Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:23 (24285): wrapper (7.7.26015): starting
21:50:23 (24285): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 21:50:23] Arguments: --nthreads 8
[2025-11-26 21:50:23] Threads: 8
[2025-11-26 21:50:23] Checking for CVMFS
[2025-11-26 21:50:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 21:50:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 21:50:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 21:50:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 21:50:26] 2.11.2.0 29208 222852 133992 153334 2 85 18192466 25165824 1288 130560 8 96548640 99.901 38849417 2343 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 21:50:26] CVMFS is ok
[2025-11-26 21:50:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 21:50:26] Checking for apptainer binary...
[2025-11-26 21:50:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 21:50:26] Running /usr/bin/apptainer --version
[2025-11-26 21:50:26] apptainer version 1.3.2-1.el7
[2025-11-26 21:50:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 21:50:47] cg-vwn345.simple-grid.lan
[2025-11-26 21:50:47] apptainer works
[2025-11-26 21:50:47] Set ATHENA_PROC_NUMBER=8
[2025-11-26 21:50:47] Set ATHENA_CORE_NUMBER=8
[2025-11-26 21:50:47] Starting ATLAS job with PandaID=6893847135
[2025-11-26 21:50:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:23:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:23:28] 2025-11-27 20:22:44,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:28] 2025-11-27 20:22:46,529 | INFO     | time since job start (84493s) is within the limit (172800.0s)
[2025-11-27 21:23:28] 2025-11-27 20:22:47,164 | INFO     | monitor loop #5681: job 0:6893847135 is in state 'finished'
[2025-11-27 21:23:28] 2025-11-27 20:22:47,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:28] 2025-11-27 20:22:47,682 | INFO     | PID=28071 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:23:28] 2025-11-27 20:22:47,683 | INFO     | .. there are 9 such processes running
[2025-11-27 21:23:28] 2025-11-27 20:22:48,684 | INFO     | time since job start (84495s) is within the limit (172800.0s)
[2025-11-27 21:23:28] 2025-11-27 20:22:49,669 | INFO     | monitor loop #5682: job 0:6893847135 is in state 'finished'
[2025-11-27 21:23:28] 2025-11-27 20:22:49,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:28] 2025-11-27 20:22:50,698 | INFO     | time since job start (84497s) is within the limit (172800.0s)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,177 | INFO     | monitor loop #5683: job 0:6893847135 is in state 'finished'
[2025-11-27 21:23:28] 2025-11-27 20:22:52,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,365 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 21:23:28] 2025-11-27 20:22:52,367 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 21:23:28] 2025-11-27 20:22:52,368 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6893847135/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,369 | INFO     | extracted standard info from prmon json
[2025-11-27 21:23:28] 2025-11-27 20:22:52,369 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:23:28] 2025-11-27 20:22:52,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:23:28] 2025-11-27 20:22:52,411 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:23:28] 2025-11-27 20:22:52,413 | INFO     | sum of square deviations: 807855104720.877
[2025-11-27 21:23:28] 2025-11-27 20:22:52,493 | INFO     | sum of deviations: 3815238754654.757
[2025-11-27 21:23:28] 2025-11-27 20:22:52,494 | INFO     | mean x: 1764232909.5719476
[2025-11-27 21:23:28] 2025-11-27 20:22:52,494 | INFO     | mean y: 2844601.739825581
[2025-11-27 21:23:28] 2025-11-27 20:22:52,494 | INFO     | intersect: -8329057653.38282
[2025-11-27 21:23:28] 2025-11-27 20:22:52,496 | INFO     | chi2: 21.559336555148604
[2025-11-27 21:23:28] 2025-11-27 20:22:52,498 | INFO     | sum of square deviations: 799080952860.1112
[2025-11-27 21:23:28] 2025-11-27 20:22:52,554 | INFO     | sum of deviations: 4289211999664.1553
[2025-11-27 21:23:28] 2025-11-27 20:22:52,554 | INFO     | mean x: 1764232757.075857
[2025-11-27 21:23:28] 2025-11-27 20:22:52,554 | INFO     | mean y: 2852839.267687819
[2025-11-27 21:23:28] 2025-11-27 20:22:52,554 | INFO     | intersect: -9466986586.59467
[2025-11-27 21:23:28] 2025-11-27 20:22:52,556 | INFO     | chi2: 18.168707755537813
[2025-11-27 21:23:28] 2025-11-27 20:22:52,556 | INFO     | current chi2=18.168707755537813 (change=15.726962612868864 %)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,556 | INFO     | right removable region: 1370
[2025-11-27 21:23:28] 2025-11-27 20:22:52,558 | INFO     | sum of square deviations: 799080053110.1106
[2025-11-27 21:23:28] 2025-11-27 20:22:52,636 | INFO     | sum of deviations: 3240475034591.735
[2025-11-27 21:23:28] 2025-11-27 20:22:52,636 | INFO     | mean x: 1764233062.075857
[2025-11-27 21:23:28] 2025-11-27 20:22:52,636 | INFO     | mean y: 2854589.9256017506
[2025-11-27 21:23:28] 2025-11-27 20:22:52,636 | INFO     | intersect: -7151564007.569244
[2025-11-27 21:23:28] 2025-11-27 20:22:52,646 | INFO     | chi2: 16.839662883841132
[2025-11-27 21:23:28] 2025-11-27 20:22:52,646 | INFO     | current chi2=16.839662883841132 (change=21.891553384467958 %)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,646 | INFO     | left removable region: 10
[2025-11-27 21:23:28] 2025-11-27 20:22:52,648 | INFO     | sum of square deviations: 780000157422.2762
[2025-11-27 21:23:28] 2025-11-27 20:22:52,708 | INFO     | time since job start (84499s) is within the limit (172800.0s)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,753 | INFO     | sum of deviations: 3313934517478.958
[2025-11-27 21:23:28] 2025-11-27 20:22:52,758 | INFO     | mean x: 1764233031.5845587
[2025-11-27 21:23:28] 2025-11-27 20:22:52,758 | INFO     | mean y: 2873384.9220588235
[2025-11-27 21:23:28] 2025-11-27 20:22:52,758 | INFO     | intersect: -7492705538.5055275
[2025-11-27 21:23:28] 2025-11-27 20:22:52,759 | INFO     | chi2: 9.271483978386478
[2025-11-27 21:23:28] 2025-11-27 20:22:52,760 | INFO     | current memory leak: 4.25 B/s (using 1360 data points, chi2=9.27)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,761 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 21:23:28] 2025-11-27 20:22:52,761 | INFO     | ..............................
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . Timing measurements:
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . get job = 0 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . initial setup = 7 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . payload setup = 144 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . stage-in = 0 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . payload execution = 84071 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . stage-out = 4 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | . log creation = 1 s
[2025-11-27 21:23:28] 2025-11-27 20:22:52,762 | INFO     | ..............................
[2025-11-27 21:23:28] 2025-11-27 20:22:53,107 | INFO     | 
[2025-11-27 21:23:28] 2025-11-27 20:22:53,107 | INFO     | job summary report
[2025-11-27 21:23:28] 2025-11-27 20:22:53,107 | INFO     | --------------------------------------------------
[2025-11-27 21:23:28] 2025-11-27 20:22:53,107 | INFO     | PanDA job id: 6893847135
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | task id: 47523449
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | errors: (none)
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | pilot state: finished 
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | transexitcode: 0
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | exeerrorcode: 0
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | exeerrordiag: 
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | exitcode: 0
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | exitmsg: OK
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | cpuconsumptiontime: 317495 s
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | nevents: 1000
[2025-11-27 21:23:28] 2025-11-27 20:22:53,108 | INFO     | neventsw: 0
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | pid: 2248
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | pgrp: 2248
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | corecount: 8
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | event service: False
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | sizes: {0: 2284145, 1: 2284344, 12: 2284344, 23: 2284372, 33: 2284400, 44: 2284456, 55: 2284612, 65: 2284640, 76: 2284668, 87: 2284724, 92: 2285014, 98: 2285322, 8
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | --------------------------------------------------
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | 
[2025-11-27 21:23:28] 2025-11-27 20:22:53,109 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | job 6893847135 has completed (purged errors)
[2025-11-27 21:23:28] 2025-11-27 20:22:53,612 | INFO     | overall cleanup function is called
[2025-11-27 21:23:28] 2025-11-27 20:22:54,629 | INFO     | --- collectZombieJob: --- 10, [2248]
[2025-11-27 21:23:28] 2025-11-27 20:22:54,629 | INFO     | zombie collector waiting for pid 2248
[2025-11-27 21:23:28] 2025-11-27 20:22:54,629 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:23:28] 2025-11-27 20:22:54,629 | INFO     | collected zombie processes
[2025-11-27 21:23:28] 2025-11-27 20:22:54,630 | INFO     | will attempt to kill all subprocesses of pid=2248
[2025-11-27 21:23:28] 2025-11-27 20:22:54,757 | INFO     | process IDs to be killed: [2248] (in reverse order)
[2025-11-27 21:23:28] 2025-11-27 20:22:55,630 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:23:28] 2025-11-27 20:22:55,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:23:28] 2025-11-27 20:22:55,633 | INFO     | did not find any defunct processes belonging to 2248
[2025-11-27 21:23:28] 2025-11-27 20:22:55,635 | INFO     | did not find any defunct processes belonging to 2248
[2025-11-27 21:23:28] 2025-11-27 20:22:55,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:23:28] 2025-11-27 20:22:55,676 | INFO     | ready for new job
[2025-11-27 21:23:28] 2025-11-27 20:22:55,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:23:28] 2025-11-27 20:22:55,682 | INFO     | ***************************************
[2025-11-27 21:23:28] 2025-11-27 20:22:55,682 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:23:28] 2025-11-27 20:22:55,682 | INFO     | ***************************************
[2025-11-27 21:23:28] 2025-11-27 20:22:55,682 | INFO     | 
[2025-11-27 21:23:28] 2025-11-27 20:22:55,683 | INFO     | pilot is running in a VM
[2025-11-27 21:23:28] 2025-11-27 20:22:55,683 | INFO     | architecture information:
[2025-11-27 21:23:28] 2025-11-27 20:22:55,688 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:23:28] 2025-11-27 20:22:55,973 | INFO     | cat /etc/os-release:
[2025-11-27 21:23:28] NAME="CentOS Linux"
[2025-11-27 21:23:28] VERSION="7 (Core)"
[2025-11-27 21:23:28] ID="centos"
[2025-11-27 21:23:28] ID_LIKE="rhel fedora"
[2025-11-27 21:23:28] VERSION_ID="7"
[2025-11-27 21:23:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:23:28] ANSI_COLOR="0;31"
[2025-11-27 21:23:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:23:28] HOME_URL="https://www.centos.org/"
[2025-11-27 21:23:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:23:28] 
[2025-11-27 21:23:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:23:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:23:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:23:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:23:28] 
[2025-11-27 21:23:28] 2025-11-27 20:22:55,974 | INFO     | ***************************************
[2025-11-27 21:23:28] 2025-11-27 20:22:56,477 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-27 21:23:28] 2025-11-27 20:22:56,746 | INFO     | sufficient remaining disk space (494922629120 B)
[2025-11-27 21:23:28] 2025-11-27 20:22:56,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:23:28] 2025-11-27 20:22:56,746 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:23:28] 2025-11-27 20:22:56,746 | INFO     | update_server=False
[2025-11-27 21:23:28] 2025-11-27 20:22:56,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:23:28] 2025-11-27 20:22:56,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:23:28] 2025-11-27 20:22:57,118 | INFO     | all data control threads have been joined
[2025-11-27 21:23:28] 2025-11-27 20:22:57,204 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 21:23:28] 2025-11-27 20:22:57,204 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 21:23:28] 2025-11-27 20:22:57,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:23:28] 2025-11-27 20:22:57,205 | INFO     | will abort loop
[2025-11-27 21:23:28] 2025-11-27 20:22:57,752 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:57,756 | INFO     | all payload control threads have been joined
[2025-11-27 21:23:28] 2025-11-27 20:22:57,770 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:57,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:23:28] 2025-11-27 20:22:57,972 | INFO     | all job control threads have been joined
[2025-11-27 21:23:28] 2025-11-27 20:22:57,996 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,124 | INFO     | [data] control thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:23:28] 2025-11-27 20:22:58,210 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,737 | INFO     | [job] validate thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,762 | INFO     | [payload] control thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,779 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,891 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:58,978 | INFO     | [job] control thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:59,111 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:59,136 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:22:59,955 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:23:28] 2025-11-27 20:23:00,136 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:23:00,757 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:23:06,801 | INFO     | job.realtimelogging is not enabled
[2025-11-27 21:23:28] 2025-11-27 20:23:07,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:23:28] 2025-11-27 20:23:08,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140593328318272)>', '<ExcThread(monitor, started 140592600315648)>']
[2025-11-27 21:23:28] 2025-11-27 20:23:13,609 | INFO     | all workflow threads have been joined
[2025-11-27 21:23:28] 2025-11-27 20:23:13,609 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:23:28] 2025-11-27 20:23:13,610 | INFO     | traces error code: 0
[2025-11-27 21:23:28] 2025-11-27 20:23:13,610 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:23:28] 2025-11-27 20:23:25,849 | INFO     | PID=28071 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 21:23:28] 2025-11-27 20:23:25,850 | INFO     | .. there are 9 such processes running
[2025-11-27 21:23:28] 2025-11-27 20:23:25,851 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:23:28] 2025-11-27 20:23:25,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:23:28] 2025-11-27 20:23:25,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:23:28] 2025-11-27 20:23:25,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:23:28] 2025-11-27 20:23:25,852 | INFO     | [monitor] control thread has ended
[2025-11-27 21:23:28] 2025-11-27 20:23:26,121 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:23:28] 2025-11-27 20:23:26,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:23:28] 2025-11-27 20:23:26,250 [wrapper] pilotpid: 28071
[2025-11-27 21:23:28] 2025-11-27 20:23:26,357 [wrapper] Pilot exit status: 0
[2025-11-27 21:23:28] 2025-11-27 20:23:26,715 [wrapper] pandaids: 6893847135
[2025-11-27 21:23:28] 2025-11-27 20:23:27,545 [wrapper] cleanup supervisor_pilot  5228 28072
[2025-11-27 21:23:28] 2025-11-27 20:23:27,614 [wrapper] Test setup, not cleaning
[2025-11-27 21:23:28] 2025-11-27 20:23:27,672 [wrapper] apfmon messages muted
[2025-11-27 21:23:28] 2025-11-27 20:23:27,722 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:23:28] 2025-11-27 20:23:27,786 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:23:28]  *** Error codes and diagnostics ***
[2025-11-27 21:23:28]     "exeErrorCode": 0,
[2025-11-27 21:23:28]     "exeErrorDiag": "",
[2025-11-27 21:23:28]     "pilotErrorCode": 0,
[2025-11-27 21:23:28]     "pilotErrorDiag": "",
[2025-11-27 21:23:28]  *** Listing of results directory ***
[2025-11-27 21:23:28] total 1346376
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 21:23:28] -rwx------. 1 boinc boinc     36292 Nov 20 11:20 runpilot2-wrapper.sh
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc       100 Nov 26 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:23:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 21:50 run_atlas
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc       105 Nov 26 21:50 job.xml
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc      6392 Nov 26 21:50 init_data.xml
[2025-11-27 21:23:28] -rw-r--r--. 2 boinc boinc 412891510 Nov 26 21:50 EVNT.47493127._000231.pool.root.1
[2025-11-27 21:23:28] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:50 start_atlas.sh
[2025-11-27 21:23:28] drwxrwx--x. 2 boinc boinc        68 Nov 26 21:50 shared
[2025-11-27 21:23:28] -rw-r--r--. 2 boinc boinc    590099 Nov 26 21:50 input.tar.gz
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc         0 Nov 26 21:50 boinc_lockfile
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc      2786 Nov 26 21:50 pandaJob.out
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc    991538 Nov 26 21:54 agis_schedconf.cvmfs.json
[2025-11-27 21:23:28] drwx------. 5 boinc boinc      4096 Nov 26 21:54 pilot3
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc       533 Nov 27 21:02 boinc_task_state.xml
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc 934379277 Nov 27 21:20 HITS.47523449._002306.pool.root.1
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc      1028 Nov 27 21:21 memory_monitor_summary.json
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc   1516240 Nov 27 21:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc   2478044 Nov 27 21:21 log.47523449._002306.job.log.tgz.1
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc      7941 Nov 27 21:22 heartbeat.json
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc      8192 Nov 27 21:23 boinc_mmap_file
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc        29 Nov 27 21:23 wrapper_checkpoint.txt
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc        95 Nov 27 21:23 pilot_heartbeat.json
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc       820 Nov 27 21:23 pilotlog.txt
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc  11288557 Nov 27 21:23 log.47523449._002306.job.log.1
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc       353 Nov 27 21:23 output.list
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc       620 Nov 27 21:23 runtime_log
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc  13783040 Nov 27 21:23 result.tar.gz
[2025-11-27 21:23:28] -rw-------. 1 boinc boinc       662 Nov 27 21:23 UhYMDmswGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtNHKDmxFDwzm.diag
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc      8833 Nov 27 21:23 runtime_log.err
[2025-11-27 21:23:28] -rw-r--r--. 1 boinc boinc     21458 Nov 27 21:23 stderr.txt
[2025-11-27 21:23:29] HITS file was successfully produced:
[2025-11-27 21:23:29] -rw-------. 1 boinc boinc 934379277 Nov 27 21:20 shared/HITS.pool.root.1
[2025-11-27 21:23:29]  *** Contents of shared directory: ***
[2025-11-27 21:23:29] total 1329752
[2025-11-27 21:23:29] -rw-r--r--. 2 boinc boinc 412891510 Nov 26 21:50 ATLAS.root_0
[2025-11-27 21:23:29] -rw-r--r--. 2 boinc boinc     15847 Nov 26 21:50 start_atlas.sh
[2025-11-27 21:23:29] -rw-r--r--. 2 boinc boinc    590099 Nov 26 21:50 input.tar.gz
[2025-11-27 21:23:29] -rw-------. 1 boinc boinc 934379277 Nov 27 21:20 HITS.pool.root.1
[2025-11-27 21:23:29] -rw-------. 1 boinc boinc  13783040 Nov 27 21:23 result.tar.gz
21:23:30 (24285): run_atlas exited; CPU time 318063.175589
21:23:30 (24285): called boinc_finish(0)

</stderr_txt>
]]>

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