Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:35:31 (3766): wrapper (7.7.26015): starting
03:35:31 (3766): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:35:31] Arguments: --nthreads 8
[2025-11-24 03:35:31] Threads: 8
[2025-11-24 03:35:31] Checking for CVMFS
[2025-11-24 03:35:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:35:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:35:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:35:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:35:31] 2.11.2.0 14729 114555 145752 153239 2 81 16838255 18432000 1717 130560 0 82597314 99.974 4765396 29312 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 03:35:31] CVMFS is ok
[2025-11-24 03:35:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:35:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:35:31] Further information can be found at the LHC@home message board.
[2025-11-24 03:35:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:35:31] Checking for apptainer binary...
[2025-11-24 03:35:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:35:31] Running /usr/bin/apptainer --version
[2025-11-24 03:35:31] apptainer version 1.3.2-1.el7
[2025-11-24 03:35:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:35:32] c-206-30.aglt2.org
[2025-11-24 03:35:32] apptainer works
[2025-11-24 03:35:32] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:35:32] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:35:32] Starting ATLAS job with PandaID=6895341387
[2025-11-24 03:35:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:09:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:09:53] 2025-11-25 04:09:20,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,564 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 23:09:53] 2025-11-25 04:09:20,568 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2183.9166666666665
[2025-11-24 23:09:53] 2025-11-25 04:09:20,571 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895341387/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,572 | INFO     | extracted standard info from prmon json
[2025-11-24 23:09:53] 2025-11-25 04:09:20,572 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:09:53] 2025-11-25 04:09:20,572 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:09:53] 2025-11-25 04:09:20,589 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:09:53] 2025-11-25 04:09:20,590 | INFO     | sum of square deviations: 476535885091.9727
[2025-11-24 23:09:53] 2025-11-25 04:09:20,617 | INFO     | sum of deviations: 2229359163359.8823
[2025-11-24 23:09:53] 2025-11-25 04:09:20,617 | INFO     | mean x: 1764008534.117851
[2025-11-24 23:09:53] 2025-11-25 04:09:20,617 | INFO     | mean y: 2876332.500866551
[2025-11-24 23:09:53] 2025-11-25 04:09:20,617 | INFO     | intersect: -8249615689.210489
[2025-11-24 23:09:53] 2025-11-25 04:09:20,618 | INFO     | chi2: 4.695136392252191
[2025-11-24 23:09:53] 2025-11-25 04:09:20,620 | INFO     | sum of square deviations: 470368759012.5557
[2025-11-24 23:09:53] 2025-11-25 04:09:20,646 | INFO     | sum of deviations: 2537255997350.779
[2025-11-24 23:09:53] 2025-11-25 04:09:20,646 | INFO     | mean x: 1764008381.6205397
[2025-11-24 23:09:53] 2025-11-25 04:09:20,646 | INFO     | mean y: 2883941.5178416013
[2025-11-24 23:09:53] 2025-11-25 04:09:20,647 | INFO     | intersect: -9512503209.277782
[2025-11-24 23:09:53] 2025-11-25 04:09:20,648 | INFO     | chi2: 2.4738095899032353
[2025-11-24 23:09:53] 2025-11-25 04:09:20,648 | INFO     | current chi2=2.4738095899032353 (change=47.311230532398156 %)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,649 | INFO     | sum of square deviations: 464255075795.6211
[2025-11-24 23:09:53] 2025-11-25 04:09:20,675 | INFO     | sum of deviations: 2654640634765.4897
[2025-11-24 23:09:53] 2025-11-25 04:09:20,676 | INFO     | mean x: 1764008229.1232517
[2025-11-24 23:09:53] 2025-11-25 04:09:20,676 | INFO     | mean y: 2886867.868881119
[2025-11-24 23:09:53] 2025-11-25 04:09:20,676 | INFO     | intersect: -10083826599.002954
[2025-11-24 23:09:53] 2025-11-25 04:09:20,677 | INFO     | chi2: 2.0548060624721085
[2025-11-24 23:09:53] 2025-11-25 04:09:20,677 | INFO     | current chi2=2.0548060624721085 (change=16.93758198453408 %)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,677 | INFO     | right removable region: 1143
[2025-11-24 23:09:53] 2025-11-25 04:09:20,678 | INFO     | sum of square deviations: 470368324082.5555
[2025-11-24 23:09:53] 2025-11-25 04:09:20,711 | INFO     | sum of deviations: 1963779359591.4263
[2025-11-24 23:09:53] 2025-11-25 04:09:20,712 | INFO     | mean x: 1764008686.6205397
[2025-11-24 23:09:53] 2025-11-25 04:09:20,712 | INFO     | mean y: 2882889.863359443
[2025-11-24 23:09:53] 2025-11-25 04:09:20,712 | INFO     | intersect: -7361821899.053081
[2025-11-24 23:09:53] 2025-11-25 04:09:20,714 | INFO     | chi2: 2.9072021404843778
[2025-11-24 23:09:53] 2025-11-25 04:09:20,714 | INFO     | current chi2=2.9072021404843778 (change=38.08056044374393 %)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,716 | INFO     | sum of square deviations: 464254205935.6217
[2025-11-24 23:09:53] 2025-11-25 04:09:20,752 | INFO     | sum of deviations: 1892102443114.6416
[2025-11-24 23:09:53] 2025-11-25 04:09:20,752 | INFO     | mean x: 1764008839.1232517
[2025-11-24 23:09:53] 2025-11-25 04:09:20,752 | INFO     | mean y: 2884677.56993007
[2025-11-24 23:09:53] 2025-11-25 04:09:20,752 | INFO     | intersect: -7186464156.555151
[2025-11-24 23:09:53] 2025-11-25 04:09:20,754 | INFO     | chi2: 2.8650956213482606
[2025-11-24 23:09:53] 2025-11-25 04:09:20,754 | INFO     | current chi2=2.8650956213482606 (change=1.4483519583919158 %)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,754 | INFO     | left removable region: 20
[2025-11-24 23:09:53] 2025-11-25 04:09:20,756 | INFO     | sum of square deviations: 439154490483.37714
[2025-11-24 23:09:53] 2025-11-25 04:09:20,782 | INFO     | sum of deviations: 2209539722636.137
[2025-11-24 23:09:53] 2025-11-25 04:09:20,782 | INFO     | mean x: 1764008808.6313446
[2025-11-24 23:09:53] 2025-11-25 04:09:20,783 | INFO     | mean y: 2898568.3312555654
[2025-11-24 23:09:53] 2025-11-25 04:09:20,783 | INFO     | intersect: -8872446254.992458
[2025-11-24 23:09:53] 2025-11-25 04:09:20,784 | INFO     | chi2: 0.16526539556730171
[2025-11-24 23:09:53] 2025-11-25 04:09:20,784 | INFO     | current memory leak: 5.03 B/s (using 1123 data points, chi2=0.17)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,785 | INFO     | could have reported an average CPU frequency of 2590 MHz (42 samples)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,785 | INFO     | ..............................
[2025-11-24 23:09:53] 2025-11-25 04:09:20,785 | INFO     | . Timing measurements:
[2025-11-24 23:09:53] 2025-11-25 04:09:20,785 | INFO     | . get job = 0 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,785 | INFO     | . initial setup = 2 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,785 | INFO     | . payload setup = 5 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,786 | INFO     | . stage-in = 0 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,786 | INFO     | . payload execution = 70384 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,786 | INFO     | . stage-out = 3 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,786 | INFO     | . log creation = 0 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,786 | INFO     | ..............................
[2025-11-24 23:09:53] 2025-11-25 04:09:20,996 | INFO     | 
[2025-11-24 23:09:53] 2025-11-25 04:09:20,997 | INFO     | job summary report
[2025-11-24 23:09:53] 2025-11-25 04:09:20,997 | INFO     | --------------------------------------------------
[2025-11-24 23:09:53] 2025-11-25 04:09:20,997 | INFO     | PanDA job id: 6895341387
[2025-11-24 23:09:53] 2025-11-25 04:09:20,997 | INFO     | task id: 47556137
[2025-11-24 23:09:53] 2025-11-25 04:09:20,997 | INFO     | errors: (none)
[2025-11-24 23:09:53] 2025-11-25 04:09:20,997 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | pilot state: finished 
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | transexitcode: 0
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | exeerrorcode: 0
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | exeerrordiag: 
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | exitcode: 0
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | exitmsg: OK
[2025-11-24 23:09:53] 2025-11-25 04:09:20,998 | INFO     | cpuconsumptiontime: 544743 s
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | nevents: 1000
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | neventsw: 0
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | pid: 15088
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | pgrp: 15088
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | corecount: 8
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | event service: False
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | sizes: {0: 2297877, 1: 2298733, 4: 2298995, 12: 2299023, 70393: 2355625, 70396: 2365594, 70403: 2365784}
[2025-11-24 23:09:53] 2025-11-25 04:09:20,999 | INFO     | --------------------------------------------------
[2025-11-24 23:09:53] 2025-11-25 04:09:21,000 | INFO     | 
[2025-11-24 23:09:53] 2025-11-25 04:09:21,000 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 23:09:53] 2025-11-25 04:09:21,018 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,019 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:09:53] 2025-11-25 04:09:21,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:09:53] 2025-11-25 04:09:21,021 | INFO     | job 6895341387 has completed (purged errors)
[2025-11-24 23:09:53] 2025-11-25 04:09:21,021 | INFO     | overall cleanup function is called
[2025-11-24 23:09:53] 2025-11-25 04:09:22,034 | INFO     | --- collectZombieJob: --- 10, [15088]
[2025-11-24 23:09:53] 2025-11-25 04:09:22,035 | INFO     | zombie collector waiting for pid 15088
[2025-11-24 23:09:53] 2025-11-25 04:09:22,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:09:53] 2025-11-25 04:09:22,035 | INFO     | collected zombie processes
[2025-11-24 23:09:53] 2025-11-25 04:09:22,035 | INFO     | will attempt to kill all subprocesses of pid=15088
[2025-11-24 23:09:53] 2025-11-25 04:09:22,196 | INFO     | process IDs to be killed: [15088] (in reverse order)
[2025-11-24 23:09:53] 2025-11-25 04:09:22,241 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:09:53] 2025-11-25 04:09:22,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:09:53] 2025-11-25 04:09:22,247 | INFO     | did not find any defunct processes belonging to 15088
[2025-11-24 23:09:53] 2025-11-25 04:09:22,252 | INFO     | did not find any defunct processes belonging to 15088
[2025-11-24 23:09:53] 2025-11-25 04:09:22,254 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:09:53] 2025-11-25 04:09:22,255 | INFO     | ready for new job
[2025-11-24 23:09:53] 2025-11-25 04:09:22,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:09:53] 2025-11-25 04:09:22,261 | INFO     | ***************************************
[2025-11-24 23:09:53] 2025-11-25 04:09:22,261 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:09:53] 2025-11-25 04:09:22,261 | INFO     | ***************************************
[2025-11-24 23:09:53] 2025-11-25 04:09:22,261 | INFO     | 
[2025-11-24 23:09:53] 2025-11-25 04:09:22,263 | INFO     | architecture information:
[2025-11-24 23:09:53] 2025-11-25 04:09:22,263 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:09:53] 2025-11-25 04:09:22,275 | INFO     | cat /etc/os-release:
[2025-11-24 23:09:53] NAME="CentOS Linux"
[2025-11-24 23:09:53] VERSION="7 (Core)"
[2025-11-24 23:09:53] ID="centos"
[2025-11-24 23:09:53] ID_LIKE="rhel fedora"
[2025-11-24 23:09:53] VERSION_ID="7"
[2025-11-24 23:09:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:09:53] ANSI_COLOR="0;31"
[2025-11-24 23:09:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:09:53] HOME_URL="https://www.centos.org/"
[2025-11-24 23:09:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:09:53] 
[2025-11-24 23:09:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:09:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:09:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:09:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:09:53] 
[2025-11-24 23:09:53] 2025-11-25 04:09:22,275 | INFO     | ***************************************
[2025-11-24 23:09:53] 2025-11-25 04:09:22,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 23:09:53] 2025-11-25 04:09:22,794 | INFO     | sufficient remaining disk space (24862785536 B)
[2025-11-24 23:09:53] 2025-11-25 04:09:22,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:09:53] 2025-11-25 04:09:22,795 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:09:53] 2025-11-25 04:09:22,795 | INFO     | update_server=False
[2025-11-24 23:09:53] 2025-11-25 04:09:22,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:09:53] 2025-11-25 04:09:22,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:09:53] 2025-11-25 04:09:22,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:09:53] 2025-11-25 04:09:23,158 | INFO     | all data control threads have been joined
[2025-11-24 23:09:53] 2025-11-25 04:09:23,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:09:53] 2025-11-25 04:09:23,655 | INFO     | aborting loop
[2025-11-24 23:09:53] 2025-11-25 04:09:23,800 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:23,801 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:23,871 | INFO     | all payload control threads have been joined
[2025-11-24 23:09:53] 2025-11-25 04:09:24,164 | INFO     | [data] control thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,374 | INFO     | all job control threads have been joined
[2025-11-24 23:09:53] 2025-11-25 04:09:24,475 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,501 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,504 | INFO     | [job] validate thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,660 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,677 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,745 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,801 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:24,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:09:53] 2025-11-25 04:09:24,876 | INFO     | [payload] control thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:25,075 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:25,185 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:25,376 | INFO     | [job] control thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:28,866 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:33,326 | INFO     | job.realtimelogging is not enabled
[2025-11-24 23:09:53] 2025-11-25 04:09:34,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:09:53] 2025-11-25 04:09:39,683 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:09:53] 2025-11-25 04:09:41,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883019704128)>', '<ExcThread(monitor, started 139882420745984)>']
[2025-11-24 23:09:53] 2025-11-25 04:09:46,062 | INFO     | all workflow threads have been joined
[2025-11-24 23:09:53] 2025-11-25 04:09:46,063 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:09:53] 2025-11-25 04:09:46,063 | INFO     | traces error code: 0
[2025-11-24 23:09:53] 2025-11-25 04:09:46,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:09:53] 2025-11-25 04:09:53,244 | INFO     | PID=7519 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 23:09:53] 2025-11-25 04:09:53,245 | INFO     | .. there are 3 such processes running
[2025-11-24 23:09:53] 2025-11-25 04:09:53,246 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:09:53] 2025-11-25 04:09:53,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:09:53] 2025-11-25 04:09:53,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:09:53] 2025-11-25 04:09:53,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:09:53] 2025-11-25 04:09:53,246 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 23:09:53] 2025-11-25 04:09:53,246 | INFO     | [monitor] control thread has ended
[2025-11-24 23:09:53] 2025-11-25 04:09:53,344 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:09:53] 2025-11-25 04:09:53,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:09:53] 2025-11-25 04:09:53,351 [wrapper] pilotpid: 7519
[2025-11-24 23:09:53] 2025-11-25 04:09:53,354 [wrapper] Pilot exit status: 0
[2025-11-24 23:09:53] 2025-11-25 04:09:53,364 [wrapper] pandaids: 6895341387
[2025-11-24 23:09:53] 2025-11-25 04:09:53,400 [wrapper] cleanup supervisor_pilot  5033 7520
[2025-11-24 23:09:53] 2025-11-25 04:09:53,403 [wrapper] Test setup, not cleaning
[2025-11-24 23:09:53] 2025-11-25 04:09:53,406 [wrapper] apfmon messages muted
[2025-11-24 23:09:53] 2025-11-25 04:09:53,409 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:09:53] 2025-11-25 04:09:53,412 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:09:53]  *** Error codes and diagnostics ***
[2025-11-24 23:09:53]     "exeErrorCode": 0,
[2025-11-24 23:09:53]     "exeErrorDiag": "",
[2025-11-24 23:09:53]     "pilotErrorCode": 0,
[2025-11-24 23:09:53]     "pilotErrorDiag": "",
[2025-11-24 23:09:53]  *** Listing of results directory ***
[2025-11-24 23:09:53] total 1335752
[2025-11-24 23:09:53] -rwx------ 1 boincer umatlas     36292 Nov 22 10:04 runpilot2-wrapper.sh
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 10:04 queuedata.json
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 10:04 pilot3.tar.gz
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas       100 Nov 24 03:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:09:53] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 03:35 run_atlas
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas       105 Nov 24 03:35 job.xml
[2025-11-24 23:09:53] -rw-r--r-- 2 boincer umatlas 408545524 Nov 24 03:35 EVNT.47483658._000400.pool.root.1
[2025-11-24 23:09:53] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:35 start_atlas.sh
[2025-11-24 23:09:53] drwxrwx--x 2 boincer umatlas      4096 Nov 24 03:35 shared
[2025-11-24 23:09:53] -rw-r--r-- 2 boincer umatlas    590091 Nov 24 03:35 input.tar.gz
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas         0 Nov 24 03:35 boinc_lockfile
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas      2784 Nov 24 03:35 pandaJob.out
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas        57 Nov 24 03:35 setup.sh.local
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas    989794 Nov 24 03:35 agis_schedconf.cvmfs.json
[2025-11-24 23:09:53] drwx------ 5 boincer umatlas      4096 Nov 24 03:35 pilot3
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas       533 Nov 24 22:57 boinc_task_state.xml
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 23:00 init_data.xml
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas 931269204 Nov 24 23:08 HITS.47556137._003957.pool.root.1
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas      1069 Nov 24 23:09 memory_monitor_summary.json
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas   1516227 Nov 24 23:09 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas   2304407 Nov 24 23:09 log.47556137._003957.job.log.tgz.1
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas      8651 Nov 24 23:09 heartbeat.json
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 23:09 boinc_mmap_file
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas        29 Nov 24 23:09 wrapper_checkpoint.txt
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas        95 Nov 24 23:09 pilot_heartbeat.json
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas       889 Nov 24 23:09 pilotlog.txt
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas   9734018 Nov 24 23:09 log.47556137._003957.job.log.1
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas       353 Nov 24 23:09 output.list
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas       620 Nov 24 23:09 runtime_log
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas  12062720 Nov 24 23:09 result.tar.gz
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 23:09 runtime_log.err
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas       668 Nov 24 23:09 bxcKDmyK4g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHDKKDm8jr6Un.diag
[2025-11-24 23:09:53] -rw-r--r-- 1 boincer umatlas     21239 Nov 24 23:09 stderr.txt
[2025-11-24 23:09:53] HITS file was successfully produced:
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas 931269204 Nov 24 23:08 shared/HITS.pool.root.1
[2025-11-24 23:09:53]  *** Contents of shared directory: ***
[2025-11-24 23:09:53] total 1320800
[2025-11-24 23:09:53] -rw-r--r-- 2 boincer umatlas 408545524 Nov 24 03:35 ATLAS.root_0
[2025-11-24 23:09:53] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:35 start_atlas.sh
[2025-11-24 23:09:53] -rw-r--r-- 2 boincer umatlas    590091 Nov 24 03:35 input.tar.gz
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas 931269204 Nov 24 23:08 HITS.pool.root.1
[2025-11-24 23:09:53] -rw------- 1 boincer umatlas  12062720 Nov 24 23:09 result.tar.gz
23:09:54 (3766): run_atlas exited; CPU time 543637.538762
23:09:54 (3766): called boinc_finish(0)

</stderr_txt>
]]>

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