log.tgz.1
[2025-11-24 10:10:44] -rw------- 1 boinc boinc        95 Nov 24 10:09 pilot_heartbeat.json
[2025-11-24 10:10:44] -rw------- 1 boinc boinc      8388 Nov 24 10:09 heartbeat.json
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc      8192 Nov 24 10:10 boinc_mmap_file
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc        23 Nov 24 10:10 wrapper_checkpoint.txt
[2025-11-24 10:10:44] -rw------- 1 boinc boinc      4752 Nov 24 10:10 pilotlog.txt
[2025-11-24 10:10:44] -rw------- 1 boinc boinc     91580 Nov 24 10:10 log.47556137._005237.job.log.1
[2025-11-24 10:10:44] -rw------- 1 boinc boinc       186 Nov 24 10:10 output.list
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc       620 Nov 24 10:10 runtime_log
[2025-11-24 10:10:44] -rw------- 1 boinc boinc    163840 Nov 24 10:10 result.tar.gz
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc      8744 Nov 24 10:10 runtime_log.err
[2025-11-24 10:10:44] -rw------- 1 boinc boinc       649 Nov 24 10:10 EEZNDmkOBh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpKIKDmukvwPm.diag
[2025-11-24 10:10:44] -rw-r--r-- 1 boinc boinc      9403 Nov 24 10:10 stderr.txt
[2025-11-24 10:10:44] No HITS result produced
[2025-11-24 10:10:44]  *** Contents of shared directory: ***
[2025-11-24 10:10:44] total 401168
[2025-11-24 10:10:44] -rw-r--r-- 2 boinc boinc 410017317 Nov 24 10:06 ATLAS.root_0
[2025-11-24 10:10:44] -rw-r--r-- 2 boinc boinc    590100 Nov 24 10:06 input.tar.gz
[2025-11-24 10:10:44] -rw-r--r-- 2 boinc boinc     15847 Nov 24 10:06 start_atlas.sh
[2025-11-24 10:10:44] -rw------- 1 boinc boinc    163840 Nov 24 10:10 result.tar.gz
10:10:45 (1654405): run_atlas exited; CPU time 30.008550
10:10:45 (1654405): called boinc_finish(0)

</stderr_txt>
]]>

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