Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:42:13 (27136): wrapper (7.7.26015): starting
03:42:13 (27136): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 03:42:13] Arguments: --nthreads 8
[2025-11-24 03:42:13] Threads: 8
[2025-11-24 03:42:13] Checking for CVMFS
[2025-11-24 03:42:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:42:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:42:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:42:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:42:13] 2.11.2.0 14729 114561 145980 153239 3 90 16839318 18432001 1745 130560 0 82680456 99.974 4765477 29312 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 03:42:13] CVMFS is ok
[2025-11-24 03:42:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:42:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:42:13] Further information can be found at the LHC@home message board.
[2025-11-24 03:42:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:42:13] Checking for apptainer binary...
[2025-11-24 03:42:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:42:13] Running /usr/bin/apptainer --version
[2025-11-24 03:42:13] apptainer version 1.3.2-1.el7
[2025-11-24 03:42:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:42:14] c-206-30.aglt2.org
[2025-11-24 03:42:14] apptainer works
[2025-11-24 03:42:14] Set ATHENA_PROC_NUMBER=8
[2025-11-24 03:42:14] Set ATHENA_CORE_NUMBER=8
[2025-11-24 03:42:14] Starting ATLAS job with PandaID=6895358581
[2025-11-24 03:42:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:07:50]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:07:50] 2025-11-25 04:07:17,772 | INFO     | extracted standard info from prmon json
[2025-11-24 23:07:50] 2025-11-25 04:07:17,772 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:07:50] 2025-11-25 04:07:17,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:07:50] 2025-11-25 04:07:17,789 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:07:50] 2025-11-25 04:07:17,790 | INFO     | sum of square deviations: 466693988802.8867
[2025-11-24 23:07:50] 2025-11-25 04:07:17,802 | INFO     | monitor loop #4989: job 0:6895358581 is in state 'finished'
[2025-11-24 23:07:50] 2025-11-25 04:07:17,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,817 | INFO     | sum of deviations: 2217856814545.9556
[2025-11-24 23:07:50] 2025-11-25 04:07:17,817 | INFO     | mean x: 1764008695.129145
[2025-11-24 23:07:50] 2025-11-25 04:07:17,817 | INFO     | mean y: 2868526.82460733
[2025-11-24 23:07:50] 2025-11-25 04:07:17,817 | INFO     | intersect: -8380180750.167267
[2025-11-24 23:07:50] 2025-11-25 04:07:17,818 | INFO     | chi2: 5.861994257992476
[2025-11-24 23:07:50] 2025-11-25 04:07:17,819 | INFO     | sum of square deviations: 460612262113.3997
[2025-11-24 23:07:50] 2025-11-25 04:07:17,846 | INFO     | sum of deviations: 2583503982712.0415
[2025-11-24 23:07:50] 2025-11-25 04:07:17,846 | INFO     | mean x: 1764008542.6319017
[2025-11-24 23:07:50] 2025-11-25 04:07:17,846 | INFO     | mean y: 2877691.454864154
[2025-11-24 23:07:50] 2025-11-25 04:07:17,846 | INFO     | intersect: -9891177396.261404
[2025-11-24 23:07:50] 2025-11-25 04:07:17,847 | INFO     | chi2: 2.88310769182794
[2025-11-24 23:07:50] 2025-11-25 04:07:17,847 | INFO     | current chi2=2.88310769182794 (change=50.816947868944155 %)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,848 | INFO     | sum of square deviations: 454583606186.39325
[2025-11-24 23:07:50] 2025-11-25 04:07:17,874 | INFO     | sum of deviations: 2680369169222.0854
[2025-11-24 23:07:50] 2025-11-25 04:07:17,874 | INFO     | mean x: 1764008390.1346831
[2025-11-24 23:07:50] 2025-11-25 04:07:17,874 | INFO     | mean y: 2880136.6399647887
[2025-11-24 23:07:50] 2025-11-25 04:07:17,874 | INFO     | intersect: -10398273003.993498
[2025-11-24 23:07:50] 2025-11-25 04:07:17,875 | INFO     | chi2: 2.4675737034448555
[2025-11-24 23:07:50] 2025-11-25 04:07:17,876 | INFO     | current chi2=2.4675737034448555 (change=14.412711310122061 %)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,876 | INFO     | right removable region: 1135
[2025-11-24 23:07:50] 2025-11-25 04:07:17,877 | INFO     | sum of square deviations: 460611891965.66003
[2025-11-24 23:07:50] 2025-11-25 04:07:17,902 | INFO     | sum of deviations: 1911921356705.4143
[2025-11-24 23:07:50] 2025-11-25 04:07:17,902 | INFO     | mean x: 1764008847.6310253
[2025-11-24 23:07:50] 2025-11-25 04:07:17,902 | INFO     | mean y: 2876189.7397020156
[2025-11-24 23:07:50] 2025-11-25 04:07:17,902 | INFO     | intersect: -7319223495.551325
[2025-11-24 23:07:50] 2025-11-25 04:07:17,903 | INFO     | chi2: 3.7610121296334906
[2025-11-24 23:07:50] 2025-11-25 04:07:17,904 | INFO     | current chi2=3.7610121296334906 (change=35.840740128573536 %)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,905 | INFO     | sum of square deviations: 454582866378.92834
[2025-11-24 23:07:50] 2025-11-25 04:07:17,930 | INFO     | sum of deviations: 1823508677456.4387
[2025-11-24 23:07:50] 2025-11-25 04:07:17,930 | INFO     | mean x: 1764009000.1329226
[2025-11-24 23:07:50] 2025-11-25 04:07:17,930 | INFO     | mean y: 2878425.659330986
[2025-11-24 23:07:50] 2025-11-25 04:07:17,930 | INFO     | intersect: -7073247747.939775
[2025-11-24 23:07:50] 2025-11-25 04:07:17,931 | INFO     | chi2: 3.6780644255015993
[2025-11-24 23:07:50] 2025-11-25 04:07:17,931 | INFO     | current chi2=3.6780644255015993 (change=2.2054622870885177 %)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,931 | INFO     | left removable region: 20
[2025-11-24 23:07:50] 2025-11-25 04:07:17,933 | INFO     | sum of square deviations: 429836190745.0633
[2025-11-24 23:07:50] 2025-11-25 04:07:17,956 | INFO     | sum of deviations: 2156391637850.8867
[2025-11-24 23:07:50] 2025-11-25 04:07:17,957 | INFO     | mean x: 1764008969.639462
[2025-11-24 23:07:50] 2025-11-25 04:07:17,957 | INFO     | mean y: 2893371.4798206277
[2025-11-24 23:07:50] 2025-11-25 04:07:17,957 | INFO     | intersect: -8846743474.200752
[2025-11-24 23:07:50] 2025-11-25 04:07:17,958 | INFO     | chi2: 0.220872142950931
[2025-11-24 23:07:50] 2025-11-25 04:07:17,958 | INFO     | current memory leak: 5.02 B/s (using 1115 data points, chi2=0.22)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | could have reported an average CPU frequency of 2632 MHz (41 samples)
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | ..............................
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | . Timing measurements:
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | . get job = 0 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | . initial setup = 2 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | . payload setup = 5 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,959 | INFO     | . stage-in = 0 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,960 | INFO     | . payload execution = 69857 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,960 | INFO     | . stage-out = 3 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,960 | INFO     | . log creation = 0 s
[2025-11-24 23:07:50] 2025-11-25 04:07:17,960 | INFO     | ..............................
[2025-11-24 23:07:50] 2025-11-25 04:07:18,218 | INFO     | 
[2025-11-24 23:07:50] 2025-11-25 04:07:18,219 | INFO     | job summary report
[2025-11-24 23:07:50] 2025-11-25 04:07:18,219 | INFO     | --------------------------------------------------
[2025-11-24 23:07:50] 2025-11-25 04:07:18,219 | INFO     | PanDA job id: 6895358581
[2025-11-24 23:07:50] 2025-11-25 04:07:18,219 | INFO     | task id: 47556137
[2025-11-24 23:07:50] 2025-11-25 04:07:18,219 | INFO     | errors: (none)
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | pilot state: finished 
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | transexitcode: 0
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | exeerrorcode: 0
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | exeerrordiag: 
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | exitcode: 0
[2025-11-24 23:07:50] 2025-11-25 04:07:18,220 | INFO     | exitmsg: OK
[2025-11-24 23:07:50] 2025-11-25 04:07:18,221 | INFO     | cpuconsumptiontime: 540543 s
[2025-11-24 23:07:50] 2025-11-25 04:07:18,221 | INFO     | nevents: 1000
[2025-11-24 23:07:50] 2025-11-25 04:07:18,221 | INFO     | neventsw: 0
[2025-11-24 23:07:50] 2025-11-25 04:07:18,221 | INFO     | pid: 4973
[2025-11-24 23:07:50] 2025-11-25 04:07:18,221 | INFO     | pgrp: 4973
[2025-11-24 23:07:50] 2025-11-25 04:07:18,221 | INFO     | corecount: 8
[2025-11-24 23:07:50] 2025-11-25 04:07:18,222 | INFO     | event service: False
[2025-11-24 23:07:50] 2025-11-25 04:07:18,222 | INFO     | sizes: {0: 2298642, 1: 2298784, 4: 2299046, 11: 2299074, 69866: 2355443, 69871: 2365228, 69873: 2365412, 69877: 2365754}
[2025-11-24 23:07:50] 2025-11-25 04:07:18,222 | INFO     | --------------------------------------------------
[2025-11-24 23:07:50] 2025-11-25 04:07:18,222 | INFO     | 
[2025-11-24 23:07:50] 2025-11-25 04:07:18,222 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 23:07:50] 2025-11-25 04:07:18,239 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,240 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,240 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,240 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,240 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,240 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,240 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,241 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,242 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:07:50] 2025-11-25 04:07:18,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,243 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:07:50] 2025-11-25 04:07:18,243 | INFO     | job 6895358581 has completed (purged errors)
[2025-11-24 23:07:50] 2025-11-25 04:07:18,243 | INFO     | overall cleanup function is called
[2025-11-24 23:07:50] 2025-11-25 04:07:18,350 | INFO     | PID=30818 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 23:07:50] 2025-11-25 04:07:18,350 | INFO     | .. there are 3 such processes running
[2025-11-24 23:07:50] 2025-11-25 04:07:19,260 | INFO     | --- collectZombieJob: --- 10, [4973]
[2025-11-24 23:07:50] 2025-11-25 04:07:19,261 | INFO     | zombie collector waiting for pid 4973
[2025-11-24 23:07:50] 2025-11-25 04:07:19,261 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:07:50] 2025-11-25 04:07:19,261 | INFO     | collected zombie processes
[2025-11-24 23:07:50] 2025-11-25 04:07:19,261 | INFO     | will attempt to kill all subprocesses of pid=4973
[2025-11-24 23:07:50] 2025-11-25 04:07:19,401 | INFO     | process IDs to be killed: [4973] (in reverse order)
[2025-11-24 23:07:50] 2025-11-25 04:07:19,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:07:50] 2025-11-25 04:07:19,466 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:07:50] 2025-11-25 04:07:19,473 | INFO     | did not find any defunct processes belonging to 4973
[2025-11-24 23:07:50] 2025-11-25 04:07:19,478 | INFO     | did not find any defunct processes belonging to 4973
[2025-11-24 23:07:50] 2025-11-25 04:07:19,480 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:07:50] 2025-11-25 04:07:19,481 | INFO     | ready for new job
[2025-11-24 23:07:50] 2025-11-25 04:07:19,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:07:50] 2025-11-25 04:07:19,486 | INFO     | ***************************************
[2025-11-24 23:07:50] 2025-11-25 04:07:19,486 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:07:50] 2025-11-25 04:07:19,486 | INFO     | ***************************************
[2025-11-24 23:07:50] 2025-11-25 04:07:19,487 | INFO     | 
[2025-11-24 23:07:50] 2025-11-25 04:07:19,488 | INFO     | architecture information:
[2025-11-24 23:07:50] 2025-11-25 04:07:19,488 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:07:50] 2025-11-25 04:07:19,500 | INFO     | cat /etc/os-release:
[2025-11-24 23:07:50] NAME="CentOS Linux"
[2025-11-24 23:07:50] VERSION="7 (Core)"
[2025-11-24 23:07:50] ID="centos"
[2025-11-24 23:07:50] ID_LIKE="rhel fedora"
[2025-11-24 23:07:50] VERSION_ID="7"
[2025-11-24 23:07:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:07:50] ANSI_COLOR="0;31"
[2025-11-24 23:07:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:07:50] HOME_URL="https://www.centos.org/"
[2025-11-24 23:07:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:07:50] 
[2025-11-24 23:07:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:07:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:07:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:07:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:07:50] 
[2025-11-24 23:07:50] 2025-11-25 04:07:19,500 | INFO     | ***************************************
[2025-11-24 23:07:50] 2025-11-25 04:07:20,003 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 23:07:50] 2025-11-25 04:07:20,020 | INFO     | sufficient remaining disk space (24980226048 B)
[2025-11-24 23:07:50] 2025-11-25 04:07:20,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:07:50] 2025-11-25 04:07:20,020 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:07:50] 2025-11-25 04:07:20,020 | INFO     | update_server=False
[2025-11-24 23:07:50] 2025-11-25 04:07:20,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:07:50] 2025-11-25 04:07:20,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:07:50] 2025-11-25 04:07:20,021 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:07:50] 2025-11-25 04:07:20,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:07:50] 2025-11-25 04:07:20,319 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 23:07:50] 2025-11-25 04:07:20,320 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 23:07:50] 2025-11-25 04:07:20,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:07:50] 2025-11-25 04:07:20,320 | INFO     | will abort loop
[2025-11-24 23:07:50] 2025-11-25 04:07:20,968 | INFO     | all data control threads have been joined
[2025-11-24 23:07:50] 2025-11-25 04:07:21,026 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,027 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,041 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,071 | INFO     | all job control threads have been joined
[2025-11-24 23:07:50] 2025-11-25 04:07:21,124 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,150 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,150 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:07:50] 2025-11-25 04:07:21,269 | INFO     | all payload control threads have been joined
[2025-11-24 23:07:50] 2025-11-25 04:07:21,322 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,644 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,727 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,760 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,884 | INFO     | [job] validate thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,894 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:21,974 | INFO     | [data] control thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:22,027 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:22,076 | INFO     | [job] control thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:22,271 | INFO     | [payload] control thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:24,023 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:07:50] 2025-11-25 04:07:24,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041655629632)>', '<ExcThread(monitor, started 140041066100480)>']
[2025-11-24 23:07:50] 2025-11-25 04:07:29,892 | INFO     | all workflow threads have been joined
[2025-11-24 23:07:50] 2025-11-25 04:07:29,893 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:07:50] 2025-11-25 04:07:29,893 | INFO     | traces error code: 0
[2025-11-24 23:07:50] 2025-11-25 04:07:29,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:07:50] 2025-11-25 04:07:50,578 | INFO     | PID=30818 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 23:07:50] 2025-11-25 04:07:50,578 | INFO     | .. there are 3 such processes running
[2025-11-24 23:07:50] 2025-11-25 04:07:50,578 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:07:50] 2025-11-25 04:07:50,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:07:50] 2025-11-25 04:07:50,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:07:50] 2025-11-25 04:07:50,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:07:50] 2025-11-25 04:07:50,579 | INFO     | [monitor] control thread has ended
[2025-11-24 23:07:50] 2025-11-25 04:07:50,663 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:07:50] 2025-11-25 04:07:50,666 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:07:50] 2025-11-25 04:07:50,668 [wrapper] pilotpid: 30818
[2025-11-24 23:07:50] 2025-11-25 04:07:50,670 [wrapper] Pilot exit status: 0
[2025-11-24 23:07:50] 2025-11-25 04:07:50,678 [wrapper] pandaids: 6895358581
[2025-11-24 23:07:50] 2025-11-25 04:07:50,704 [wrapper] cleanup supervisor_pilot 25075 30819
[2025-11-24 23:07:50] 2025-11-25 04:07:50,707 [wrapper] Test setup, not cleaning
[2025-11-24 23:07:50] 2025-11-25 04:07:50,709 [wrapper] apfmon messages muted
[2025-11-24 23:07:50] 2025-11-25 04:07:50,712 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:07:50] 2025-11-25 04:07:50,715 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:07:50]  *** Error codes and diagnostics ***
[2025-11-24 23:07:50]     "exeErrorCode": 0,
[2025-11-24 23:07:50]     "exeErrorDiag": "",
[2025-11-24 23:07:50]     "pilotErrorCode": 0,
[2025-11-24 23:07:50]     "pilotErrorDiag": "",
[2025-11-24 23:07:50]  *** Listing of results directory ***
[2025-11-24 23:07:50] total 1320820
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 07:50 pilot3.tar.gz
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 07:53 queuedata.json
[2025-11-24 23:07:50] -rwx------ 1 boincer umatlas     36292 Nov 23 07:55 runpilot2-wrapper.sh
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas       100 Nov 24 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:07:50] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 03:42 run_atlas
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas       105 Nov 24 03:42 job.xml
[2025-11-24 23:07:50] -rw-r--r-- 2 boincer umatlas 409588042 Nov 24 03:42 EVNT.47483658._000735.pool.root.1
[2025-11-24 23:07:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:42 start_atlas.sh
[2025-11-24 23:07:50] drwxrwx--x 2 boincer umatlas      4096 Nov 24 03:42 shared
[2025-11-24 23:07:50] -rw-r--r-- 2 boincer umatlas    590098 Nov 24 03:42 input.tar.gz
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas         0 Nov 24 03:42 boinc_lockfile
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 03:42 pandaJob.out
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas        57 Nov 24 03:42 setup.sh.local
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas    989794 Nov 24 03:42 agis_schedconf.cvmfs.json
[2025-11-24 23:07:50] drwx------ 5 boincer umatlas      4096 Nov 24 03:42 pilot3
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas       533 Nov 24 22:58 boinc_task_state.xml
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 23:00 init_data.xml
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas 915084834 Nov 24 23:06 HITS.47556137._007304.pool.root.1
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas      1066 Nov 24 23:07 memory_monitor_summary.json
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas   1516227 Nov 24 23:07 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas   2306310 Nov 24 23:07 log.47556137._007304.job.log.tgz.1
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas      8676 Nov 24 23:07 heartbeat.json
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas        95 Nov 24 23:07 pilot_heartbeat.json
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 23:07 boinc_mmap_file
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas       820 Nov 24 23:07 pilotlog.txt
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas        29 Nov 24 23:07 wrapper_checkpoint.txt
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas   9659129 Nov 24 23:07 log.47556137._007304.job.log.1
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas       353 Nov 24 23:07 output.list
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas       620 Nov 24 23:07 runtime_log
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas  11980800 Nov 24 23:07 result.tar.gz
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas       668 Nov 24 23:07 zj0NDmnnOh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEuKKDmJcoLEm.diag
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas      9343 Nov 24 23:07 runtime_log.err
[2025-11-24 23:07:50] -rw-r--r-- 1 boincer umatlas     21339 Nov 24 23:07 stderr.txt
[2025-11-24 23:07:50] HITS file was successfully produced:
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas 915084834 Nov 24 23:06 shared/HITS.pool.root.1
[2025-11-24 23:07:50]  *** Contents of shared directory: ***
[2025-11-24 23:07:50] total 1305936
[2025-11-24 23:07:50] -rw-r--r-- 2 boincer umatlas 409588042 Nov 24 03:42 ATLAS.root_0
[2025-11-24 23:07:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 03:42 start_atlas.sh
[2025-11-24 23:07:50] -rw-r--r-- 2 boincer umatlas    590098 Nov 24 03:42 input.tar.gz
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas 915084834 Nov 24 23:06 HITS.pool.root.1
[2025-11-24 23:07:50] -rw------- 1 boincer umatlas  11980800 Nov 24 23:07 result.tar.gz
23:07:52 (27136): run_atlas exited; CPU time 539434.389063
23:07:52 (27136): called boinc_finish(0)

</stderr_txt>
]]>

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