Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:50:18 (20996): wrapper (7.7.26015): starting
03:50:18 (20996): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:50:18] Arguments: --nthreads 8
[2025-11-24 03:50:18] Threads: 8
[2025-11-24 03:50:18] Checking for CVMFS
[2025-11-24 03:50:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:50:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:50:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:50:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:50:19] 2.11.2.0 28705 114745 142476 153239 2 90 9990013 18432001 1725 130560 0 83611920 99.974 4902501 32008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 03:50:19] CVMFS is ok
[2025-11-24 03:50:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:50:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:50:19] Further information can be found at the LHC@home message board.
[2025-11-24 03:50:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:50:19] Checking for apptainer binary...
[2025-11-24 03:50:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:50:19] Running /usr/bin/apptainer --version
[2025-11-24 03:50:19] apptainer version 1.3.2-1.el7
[2025-11-24 03:50:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:50:19] c-206-27.aglt2.org
[2025-11-24 03:50:19] apptainer works
[2025-11-24 03:50:19] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:50:19] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:50:19] Starting ATLAS job with PandaID=6895351915
[2025-11-24 03:50:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:47:43 (14754): wrapper (7.7.26015): starting
08:47:43 (14754): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:47:43] Arguments: --nthreads 8
[2025-11-24 08:47:43] Threads: 8
[2025-11-24 08:47:43] This job has been restarted, cleaning up previous attempt
[2025-11-24 08:47:43] Checking for CVMFS
[2025-11-24 08:47:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:47:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:47:43] 2.11.2.0 28705 115042 141860 153247 1 57 10033703 18432001 1 130560 0 83873337 99.974 4914352 32012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 08:47:43] CVMFS is ok
[2025-11-24 08:47:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:47:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:47:43] Further information can be found at the LHC@home message board.
[2025-11-24 08:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:47:43] Checking for apptainer binary...
[2025-11-24 08:47:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:47:43] Running /usr/bin/apptainer --version
[2025-11-24 08:47:43] apptainer version 1.3.2-1.el7
[2025-11-24 08:47:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:47:44] c-206-27.aglt2.org
[2025-11-24 08:47:44] apptainer works
[2025-11-24 08:47:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:47:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:47:44] Starting ATLAS job with PandaID=6895351915
[2025-11-24 08:47:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:36:01]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:36:01] 2025-11-25 09:35:00,806 | INFO     | time since job start (71222s) is within the limit (172800.0s)
[2025-11-25 04:36:01] 2025-11-25 09:35:01,973 | INFO     | monitor loop #5087: job 0:6895351915 is in state 'finished'
[2025-11-25 04:36:01] 2025-11-25 09:35:01,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,248 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 04:36:01] 2025-11-25 09:35:02,349 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2256.0416666666665
[2025-11-25 04:36:01] 2025-11-25 09:35:02,352 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895351915/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,353 | INFO     | extracted standard info from prmon json
[2025-11-25 04:36:01] 2025-11-25 09:35:02,353 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:36:01] 2025-11-25 09:35:02,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:36:01] 2025-11-25 09:35:02,368 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:36:01] 2025-11-25 09:35:02,369 | INFO     | sum of square deviations: 492820620095.27496
[2025-11-25 04:36:01] 2025-11-25 09:35:02,394 | INFO     | sum of deviations: 2496262440003.1494
[2025-11-25 04:36:01] 2025-11-25 09:35:02,394 | INFO     | mean x: 1764027668.8020566
[2025-11-25 04:36:01] 2025-11-25 09:35:02,394 | INFO     | mean y: 2871936.4378748927
[2025-11-25 04:36:01] 2025-11-25 09:35:02,394 | INFO     | intersect: -8932379214.184807
[2025-11-25 04:36:01] 2025-11-25 09:35:02,395 | INFO     | chi2: 4.793169866926246
[2025-11-25 04:36:01] 2025-11-25 09:35:02,397 | INFO     | sum of square deviations: 486513522194.54346
[2025-11-25 04:36:01] 2025-11-25 09:35:02,435 | INFO     | sum of deviations: 2798179046342.653
[2025-11-25 04:36:01] 2025-11-25 09:35:02,435 | INFO     | mean x: 1764027516.3055077
[2025-11-25 04:36:01] 2025-11-25 09:35:02,435 | INFO     | mean y: 2879231.7418244407
[2025-11-25 04:36:01] 2025-11-25 09:35:02,435 | INFO     | intersect: -10142912422.789305
[2025-11-25 04:36:01] 2025-11-25 09:35:02,437 | INFO     | chi2: 2.709709919568814
[2025-11-25 04:36:01] 2025-11-25 09:35:02,437 | INFO     | current chi2=2.709709919568814 (change=43.46726707379367 %)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,439 | INFO     | sum of square deviations: 480260471818.78674
[2025-11-25 04:36:01] 2025-11-25 09:35:02,481 | INFO     | sum of deviations: 2902617053716.12
[2025-11-25 04:36:01] 2025-11-25 09:35:02,482 | INFO     | mean x: 1764027363.8089888
[2025-11-25 04:36:01] 2025-11-25 09:35:02,482 | INFO     | mean y: 2881776.0458081244
[2025-11-25 04:36:01] 2025-11-25 09:35:02,482 | INFO     | intersect: -10658615910.871607
[2025-11-25 04:36:01] 2025-11-25 09:35:02,484 | INFO     | chi2: 2.342361595144544
[2025-11-25 04:36:01] 2025-11-25 09:35:02,484 | INFO     | current chi2=2.342361595144544 (change=13.5567398477371 %)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,484 | INFO     | right removable region: 1156
[2025-11-25 04:36:01] 2025-11-25 09:35:02,486 | INFO     | sum of square deviations: 486513022178.1551
[2025-11-25 04:36:01] 2025-11-25 09:35:02,519 | INFO     | sum of deviations: 2210909145774.808
[2025-11-25 04:36:01] 2025-11-25 09:35:02,519 | INFO     | mean x: 1764027821.3046472
[2025-11-25 04:36:01] 2025-11-25 09:35:02,519 | INFO     | mean y: 2878826.4242685027
[2025-11-25 04:36:01] 2025-11-25 09:35:02,519 | INFO     | intersect: -8013566912.402189
[2025-11-25 04:36:01] 2025-11-25 09:35:02,520 | INFO     | chi2: 2.8421252425167034
[2025-11-25 04:36:01] 2025-11-25 09:35:02,520 | INFO     | current chi2=2.8421252425167034 (change=40.704683509593714 %)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,521 | INFO     | sum of square deviations: 480259755560.4637
[2025-11-25 04:36:01] 2025-11-25 09:35:02,546 | INFO     | sum of deviations: 2117194202647.6519
[2025-11-25 04:36:01] 2025-11-25 09:35:02,547 | INFO     | mean x: 1764027973.803803
[2025-11-25 04:36:01] 2025-11-25 09:35:02,547 | INFO     | mean y: 2881111.4874675884
[2025-11-25 04:36:01] 2025-11-25 09:35:02,547 | INFO     | intersect: -7773722603.906489
[2025-11-25 04:36:01] 2025-11-25 09:35:02,548 | INFO     | chi2: 2.7545506779617273
[2025-11-25 04:36:01] 2025-11-25 09:35:02,549 | INFO     | current chi2=2.7545506779617273 (change=3.0813056104955043 %)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,549 | INFO     | left removable region: 20
[2025-11-25 04:36:01] 2025-11-25 09:35:02,550 | INFO     | sum of square deviations: 454581242827.3096
[2025-11-25 04:36:01] 2025-11-25 09:35:02,576 | INFO     | sum of deviations: 2386191889521.1465
[2025-11-25 04:36:01] 2025-11-25 09:35:02,576 | INFO     | mean x: 1764027943.3107395
[2025-11-25 04:36:01] 2025-11-25 09:35:02,577 | INFO     | mean y: 2894343.6681338027
[2025-11-25 04:36:01] 2025-11-25 09:35:02,577 | INFO     | intersect: -9256856773.726355
[2025-11-25 04:36:01] 2025-11-25 09:35:02,578 | INFO     | chi2: 0.24617408867902688
[2025-11-25 04:36:01] 2025-11-25 09:35:02,578 | INFO     | current memory leak: 5.25 B/s (using 1136 data points, chi2=0.25)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | could have reported an average CPU frequency of 2577 MHz (42 samples)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | ..............................
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | . Timing measurements:
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | . get job = 0 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | . initial setup = 2 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | . payload setup = 6 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | . stage-in = 0 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,579 | INFO     | . payload execution = 71191 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,580 | INFO     | . stage-out = 3 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,580 | INFO     | . log creation = 0 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,580 | INFO     | ..............................
[2025-11-25 04:36:01] 2025-11-25 09:35:02,812 | INFO     | time since job start (71224s) is within the limit (172800.0s)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,920 | INFO     | 
[2025-11-25 04:36:01] 2025-11-25 09:35:02,920 | INFO     | job summary report
[2025-11-25 04:36:01] 2025-11-25 09:35:02,921 | INFO     | --------------------------------------------------
[2025-11-25 04:36:01] 2025-11-25 09:35:02,921 | INFO     | PanDA job id: 6895351915
[2025-11-25 04:36:01] 2025-11-25 09:35:02,921 | INFO     | task id: 47556137
[2025-11-25 04:36:01] 2025-11-25 09:35:02,928 | INFO     | errors: (none)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,929 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:36:01] 2025-11-25 09:35:02,929 | INFO     | pilot state: finished 
[2025-11-25 04:36:01] 2025-11-25 09:35:02,929 | INFO     | transexitcode: 0
[2025-11-25 04:36:01] 2025-11-25 09:35:02,930 | INFO     | exeerrorcode: 0
[2025-11-25 04:36:01] 2025-11-25 09:35:02,930 | INFO     | exeerrordiag: 
[2025-11-25 04:36:01] 2025-11-25 09:35:02,930 | INFO     | exitcode: 0
[2025-11-25 04:36:01] 2025-11-25 09:35:02,930 | INFO     | exitmsg: OK
[2025-11-25 04:36:01] 2025-11-25 09:35:02,930 | INFO     | cpuconsumptiontime: 553012 s
[2025-11-25 04:36:01] 2025-11-25 09:35:02,930 | INFO     | nevents: 1000
[2025-11-25 04:36:01] 2025-11-25 09:35:02,931 | INFO     | neventsw: 0
[2025-11-25 04:36:01] 2025-11-25 09:35:02,931 | INFO     | pid: 12904
[2025-11-25 04:36:01] 2025-11-25 09:35:02,931 | INFO     | pgrp: 12904
[2025-11-25 04:36:01] 2025-11-25 09:35:02,931 | INFO     | corecount: 8
[2025-11-25 04:36:01] 2025-11-25 09:35:02,931 | INFO     | event service: False
[2025-11-25 04:36:01] 2025-11-25 09:35:02,932 | INFO     | sizes: {0: 2283425, 1: 2284281, 5: 2284543, 12: 2284599, 71201: 2341566, 71205: 2350749, 71209: 2350939}
[2025-11-25 04:36:01] 2025-11-25 09:35:02,932 | INFO     | --------------------------------------------------
[2025-11-25 04:36:01] 2025-11-25 09:35:02,932 | INFO     | 
[2025-11-25 04:36:01] 2025-11-25 09:35:02,933 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 04:36:01] 2025-11-25 09:35:02,953 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,953 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,954 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,954 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,954 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,954 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,956 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,956 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,957 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,958 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:36:01] 2025-11-25 09:35:02,958 | INFO     | job 6895351915 has completed (purged errors)
[2025-11-25 04:36:01] 2025-11-25 09:35:02,959 | INFO     | overall cleanup function is called
[2025-11-25 04:36:01] 2025-11-25 09:35:03,979 | INFO     | --- collectZombieJob: --- 10, [12904]
[2025-11-25 04:36:01] 2025-11-25 09:35:03,979 | INFO     | zombie collector waiting for pid 12904
[2025-11-25 04:36:01] 2025-11-25 09:35:03,980 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:36:01] 2025-11-25 09:35:03,980 | INFO     | collected zombie processes
[2025-11-25 04:36:01] 2025-11-25 09:35:03,980 | INFO     | will attempt to kill all subprocesses of pid=12904
[2025-11-25 04:36:01] 2025-11-25 09:35:04,099 | INFO     | process IDs to be killed: [12904] (in reverse order)
[2025-11-25 04:36:01] 2025-11-25 09:35:04,139 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:36:01] 2025-11-25 09:35:04,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:36:01] 2025-11-25 09:35:04,142 | INFO     | did not find any defunct processes belonging to 12904
[2025-11-25 04:36:01] 2025-11-25 09:35:04,144 | INFO     | did not find any defunct processes belonging to 12904
[2025-11-25 04:36:01] 2025-11-25 09:35:04,146 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:36:01] 2025-11-25 09:35:04,146 | INFO     | ready for new job
[2025-11-25 04:36:01] 2025-11-25 09:35:04,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:36:01] 2025-11-25 09:35:04,151 | INFO     | ***************************************
[2025-11-25 04:36:01] 2025-11-25 09:35:04,151 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:36:01] 2025-11-25 09:35:04,151 | INFO     | ***************************************
[2025-11-25 04:36:01] 2025-11-25 09:35:04,151 | INFO     | 
[2025-11-25 04:36:01] 2025-11-25 09:35:04,152 | INFO     | architecture information:
[2025-11-25 04:36:01] 2025-11-25 09:35:04,153 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:36:01] 2025-11-25 09:35:04,163 | INFO     | cat /etc/os-release:
[2025-11-25 04:36:01] NAME="CentOS Linux"
[2025-11-25 04:36:01] VERSION="7 (Core)"
[2025-11-25 04:36:01] ID="centos"
[2025-11-25 04:36:01] ID_LIKE="rhel fedora"
[2025-11-25 04:36:01] VERSION_ID="7"
[2025-11-25 04:36:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:36:01] ANSI_COLOR="0;31"
[2025-11-25 04:36:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:36:01] HOME_URL="https://www.centos.org/"
[2025-11-25 04:36:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:36:01] 
[2025-11-25 04:36:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:36:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:36:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:36:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:36:01] 
[2025-11-25 04:36:01] 2025-11-25 09:35:04,164 | INFO     | ***************************************
[2025-11-25 04:36:01] 2025-11-25 09:35:04,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 04:36:01] 2025-11-25 09:35:04,677 | INFO     | sufficient remaining disk space (25199378432 B)
[2025-11-25 04:36:01] 2025-11-25 09:35:04,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:36:01] 2025-11-25 09:35:04,678 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:36:01] 2025-11-25 09:35:04,678 | INFO     | update_server=False
[2025-11-25 04:36:01] 2025-11-25 09:35:04,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:36:01] 2025-11-25 09:35:04,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:36:01] 2025-11-25 09:35:04,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:36:01] 2025-11-25 09:35:04,679 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 04:36:01] 2025-11-25 09:35:04,679 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:36:01] 2025-11-25 09:35:04,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:36:01] 2025-11-25 09:35:04,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:36:01] 2025-11-25 09:35:04,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:36:01] 2025-11-25 09:35:04,894 | INFO     | all data control threads have been joined
[2025-11-25 04:36:01] 2025-11-25 09:35:05,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:36:01] 2025-11-25 09:35:05,481 | INFO     | aborting loop
[2025-11-25 04:36:01] 2025-11-25 09:35:05,495 | INFO     | all job control threads have been joined
[2025-11-25 04:36:01] 2025-11-25 09:35:05,683 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,684 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,691 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,888 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,888 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,898 | INFO     | [data] control thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,904 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:05,940 | INFO     | all payload control threads have been joined
[2025-11-25 04:36:01] 2025-11-25 09:35:06,232 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,487 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,500 | INFO     | [job] control thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,666 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,685 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,694 | INFO     | [job] validate thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,889 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:06,945 | INFO     | [payload] control thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:08,730 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:36:01] 2025-11-25 09:35:55,823 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:36:01] 2025-11-25 09:35:55,826 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140645764740928)>', '<ExcThread(monitor, started 140645314311936)>']
[2025-11-25 04:36:01] 2025-11-25 09:35:55,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:36:01] 2025-11-25 09:35:55,928 | INFO     | [monitor] control thread has ended
[2025-11-25 04:36:01] 2025-11-25 09:36:00,851 | INFO     | all workflow threads have been joined
[2025-11-25 04:36:01] 2025-11-25 09:36:00,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:36:01] 2025-11-25 09:36:00,862 | INFO     | traces error code: 0
[2025-11-25 04:36:01] 2025-11-25 09:36:00,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:36:01] 2025-11-25 09:36:00,950 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:36:01] 2025-11-25 09:36:00,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:36:01] 2025-11-25 09:36:00,956 [wrapper] pilotpid: 25833
[2025-11-25 04:36:01] 2025-11-25 09:36:00,958 [wrapper] Pilot exit status: 0
[2025-11-25 04:36:01] 2025-11-25 09:36:00,966 [wrapper] pandaids: 6895351915 6895351915
[2025-11-25 04:36:01] 2025-11-25 09:36:00,998 [wrapper] cleanup supervisor_pilot 10275 25834
[2025-11-25 04:36:01] 2025-11-25 09:36:01,001 [wrapper] Test setup, not cleaning
[2025-11-25 04:36:01] 2025-11-25 09:36:01,003 [wrapper] apfmon messages muted
[2025-11-25 04:36:01] 2025-11-25 09:36:01,006 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:36:01] 2025-11-25 09:36:01,008 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:36:01]  *** Error codes and diagnostics ***
[2025-11-25 04:36:01]     "exeErrorCode": 0,
[2025-11-25 04:36:01]     "exeErrorDiag": "",
[2025-11-25 04:36:01]     "pilotErrorCode": 0,
[2025-11-25 04:36:01]     "pilotErrorDiag": "",
[2025-11-25 04:36:01]  *** Listing of results directory ***
[2025-11-25 04:36:01] total 1739716
[2025-11-25 04:36:01] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 20:50 pilot3.tar.gz
[2025-11-25 04:36:01] -rwx------ 1 boincer umatlas     36292 Nov 22 20:57 runpilot2-wrapper.sh
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 20:57 queuedata.json
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas       100 Nov 24 03:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:36:01] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 03:50 run_atlas
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas       105 Nov 24 03:50 job.xml
[2025-11-25 04:36:01] -rw-r--r-- 3 boincer umatlas 410484326 Nov 24 03:50 EVNT.47483658._000573.pool.root.1
[2025-11-25 04:36:01] -rw-r--r-- 3 boincer umatlas 410484326 Nov 24 03:50 ATLAS.root_0
[2025-11-25 04:36:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:50 start_atlas.sh
[2025-11-25 04:36:01] drwxrwx--x 2 boincer umatlas      4096 Nov 24 03:50 shared
[2025-11-25 04:36:01] -rw-r--r-- 2 boincer umatlas    590097 Nov 24 03:50 input.tar.gz
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas         0 Nov 24 03:50 boinc_lockfile
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas      2782 Nov 24 08:47 pandaJob.out
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas        57 Nov 24 08:47 setup.sh.local
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas    988280 Nov 24 08:47 agis_schedconf.cvmfs.json
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas       533 Nov 25 04:23 boinc_task_state.xml
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 04:27 init_data.xml
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas 932250746 Nov 25 04:34 HITS.47556137._005681.pool.root.1
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas      1064 Nov 25 04:34 memory_monitor_summary.json
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas   1516240 Nov 25 04:34 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas   2314940 Nov 25 04:34 log.47556137._005681.job.log.tgz.1
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas        96 Nov 25 04:35 pilot_heartbeat.json
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas      8655 Nov 25 04:35 heartbeat.json
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 04:35 boinc_mmap_file
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas        29 Nov 25 04:35 wrapper_checkpoint.txt
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas      4552 Nov 25 04:36 pilotlog.txt
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas   9851463 Nov 25 04:36 log.47556137._005681.job.log.1
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas       353 Nov 25 04:36 output.list
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas       620 Nov 25 04:36 runtime_log
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas  12185600 Nov 25 04:36 result.tar.gz
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas       793 Nov 25 04:36 Y9jNDmbXEh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGXKKDmu63Ufn.diag
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 04:36 runtime_log.err
[2025-11-25 04:36:01] -rw-r--r-- 1 boincer umatlas     23397 Nov 25 04:36 stderr.txt
[2025-11-25 04:36:01] HITS file was successfully produced:
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas 932250746 Nov 25 04:34 shared/HITS.pool.root.1
[2025-11-25 04:36:01]  *** Contents of shared directory: ***
[2025-11-25 04:36:01] total 1323768
[2025-11-25 04:36:01] -rw-r--r-- 3 boincer umatlas 410484326 Nov 24 03:50 ATLAS.root_0
[2025-11-25 04:36:01] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:50 start_atlas.sh
[2025-11-25 04:36:01] -rw-r--r-- 2 boincer umatlas    590097 Nov 24 03:50 input.tar.gz
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas 932250746 Nov 25 04:34 HITS.pool.root.1
[2025-11-25 04:36:01] -rw------- 1 boincer umatlas  12185600 Nov 25 04:36 result.tar.gz
04:36:02 (14754): run_atlas exited; CPU time 552092.163413
04:36:02 (14754): called boinc_finish(0)

</stderr_txt>
]]>

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