Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:46:22 (31201): wrapper (7.7.26015): starting
03:46:22 (31201): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:46:22] Arguments: --nthreads 8
[2025-11-24 03:46:22] Threads: 8
[2025-11-24 03:46:22] Checking for CVMFS
[2025-11-24 03:46:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:46:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:46:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:46:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:46:22] 2.11.2.0 28705 114741 149092 153239 2 82 9989046 18432000 1495 130560 0 83541746 99.974 4902432 32008 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 03:46:22] CVMFS is ok
[2025-11-24 03:46:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:46:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:46:22] Further information can be found at the LHC@home message board.
[2025-11-24 03:46:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:46:22] Checking for apptainer binary...
[2025-11-24 03:46:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:46:22] Running /usr/bin/apptainer --version
[2025-11-24 03:46:22] apptainer version 1.3.2-1.el7
[2025-11-24 03:46:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:46:23] c-206-27.aglt2.org
[2025-11-24 03:46:23] apptainer works
[2025-11-24 03:46:23] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:46:23] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:46:23] Starting ATLAS job with PandaID=6895351744
[2025-11-24 03:46:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:40:04 (31201): BOINC client no longer exists - exiting
08:40:04 (31201): timer handler: client dead, exiting
08:47:43 (14753): wrapper (7.7.26015): starting
08:47:43 (14753): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 08:47:43] Arguments: --nthreads 8
[2025-11-24 08:47:43] Threads: 8
[2025-11-24 08:47:43] This job has been restarted, cleaning up previous attempt
[2025-11-24 08:47:43] Checking for CVMFS
[2025-11-24 08:47:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:47:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:47:43] 2.11.2.0 28705 115042 141860 153247 1 57 10033703 18432001 1 130560 0 83873337 99.974 4914352 32012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 08:47:43] CVMFS is ok
[2025-11-24 08:47:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:47:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:47:43] Further information can be found at the LHC@home message board.
[2025-11-24 08:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:47:43] Checking for apptainer binary...
[2025-11-24 08:47:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:47:43] Running /usr/bin/apptainer --version
[2025-11-24 08:47:43] apptainer version 1.3.2-1.el7
[2025-11-24 08:47:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:47:44] c-206-27.aglt2.org
[2025-11-24 08:47:44] apptainer works
[2025-11-24 08:47:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 08:47:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 08:47:44] Starting ATLAS job with PandaID=6895351744
[2025-11-24 08:47:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:37:06]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:37:06] 2025-11-25 09:36:32,016 | INFO     | monitor loop #5093: job 0:6895351744 is in state 'finished'
[2025-11-25 04:37:06] 2025-11-25 09:36:32,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,543 | INFO     | time since job start (71314s) is within the limit (172800.0s)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,672 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 04:37:06] 2025-11-25 09:36:32,676 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2122.875
[2025-11-25 04:37:06] 2025-11-25 09:36:32,679 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895351744/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,679 | INFO     | extracted standard info from prmon json
[2025-11-25 04:37:06] 2025-11-25 09:36:32,679 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:37:06] 2025-11-25 09:36:32,680 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:37:06] 2025-11-25 09:36:32,695 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:37:06] 2025-11-25 09:36:32,696 | INFO     | sum of square deviations: 495358775072.27594
[2025-11-25 04:37:06] 2025-11-25 09:36:32,720 | INFO     | sum of deviations: 2445532484349.861
[2025-11-25 04:37:06] 2025-11-25 09:36:32,720 | INFO     | mean x: 1764027729.8203592
[2025-11-25 04:37:06] 2025-11-25 09:36:32,720 | INFO     | mean y: 2864456.6946107782
[2025-11-25 04:37:06] 2025-11-25 09:36:32,720 | INFO     | intersect: -8705948899.726078
[2025-11-25 04:37:06] 2025-11-25 09:36:32,721 | INFO     | chi2: 5.058937591568604
[2025-11-25 04:37:06] 2025-11-25 09:36:32,723 | INFO     | sum of square deviations: 489030000058.89355
[2025-11-25 04:37:06] 2025-11-25 09:36:32,747 | INFO     | sum of deviations: 2778698129568.854
[2025-11-25 04:37:06] 2025-11-25 09:36:32,748 | INFO     | mean x: 1764027577.323883
[2025-11-25 04:37:06] 2025-11-25 09:36:32,748 | INFO     | mean y: 2872478.713917526
[2025-11-25 04:37:06] 2025-11-25 09:36:32,748 | INFO     | intersect: -10020439238.414772
[2025-11-25 04:37:06] 2025-11-25 09:36:32,749 | INFO     | chi2: 2.5416945750845077
[2025-11-25 04:37:06] 2025-11-25 09:36:32,749 | INFO     | current chi2=2.5416945750845077 (change=49.75833306738985 %)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,750 | INFO     | sum of square deviations: 482755365595.4883
[2025-11-25 04:37:06] 2025-11-25 09:36:32,774 | INFO     | sum of deviations: 2831315580304.831
[2025-11-25 04:37:06] 2025-11-25 09:36:32,775 | INFO     | mean x: 1764027424.8274374
[2025-11-25 04:37:06] 2025-11-25 09:36:32,775 | INFO     | mean y: 2873753.2191544436
[2025-11-25 04:37:06] 2025-11-25 09:36:32,775 | INFO     | intersect: -10342983979.17103
[2025-11-25 04:37:06] 2025-11-25 09:36:32,776 | INFO     | chi2: 2.3165235021897796
[2025-11-25 04:37:06] 2025-11-25 09:36:32,776 | INFO     | current chi2=2.3165235021897796 (change=8.859092477200626 %)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,776 | INFO     | right removable region: 1158
[2025-11-25 04:37:06] 2025-11-25 09:36:32,777 | INFO     | sum of square deviations: 489029486134.5431
[2025-11-25 04:37:06] 2025-11-25 09:36:32,801 | INFO     | sum of deviations: 2160620916590.737
[2025-11-25 04:37:06] 2025-11-25 09:36:32,801 | INFO     | mean x: 1764027882.323024
[2025-11-25 04:37:06] 2025-11-25 09:36:32,801 | INFO     | mean y: 2871312.4501718213
[2025-11-25 04:37:06] 2025-11-25 09:36:32,801 | INFO     | intersect: -7790923638.694733
[2025-11-25 04:37:06] 2025-11-25 09:36:32,802 | INFO     | chi2: 3.1091113363140663
[2025-11-25 04:37:06] 2025-11-25 09:36:32,802 | INFO     | current chi2=3.1091113363140663 (change=38.542208121013076 %)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,803 | INFO     | sum of square deviations: 482754551126.7405
[2025-11-25 04:37:06] 2025-11-25 09:36:32,827 | INFO     | sum of deviations: 2067517787281.9683
[2025-11-25 04:37:06] 2025-11-25 09:36:32,827 | INFO     | mean x: 1764028034.8231235
[2025-11-25 04:37:06] 2025-11-25 09:36:32,827 | INFO     | mean y: 2873574.8144952543
[2025-11-25 04:37:06] 2025-11-25 09:36:32,827 | INFO     | intersect: -7552020171.393507
[2025-11-25 04:37:06] 2025-11-25 09:36:32,828 | INFO     | chi2: 3.0221140360478453
[2025-11-25 04:37:06] 2025-11-25 09:36:32,828 | INFO     | current chi2=3.0221140360478453 (change=2.798140396263795 %)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,828 | INFO     | left removable region: 20
[2025-11-25 04:37:06] 2025-11-25 09:36:32,829 | INFO     | sum of square deviations: 456986583813.42737
[2025-11-25 04:37:06] 2025-11-25 09:36:32,851 | INFO     | sum of deviations: 2317118854813.0747
[2025-11-25 04:37:06] 2025-11-25 09:36:32,852 | INFO     | mean x: 1764028004.3295255
[2025-11-25 04:37:06] 2025-11-25 09:36:32,852 | INFO     | mean y: 2886224.786467487
[2025-11-25 04:37:06] 2025-11-25 09:36:32,852 | INFO     | intersect: -8941495719.955702
[2025-11-25 04:37:06] 2025-11-25 09:36:32,853 | INFO     | chi2: 0.21533897974332641
[2025-11-25 04:37:06] 2025-11-25 09:36:32,853 | INFO     | current memory leak: 5.07 B/s (using 1138 data points, chi2=0.22)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | could have reported an average CPU frequency of 2575 MHz (42 samples)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | ..............................
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | . Timing measurements:
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | . get job = 0 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | . initial setup = 2 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | . payload setup = 6 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | . stage-in = 0 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,854 | INFO     | . payload execution = 71276 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,855 | INFO     | . stage-out = 3 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,855 | INFO     | . log creation = 0 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,855 | INFO     | ..............................
[2025-11-25 04:37:06] 2025-11-25 09:36:32,956 | INFO     | 
[2025-11-25 04:37:06] 2025-11-25 09:36:32,957 | INFO     | job summary report
[2025-11-25 04:37:06] 2025-11-25 09:36:32,957 | INFO     | --------------------------------------------------
[2025-11-25 04:37:06] 2025-11-25 09:36:32,957 | INFO     | PanDA job id: 6895351744
[2025-11-25 04:37:06] 2025-11-25 09:36:32,957 | INFO     | task id: 47556137
[2025-11-25 04:37:06] 2025-11-25 09:36:32,957 | INFO     | errors: (none)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:37:06] 2025-11-25 09:36:32,958 | INFO     | pilot state: finished 
[2025-11-25 04:37:06] 2025-11-25 09:36:32,958 | INFO     | transexitcode: 0
[2025-11-25 04:37:06] 2025-11-25 09:36:32,958 | INFO     | exeerrorcode: 0
[2025-11-25 04:37:06] 2025-11-25 09:36:32,958 | INFO     | exeerrordiag: 
[2025-11-25 04:37:06] 2025-11-25 09:36:32,958 | INFO     | exitcode: 0
[2025-11-25 04:37:06] 2025-11-25 09:36:32,959 | INFO     | exitmsg: OK
[2025-11-25 04:37:06] 2025-11-25 09:36:32,959 | INFO     | cpuconsumptiontime: 549930 s
[2025-11-25 04:37:06] 2025-11-25 09:36:32,959 | INFO     | nevents: 1000
[2025-11-25 04:37:06] 2025-11-25 09:36:32,959 | INFO     | neventsw: 0
[2025-11-25 04:37:06] 2025-11-25 09:36:32,959 | INFO     | pid: 12921
[2025-11-25 04:37:06] 2025-11-25 09:36:32,959 | INFO     | pgrp: 12921
[2025-11-25 04:37:06] 2025-11-25 09:36:32,960 | INFO     | corecount: 8
[2025-11-25 04:37:06] 2025-11-25 09:36:32,960 | INFO     | event service: False
[2025-11-25 04:37:06] 2025-11-25 09:36:32,960 | INFO     | sizes: {0: 2283482, 1: 2284338, 5: 2284600, 12: 2284656, 71287: 2341602, 71290: 2350601, 71292: 2350785, 71299: 2351031}
[2025-11-25 04:37:06] 2025-11-25 09:36:32,960 | INFO     | --------------------------------------------------
[2025-11-25 04:37:06] 2025-11-25 09:36:32,960 | INFO     | 
[2025-11-25 04:37:06] 2025-11-25 09:36:32,961 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,979 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:37:06] 2025-11-25 09:36:32,979 | INFO     | job 6895351744 has completed (purged errors)
[2025-11-25 04:37:06] 2025-11-25 09:36:32,979 | INFO     | overall cleanup function is called
[2025-11-25 04:37:06] 2025-11-25 09:36:33,991 | INFO     | --- collectZombieJob: --- 10, [12921]
[2025-11-25 04:37:06] 2025-11-25 09:36:33,991 | INFO     | zombie collector waiting for pid 12921
[2025-11-25 04:37:06] 2025-11-25 09:36:33,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:37:06] 2025-11-25 09:36:33,992 | INFO     | collected zombie processes
[2025-11-25 04:37:06] 2025-11-25 09:36:33,992 | INFO     | will attempt to kill all subprocesses of pid=12921
[2025-11-25 04:37:06] 2025-11-25 09:36:34,102 | INFO     | process IDs to be killed: [12921] (in reverse order)
[2025-11-25 04:37:06] 2025-11-25 09:36:34,141 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:37:06] 2025-11-25 09:36:34,141 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:37:06] 2025-11-25 09:36:34,144 | INFO     | did not find any defunct processes belonging to 12921
[2025-11-25 04:37:06] 2025-11-25 09:36:34,147 | INFO     | did not find any defunct processes belonging to 12921
[2025-11-25 04:37:06] 2025-11-25 09:36:34,148 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:37:06] 2025-11-25 09:36:34,148 | INFO     | ready for new job
[2025-11-25 04:37:06] 2025-11-25 09:36:34,148 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:37:06] 2025-11-25 09:36:34,152 | INFO     | ***************************************
[2025-11-25 04:37:06] 2025-11-25 09:36:34,152 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:37:06] 2025-11-25 09:36:34,152 | INFO     | ***************************************
[2025-11-25 04:37:06] 2025-11-25 09:36:34,152 | INFO     | 
[2025-11-25 04:37:06] 2025-11-25 09:36:34,153 | INFO     | architecture information:
[2025-11-25 04:37:06] 2025-11-25 09:36:34,153 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:37:06] 2025-11-25 09:36:34,164 | INFO     | cat /etc/os-release:
[2025-11-25 04:37:06] NAME="CentOS Linux"
[2025-11-25 04:37:06] VERSION="7 (Core)"
[2025-11-25 04:37:06] ID="centos"
[2025-11-25 04:37:06] ID_LIKE="rhel fedora"
[2025-11-25 04:37:06] VERSION_ID="7"
[2025-11-25 04:37:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:37:06] ANSI_COLOR="0;31"
[2025-11-25 04:37:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:37:06] HOME_URL="https://www.centos.org/"
[2025-11-25 04:37:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:37:06] 
[2025-11-25 04:37:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:37:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:37:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:37:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:37:06] 
[2025-11-25 04:37:06] 2025-11-25 09:36:34,165 | INFO     | ***************************************
[2025-11-25 04:37:06] 2025-11-25 09:36:34,668 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 04:37:06] 2025-11-25 09:36:34,680 | INFO     | sufficient remaining disk space (26170359808 B)
[2025-11-25 04:37:06] 2025-11-25 09:36:34,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:37:06] 2025-11-25 09:36:34,681 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:37:06] 2025-11-25 09:36:34,681 | INFO     | update_server=False
[2025-11-25 04:37:06] 2025-11-25 09:36:34,681 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:37:06] 2025-11-25 09:36:34,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:37:06] 2025-11-25 09:36:34,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:37:06] 2025-11-25 09:36:34,892 | INFO     | all payload control threads have been joined
[2025-11-25 04:37:06] 2025-11-25 09:36:35,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:37:06] 2025-11-25 09:36:35,524 | INFO     | aborting loop
[2025-11-25 04:37:06] 2025-11-25 09:36:35,679 | INFO     | all data control threads have been joined
[2025-11-25 04:37:06] 2025-11-25 09:36:35,686 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:35,688 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:35,847 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:35,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:35,897 | INFO     | [payload] control thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:35,910 | INFO     | [job] validate thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,021 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,383 | INFO     | all job control threads have been joined
[2025-11-25 04:37:06] 2025-11-25 09:36:36,440 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,502 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,530 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:37:06] 2025-11-25 09:36:36,684 | INFO     | [data] control thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,758 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,865 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:36,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:37,388 | INFO     | [job] control thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:40,621 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:37:06] 2025-11-25 09:36:55,880 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:37:06] 2025-11-25 09:36:56,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140147391039296)>', '<ExcThread(monitor, started 140147089712896)>']
[2025-11-25 04:37:06] 2025-11-25 09:37:01,592 | INFO     | all workflow threads have been joined
[2025-11-25 04:37:06] 2025-11-25 09:37:01,592 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:37:06] 2025-11-25 09:37:01,593 | INFO     | traces error code: 0
[2025-11-25 04:37:06] 2025-11-25 09:37:01,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:37:06] 2025-11-25 09:37:05,756 | INFO     | PID=25843 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 04:37:06] 2025-11-25 09:37:05,756 | INFO     | .. there are 2 such processes running
[2025-11-25 04:37:06] 2025-11-25 09:37:05,757 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:37:06] 2025-11-25 09:37:05,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:37:06] 2025-11-25 09:37:05,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:37:06] 2025-11-25 09:37:05,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:37:06] 2025-11-25 09:37:05,757 | INFO     | [monitor] control thread has ended
[2025-11-25 04:37:06] 2025-11-25 09:37:05,841 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:37:06] 2025-11-25 09:37:05,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:37:06] 2025-11-25 09:37:05,846 [wrapper] pilotpid: 25843
[2025-11-25 04:37:06] 2025-11-25 09:37:05,849 [wrapper] Pilot exit status: 0
[2025-11-25 04:37:06] 2025-11-25 09:37:05,858 [wrapper] pandaids: 6895351744 6895351744
[2025-11-25 04:37:06] 2025-11-25 09:37:05,899 [wrapper] cleanup supervisor_pilot 10280 25844
[2025-11-25 04:37:06] 2025-11-25 09:37:05,902 [wrapper] Test setup, not cleaning
[2025-11-25 04:37:06] 2025-11-25 09:37:05,905 [wrapper] apfmon messages muted
[2025-11-25 04:37:06] 2025-11-25 09:37:05,907 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:37:06] 2025-11-25 09:37:05,910 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:37:06]  *** Error codes and diagnostics ***
[2025-11-25 04:37:06]     "exeErrorCode": 0,
[2025-11-25 04:37:06]     "exeErrorDiag": "",
[2025-11-25 04:37:06]     "pilotErrorCode": 0,
[2025-11-25 04:37:06]     "pilotErrorDiag": "",
[2025-11-25 04:37:06]  *** Listing of results directory ***
[2025-11-25 04:37:06] total 1726804
[2025-11-25 04:37:06] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 04:37:06] -rwx------ 1 boincer umatlas     36292 Nov 22 20:11 runpilot2-wrapper.sh
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 20:11 queuedata.json
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 20:11 pilot3.tar.gz
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas       100 Nov 24 03:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:37:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 03:46 run_atlas
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas       105 Nov 24 03:46 job.xml
[2025-11-25 04:37:06] -rw-r--r-- 3 boincer umatlas 408547735 Nov 24 03:46 EVNT.47483658._000562.pool.root.1
[2025-11-25 04:37:06] -rw-r--r-- 3 boincer umatlas 408547735 Nov 24 03:46 ATLAS.root_0
[2025-11-25 04:37:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:46 start_atlas.sh
[2025-11-25 04:37:06] drwxrwx--x 2 boincer umatlas      4096 Nov 24 03:46 shared
[2025-11-25 04:37:06] -rw-r--r-- 2 boincer umatlas    590094 Nov 24 03:46 input.tar.gz
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas         0 Nov 24 03:46 boinc_lockfile
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas      2786 Nov 24 08:47 pandaJob.out
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas        57 Nov 24 08:47 setup.sh.local
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas    988280 Nov 24 08:47 agis_schedconf.cvmfs.json
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 04:27 init_data.xml
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas       532 Nov 25 04:27 boinc_task_state.xml
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas 922862837 Nov 25 04:35 HITS.47556137._005574.pool.root.1
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas      1063 Nov 25 04:36 memory_monitor_summary.json
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas   1516240 Nov 25 04:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas   2321676 Nov 25 04:36 log.47556137._005574.job.log.tgz.1
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas      8648 Nov 25 04:36 heartbeat.json
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 04:36 boinc_mmap_file
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas        29 Nov 25 04:36 wrapper_checkpoint.txt
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas        96 Nov 25 04:37 pilot_heartbeat.json
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas       820 Nov 25 04:37 pilotlog.txt
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas   9865283 Nov 25 04:37 log.47556137._005574.job.log.1
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas       353 Nov 25 04:37 output.list
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas       620 Nov 25 04:37 runtime_log
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas  12206080 Nov 25 04:37 result.tar.gz
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas       793 Nov 25 04:37 xeuKDmUoDh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWVKKDmomMqDn.diag
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 04:37 runtime_log.err
[2025-11-25 04:37:06] -rw-r--r-- 1 boincer umatlas     23569 Nov 25 04:37 stderr.txt
[2025-11-25 04:37:06] HITS file was successfully produced:
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas 922862837 Nov 25 04:35 shared/HITS.pool.root.1
[2025-11-25 04:37:06]  *** Contents of shared directory: ***
[2025-11-25 04:37:06] total 1312732
[2025-11-25 04:37:06] -rw-r--r-- 3 boincer umatlas 408547735 Nov 24 03:46 ATLAS.root_0
[2025-11-25 04:37:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:46 start_atlas.sh
[2025-11-25 04:37:06] -rw-r--r-- 2 boincer umatlas    590094 Nov 24 03:46 input.tar.gz
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas 922862837 Nov 25 04:35 HITS.pool.root.1
[2025-11-25 04:37:06] -rw------- 1 boincer umatlas  12206080 Nov 25 04:37 result.tar.gz
04:37:07 (14753): run_atlas exited; CPU time 548548.001750
04:37:07 (14753): called boinc_finish(0)

</stderr_txt>
]]>

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