Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:14:39 (22260): wrapper (7.7.26015): starting
03:14:39 (22260): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:14:39] Arguments: --nthreads 8
[2025-11-24 03:14:39] Threads: 8
[2025-11-24 03:14:39] Checking for CVMFS
[2025-11-24 03:14:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:14:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:14:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:14:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:14:39] 2.11.2.0 28705 114709 142480 153238 2 81 9985085 18432001 1885 130560 0 83424624 99.974 4901055 32005 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 03:14:39] CVMFS is ok
[2025-11-24 03:14:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:14:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:14:39] Further information can be found at the LHC@home message board.
[2025-11-24 03:14:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:14:39] Checking for apptainer binary...
[2025-11-24 03:14:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:14:39] Running /usr/bin/apptainer --version
[2025-11-24 03:14:39] apptainer version 1.3.2-1.el7
[2025-11-24 03:14:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:14:40] c-206-27.aglt2.org
[2025-11-24 03:14:40] apptainer works
[2025-11-24 03:14:40] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:14:40] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:14:40] Starting ATLAS job with PandaID=6895358607
[2025-11-24 03:14:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:47:43 (14752): wrapper (7.7.26015): starting
08:47:43 (14752): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:47:43] Arguments: --nthreads 8
[2025-11-24 08:47:43] Threads: 8
[2025-11-24 08:47:43] This job has been restarted, cleaning up previous attempt
[2025-11-24 08:47:43] Checking for CVMFS
[2025-11-24 08:47:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:47:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:47:43] 2.11.2.0 28705 115042 141860 153247 1 57 10033703 18432001 1 130560 0 83873337 99.974 4914352 32012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 08:47:43] CVMFS is ok
[2025-11-24 08:47:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:47:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:47:43] Further information can be found at the LHC@home message board.
[2025-11-24 08:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:47:43] Checking for apptainer binary...
[2025-11-24 08:47:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:47:43] Running /usr/bin/apptainer --version
[2025-11-24 08:47:43] apptainer version 1.3.2-1.el7
[2025-11-24 08:47:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:47:44] c-206-27.aglt2.org
[2025-11-24 08:47:44] apptainer works
[2025-11-24 08:47:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:47:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:47:44] Starting ATLAS job with PandaID=6895358607
[2025-11-24 08:47:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:01:58]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:01:58] 2025-11-25 09:00:51,870 | INFO     | number of running child processes to parent process 12922: 1
[2025-11-25 04:01:58] 2025-11-25 09:00:51,870 | INFO     | maximum number of monitored processes: 16
[2025-11-25 04:01:58] 2025-11-25 09:00:52,360 | INFO     | time since job start (69174s) is within the limit (172800.0s)
[2025-11-25 04:01:58] 2025-11-25 09:00:52,857 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 04:01:58] 2025-11-25 09:00:52,863 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2394.75
[2025-11-25 04:01:58] 2025-11-25 09:00:52,867 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895358607/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:01:58] 2025-11-25 09:00:52,868 | INFO     | extracted standard info from prmon json
[2025-11-25 04:01:58] 2025-11-25 09:00:52,868 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:01:58] 2025-11-25 09:00:52,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:01:58] 2025-11-25 09:00:52,898 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:01:58] 2025-11-25 09:00:52,900 | INFO     | sum of square deviations: 452185042318.7065
[2025-11-25 04:01:58] 2025-11-25 09:00:52,932 | INFO     | sum of deviations: 2273004855878.122
[2025-11-25 04:01:58] 2025-11-25 09:00:52,932 | INFO     | mean x: 1764026662.2883599
[2025-11-25 04:01:58] 2025-11-25 09:00:52,932 | INFO     | mean y: 2868245.9109347444
[2025-11-25 04:01:58] 2025-11-25 09:00:52,932 | INFO     | intersect: -8864389168.707098
[2025-11-25 04:01:58] 2025-11-25 09:00:52,933 | INFO     | chi2: 5.419163433743403
[2025-11-25 04:01:58] 2025-11-25 09:00:52,934 | INFO     | sum of square deviations: 446230347518.0844
[2025-11-25 04:01:58] 2025-11-25 09:00:52,957 | INFO     | sum of deviations: 2615215717448.699
[2025-11-25 04:01:58] 2025-11-25 09:00:52,957 | INFO     | mean x: 1764026509.7918513
[2025-11-25 04:01:58] 2025-11-25 09:00:52,957 | INFO     | mean y: 2877005.032772365
[2025-11-25 04:01:58] 2025-11-25 09:00:52,957 | INFO     | intersect: -10335527543.342005
[2025-11-25 04:01:58] 2025-11-25 09:00:52,958 | INFO     | chi2: 2.738293162666309
[2025-11-25 04:01:58] 2025-11-25 09:00:52,958 | INFO     | current chi2=2.738293162666309 (change=49.470186752150155 %)
[2025-11-25 04:01:58] 2025-11-25 09:00:52,959 | INFO     | sum of square deviations: 440328165329.93604
[2025-11-25 04:01:58] 2025-11-25 09:00:52,982 | INFO     | sum of deviations: 2722563670052.625
[2025-11-25 04:01:58] 2025-11-25 09:00:52,982 | INFO     | mean x: 1764026357.2953737
[2025-11-25 04:01:58] 2025-11-25 09:00:52,982 | INFO     | mean y: 2879774.8896797155
[2025-11-25 04:01:58] 2025-11-25 09:00:52,983 | INFO     | intersect: -10904153777.663181
[2025-11-25 04:01:58] 2025-11-25 09:00:52,984 | INFO     | chi2: 2.310939445980297
[2025-11-25 04:01:58] 2025-11-25 09:00:52,984 | INFO     | current chi2=2.310939445980297 (change=15.60657282837797 %)
[2025-11-25 04:01:58] 2025-11-25 09:00:52,984 | INFO     | right removable region: 1123
[2025-11-25 04:01:58] 2025-11-25 09:00:52,985 | INFO     | sum of square deviations: 446229802178.08466
[2025-11-25 04:01:58] 2025-11-25 09:00:53,008 | INFO     | sum of deviations: 1996591309262.731
[2025-11-25 04:01:58] 2025-11-25 09:00:53,008 | INFO     | mean x: 1764026814.7918513
[2025-11-25 04:01:58] 2025-11-25 09:00:53,008 | INFO     | mean y: 2875314.688219663
[2025-11-25 04:01:58] 2025-11-25 09:00:53,008 | INFO     | intersect: -7890009899.451345
[2025-11-25 04:01:58] 2025-11-25 09:00:53,009 | INFO     | chi2: 3.4739835912609154
[2025-11-25 04:01:58] 2025-11-25 09:00:53,009 | INFO     | current chi2=3.4739835912609154 (change=35.894467222938374 %)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,010 | INFO     | sum of square deviations: 440327418997.8674
[2025-11-25 04:01:58] 2025-11-25 09:00:53,047 | INFO     | sum of deviations: 1908100739352.858
[2025-11-25 04:01:58] 2025-11-25 09:00:53,047 | INFO     | mean x: 1764026967.2909253
[2025-11-25 04:01:58] 2025-11-25 09:00:53,048 | INFO     | mean y: 2877600.6334519573
[2025-11-25 04:01:58] 2025-11-25 09:00:53,048 | INFO     | intersect: -7641300379.89448
[2025-11-25 04:01:58] 2025-11-25 09:00:53,049 | INFO     | chi2: 3.3920759561963902
[2025-11-25 04:01:58] 2025-11-25 09:00:53,050 | INFO     | current chi2=3.3920759561963902 (change=2.3577438670283413 %)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,050 | INFO     | left removable region: 20
[2025-11-25 04:01:58] 2025-11-25 09:00:53,051 | INFO     | sum of square deviations: 416105963669.9146
[2025-11-25 04:01:58] 2025-11-25 09:00:53,093 | INFO     | sum of deviations: 2232588519618.5815
[2025-11-25 04:01:58] 2025-11-25 09:00:53,093 | INFO     | mean x: 1764026936.7978241
[2025-11-25 04:01:58] 2025-11-25 09:00:53,093 | INFO     | mean y: 2892725.1595648234
[2025-11-25 04:01:58] 2025-11-25 09:00:53,094 | INFO     | intersect: -9461874981.262775
[2025-11-25 04:01:58] 2025-11-25 09:00:53,095 | INFO     | chi2: 0.21946951722382738
[2025-11-25 04:01:58] 2025-11-25 09:00:53,096 | INFO     | current memory leak: 5.37 B/s (using 1103 data points, chi2=0.22)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,097 | INFO     | could have reported an average CPU frequency of 2584 MHz (41 samples)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,097 | INFO     | ..............................
[2025-11-25 04:01:58] 2025-11-25 09:00:53,097 | INFO     | . Timing measurements:
[2025-11-25 04:01:58] 2025-11-25 09:00:53,097 | INFO     | . get job = 0 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | . initial setup = 2 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | . payload setup = 6 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | . stage-in = 0 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | . payload execution = 69141 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | . stage-out = 4 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | . log creation = 0 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,098 | INFO     | ..............................
[2025-11-25 04:01:58] 2025-11-25 09:00:53,453 | INFO     | 
[2025-11-25 04:01:58] 2025-11-25 09:00:53,453 | INFO     | job summary report
[2025-11-25 04:01:58] 2025-11-25 09:00:53,454 | INFO     | --------------------------------------------------
[2025-11-25 04:01:58] 2025-11-25 09:00:53,454 | INFO     | PanDA job id: 6895358607
[2025-11-25 04:01:58] 2025-11-25 09:00:53,454 | INFO     | task id: 47556137
[2025-11-25 04:01:58] 2025-11-25 09:00:53,454 | INFO     | errors: (none)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,454 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:01:58] 2025-11-25 09:00:53,454 | INFO     | pilot state: finished 
[2025-11-25 04:01:58] 2025-11-25 09:00:53,455 | INFO     | transexitcode: 0
[2025-11-25 04:01:58] 2025-11-25 09:00:53,455 | INFO     | exeerrorcode: 0
[2025-11-25 04:01:58] 2025-11-25 09:00:53,455 | INFO     | exeerrordiag: 
[2025-11-25 04:01:58] 2025-11-25 09:00:53,455 | INFO     | exitcode: 0
[2025-11-25 04:01:58] 2025-11-25 09:00:53,455 | INFO     | exitmsg: OK
[2025-11-25 04:01:58] 2025-11-25 09:00:53,455 | INFO     | cpuconsumptiontime: 535562 s
[2025-11-25 04:01:58] 2025-11-25 09:00:53,456 | INFO     | nevents: 1000
[2025-11-25 04:01:58] 2025-11-25 09:00:53,456 | INFO     | neventsw: 0
[2025-11-25 04:01:58] 2025-11-25 09:00:53,456 | INFO     | pid: 12922
[2025-11-25 04:01:58] 2025-11-25 09:00:53,456 | INFO     | pgrp: 12922
[2025-11-25 04:01:58] 2025-11-25 09:00:53,456 | INFO     | corecount: 8
[2025-11-25 04:01:58] 2025-11-25 09:00:53,456 | INFO     | event service: False
[2025-11-25 04:01:58] 2025-11-25 09:00:53,457 | INFO     | sizes: {0: 2283482, 1: 2284338, 5: 2284600, 12: 2284656, 69151: 2340802, 69155: 2349985, 69159: 2350271}
[2025-11-25 04:01:58] 2025-11-25 09:00:53,457 | INFO     | --------------------------------------------------
[2025-11-25 04:01:58] 2025-11-25 09:00:53,461 | INFO     | 
[2025-11-25 04:01:58] 2025-11-25 09:00:53,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 04:01:58] 2025-11-25 09:00:53,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,487 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:01:58] 2025-11-25 09:00:53,488 | INFO     | job 6895358607 has completed (purged errors)
[2025-11-25 04:01:58] 2025-11-25 09:00:53,488 | INFO     | overall cleanup function is called
[2025-11-25 04:01:58] 2025-11-25 09:00:54,502 | INFO     | --- collectZombieJob: --- 10, [12922]
[2025-11-25 04:01:58] 2025-11-25 09:00:54,502 | INFO     | zombie collector waiting for pid 12922
[2025-11-25 04:01:58] 2025-11-25 09:00:54,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:01:58] 2025-11-25 09:00:54,503 | INFO     | collected zombie processes
[2025-11-25 04:01:58] 2025-11-25 09:00:54,503 | INFO     | will attempt to kill all subprocesses of pid=12922
[2025-11-25 04:01:58] 2025-11-25 09:00:54,669 | INFO     | process IDs to be killed: [12922] (in reverse order)
[2025-11-25 04:01:58] 2025-11-25 09:00:54,728 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:01:58] 2025-11-25 09:00:54,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:01:58] 2025-11-25 09:00:54,734 | INFO     | did not find any defunct processes belonging to 12922
[2025-11-25 04:01:58] 2025-11-25 09:00:54,739 | INFO     | did not find any defunct processes belonging to 12922
[2025-11-25 04:01:58] 2025-11-25 09:00:54,741 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:01:58] 2025-11-25 09:00:54,741 | INFO     | ready for new job
[2025-11-25 04:01:58] 2025-11-25 09:00:54,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:01:58] 2025-11-25 09:00:54,746 | INFO     | ***************************************
[2025-11-25 04:01:58] 2025-11-25 09:00:54,747 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:01:58] 2025-11-25 09:00:54,747 | INFO     | ***************************************
[2025-11-25 04:01:58] 2025-11-25 09:00:54,747 | INFO     | 
[2025-11-25 04:01:58] 2025-11-25 09:00:54,748 | INFO     | architecture information:
[2025-11-25 04:01:58] 2025-11-25 09:00:54,749 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:01:58] 2025-11-25 09:00:54,762 | INFO     | cat /etc/os-release:
[2025-11-25 04:01:58] NAME="CentOS Linux"
[2025-11-25 04:01:58] VERSION="7 (Core)"
[2025-11-25 04:01:58] ID="centos"
[2025-11-25 04:01:58] ID_LIKE="rhel fedora"
[2025-11-25 04:01:58] VERSION_ID="7"
[2025-11-25 04:01:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:01:58] ANSI_COLOR="0;31"
[2025-11-25 04:01:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:01:58] HOME_URL="https://www.centos.org/"
[2025-11-25 04:01:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:01:58] 
[2025-11-25 04:01:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:01:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:01:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:01:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:01:58] 
[2025-11-25 04:01:58] 2025-11-25 09:00:54,763 | INFO     | ***************************************
[2025-11-25 04:01:58] 2025-11-25 09:00:55,266 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 04:01:58] 2025-11-25 09:00:55,284 | INFO     | sufficient remaining disk space (24884805632 B)
[2025-11-25 04:01:58] 2025-11-25 09:00:55,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:01:58] 2025-11-25 09:00:55,284 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:01:58] 2025-11-25 09:00:55,284 | INFO     | update_server=False
[2025-11-25 04:01:58] 2025-11-25 09:00:55,285 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:01:58] 2025-11-25 09:00:55,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:01:58] 2025-11-25 09:00:55,413 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:01:58] 2025-11-25 09:00:55,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:01:58] 2025-11-25 09:00:55,413 | INFO     | aborting loop
[2025-11-25 04:01:58] 2025-11-25 09:00:55,938 | INFO     | all payload control threads have been joined
[2025-11-25 04:01:58] 2025-11-25 09:00:56,138 | INFO     | all job control threads have been joined
[2025-11-25 04:01:58] 2025-11-25 09:00:56,285 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,327 | INFO     | all data control threads have been joined
[2025-11-25 04:01:58] 2025-11-25 09:00:56,367 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,419 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,485 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,498 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,570 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,782 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,943 | INFO     | [payload] control thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:56,979 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:57,008 | INFO     | [job] validate thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:57,143 | INFO     | [job] control thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:57,291 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:57,298 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:57,328 | INFO     | [data] control thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:58,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:01:58] 2025-11-25 09:00:59,280 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:00:59,422 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:01:58] 2025-11-25 09:01:25,571 | INFO     | PID=25821 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 04:01:58] 2025-11-25 09:01:25,571 | INFO     | .. there are 3 such processes running
[2025-11-25 04:01:58] 2025-11-25 09:01:25,571 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:01:58] 2025-11-25 09:01:25,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:01:58] 2025-11-25 09:01:25,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:01:58] 2025-11-25 09:01:52,904 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:01:58] 2025-11-25 09:01:53,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006511593280)>', '<ExcThread(monitor, started 140005783623424)>']
[2025-11-25 04:01:58] 2025-11-25 09:01:53,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:01:58] 2025-11-25 09:01:53,715 | INFO     | [monitor] control thread has ended
[2025-11-25 04:01:58] 2025-11-25 09:01:58,636 | INFO     | all workflow threads have been joined
[2025-11-25 04:01:58] 2025-11-25 09:01:58,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:01:58] 2025-11-25 09:01:58,637 | INFO     | traces error code: 0
[2025-11-25 04:01:58] 2025-11-25 09:01:58,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:01:58] 2025-11-25 09:01:58,760 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:01:58] 2025-11-25 09:01:58,763 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:01:58] 2025-11-25 09:01:58,765 [wrapper] pilotpid: 25821
[2025-11-25 04:01:58] 2025-11-25 09:01:58,767 [wrapper] Pilot exit status: 0
[2025-11-25 04:01:58] 2025-11-25 09:01:58,775 [wrapper] pandaids: 6895358607 6895358607
[2025-11-25 04:01:58] 2025-11-25 09:01:58,815 [wrapper] cleanup supervisor_pilot 19187 25822
[2025-11-25 04:01:58] 2025-11-25 09:01:58,818 [wrapper] Test setup, not cleaning
[2025-11-25 04:01:58] 2025-11-25 09:01:58,821 [wrapper] apfmon messages muted
[2025-11-25 04:01:58] 2025-11-25 09:01:58,824 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:01:58] 2025-11-25 09:01:58,826 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:01:58]  *** Error codes and diagnostics ***
[2025-11-25 04:01:58]     "exeErrorCode": 0,
[2025-11-25 04:01:58]     "exeErrorDiag": "",
[2025-11-25 04:01:58]     "pilotErrorCode": 0,
[2025-11-25 04:01:58]     "pilotErrorDiag": "",
[2025-11-25 04:01:58]  *** Listing of results directory ***
[2025-11-25 04:01:58] total 1712696
[2025-11-25 04:01:58] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 07:50 pilot3.tar.gz
[2025-11-25 04:01:58] -rwx------ 1 boincer umatlas     36292 Nov 23 07:59 runpilot2-wrapper.sh
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 07:59 queuedata.json
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas       100 Nov 24 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:01:58] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 03:14 run_atlas
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas       105 Nov 24 03:14 job.xml
[2025-11-25 04:01:58] -rw-r--r-- 3 boincer umatlas 407983507 Nov 24 03:14 EVNT.47483658._000737.pool.root.1
[2025-11-25 04:01:58] -rw-r--r-- 3 boincer umatlas 407983507 Nov 24 03:14 ATLAS.root_0
[2025-11-25 04:01:58] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:14 start_atlas.sh
[2025-11-25 04:01:58] drwxrwx--x 2 boincer umatlas      4096 Nov 24 03:14 shared
[2025-11-25 04:01:58] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 03:14 input.tar.gz
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas         0 Nov 24 03:14 boinc_lockfile
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas      2786 Nov 24 08:47 pandaJob.out
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas        57 Nov 24 08:47 setup.sh.local
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas    988280 Nov 24 08:47 agis_schedconf.cvmfs.json
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas       533 Nov 25 03:50 boinc_task_state.xml
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 03:55 init_data.xml
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas 910193792 Nov 25 04:00 HITS.47556137._007330.pool.root.1
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas        96 Nov 25 04:00 pilot_heartbeat.json
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas      1074 Nov 25 04:00 memory_monitor_summary.json
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas   1516240 Nov 25 04:00 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas   2289390 Nov 25 04:00 log.47556137._007330.job.log.tgz.1
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas      8658 Nov 25 04:00 heartbeat.json
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 04:01 boinc_mmap_file
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas        29 Nov 25 04:01 wrapper_checkpoint.txt
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas      4821 Nov 25 04:01 pilotlog.txt
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas   9566530 Nov 25 04:01 log.47556137._007330.job.log.1
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas       353 Nov 25 04:01 output.list
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas       620 Nov 25 04:01 runtime_log
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas  11878400 Nov 25 04:01 result.tar.gz
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas       793 Nov 25 04:01 ryhLDm7rOh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuXIKDmGbZE1m.diag
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 04:01 runtime_log.err
[2025-11-25 04:01:58] -rw-r--r-- 1 boincer umatlas     23401 Nov 25 04:01 stderr.txt
[2025-11-25 04:01:58] HITS file was successfully produced:
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas 910193792 Nov 25 04:00 shared/HITS.pool.root.1
[2025-11-25 04:01:58]  *** Contents of shared directory: ***
[2025-11-25 04:01:58] total 1299492
[2025-11-25 04:01:58] -rw-r--r-- 3 boincer umatlas 407983507 Nov 24 03:14 ATLAS.root_0
[2025-11-25 04:01:58] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:14 start_atlas.sh
[2025-11-25 04:01:58] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 03:14 input.tar.gz
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas 910193792 Nov 25 04:00 HITS.pool.root.1
[2025-11-25 04:01:58] -rw------- 1 boincer umatlas  11878400 Nov 25 04:01 result.tar.gz
04:02:00 (14752): run_atlas exited; CPU time 534724.694566
04:02:00 (14752): called boinc_finish(0)

</stderr_txt>
]]>

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