Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:20 (20804): wrapper (7.7.26015): starting
00:39:20 (20804): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:39:20] Arguments: --nthreads 8
[2025-11-27 00:39:20] Threads: 8
[2025-11-27 00:39:20] Checking for CVMFS
[2025-11-27 00:39:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:39:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:39:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:39:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:39:22] 2.11.2.0 19422 286021 140344 153340 1 85 24683514 25165824 1338 130560 12 138738413 99.872 84606182 2880 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:39:22] CVMFS is ok
[2025-11-27 00:39:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:39:22] Checking for apptainer binary...
[2025-11-27 00:39:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:39:22] Running /usr/bin/apptainer --version
[2025-11-27 00:39:23] apptainer version 1.3.2-1.el7
[2025-11-27 00:39:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:39:28] cg-vwn320.simple-grid.lan
[2025-11-27 00:39:28] apptainer works
[2025-11-27 00:39:28] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:39:28] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:39:28] Starting ATLAS job with PandaID=6895358576
[2025-11-27 00:39:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:16:32]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:16:33] 2025-11-27 23:15:21,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:33] 2025-11-27 23:15:23,435 | INFO     | time since job start (84748s) is within the limit (172800.0s)
[2025-11-28 00:16:33] 2025-11-27 23:15:24,032 | INFO     | monitor loop #5713: job 0:6895358576 is in state 'finished'
[2025-11-28 00:16:33] 2025-11-27 23:15:24,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:33] 2025-11-27 23:15:25,442 | INFO     | time since job start (84750s) is within the limit (172800.0s)
[2025-11-28 00:16:33] 2025-11-27 23:15:26,540 | INFO     | monitor loop #5714: job 0:6895358576 is in state 'finished'
[2025-11-28 00:16:33] 2025-11-27 23:15:26,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:33] 2025-11-27 23:15:26,671 | INFO     | PID=24595 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:16:33] 2025-11-27 23:15:26,672 | INFO     | .. there are 9 such processes running
[2025-11-28 00:16:33] 2025-11-27 23:15:27,673 | INFO     | time since job start (84752s) is within the limit (172800.0s)
[2025-11-28 00:16:33] 2025-11-27 23:15:29,044 | INFO     | monitor loop #5715: job 0:6895358576 is in state 'finished'
[2025-11-28 00:16:33] 2025-11-27 23:15:29,044 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:33] 2025-11-27 23:15:29,686 | INFO     | time since job start (84754s) is within the limit (172800.0s)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,339 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:16:33] 2025-11-27 23:15:31,340 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:16:33] 2025-11-27 23:15:31,342 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895358576/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,343 | INFO     | extracted standard info from prmon json
[2025-11-28 00:16:33] 2025-11-27 23:15:31,343 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:16:33] 2025-11-27 23:15:31,343 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:16:33] 2025-11-27 23:15:31,368 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:16:33] 2025-11-27 23:15:31,370 | INFO     | sum of square deviations: 813150684585.8925
[2025-11-28 00:16:33] 2025-11-27 23:15:31,429 | INFO     | sum of deviations: 3879209360821.174
[2025-11-28 00:16:33] 2025-11-27 23:15:31,430 | INFO     | mean x: 1764243155.0717912
[2025-11-28 00:16:33] 2025-11-27 23:15:31,430 | INFO     | mean y: 2846230.089195069
[2025-11-28 00:16:33] 2025-11-27 23:15:31,430 | INFO     | intersect: -8413636337.842852
[2025-11-28 00:16:33] 2025-11-27 23:15:31,432 | INFO     | chi2: 21.04966722287519
[2025-11-28 00:16:33] 2025-11-27 23:15:31,433 | INFO     | sum of square deviations: 804338160827.6277
[2025-11-28 00:16:33] 2025-11-27 23:15:31,487 | INFO     | sum of deviations: 4350081242096.298
[2025-11-28 00:16:33] 2025-11-27 23:15:31,487 | INFO     | mean x: 1764243002.5756915
[2025-11-28 00:16:33] 2025-11-27 23:15:31,487 | INFO     | mean y: 2854377.9250363903
[2025-11-28 00:16:33] 2025-11-27 23:15:31,487 | INFO     | intersect: -9538655357.367579
[2025-11-28 00:16:33] 2025-11-27 23:15:31,489 | INFO     | chi2: 17.725677864995664
[2025-11-28 00:16:33] 2025-11-27 23:15:31,489 | INFO     | current chi2=17.725677864995664 (change=15.791172956251135 %)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,489 | INFO     | right removable region: 1373
[2025-11-28 00:16:33] 2025-11-27 23:15:31,491 | INFO     | sum of square deviations: 804337259247.6289
[2025-11-28 00:16:33] 2025-11-27 23:15:31,542 | INFO     | sum of deviations: 3306395202552.7246
[2025-11-28 00:16:33] 2025-11-27 23:15:31,542 | INFO     | mean x: 1764243307.5756915
[2025-11-28 00:16:33] 2025-11-27 23:15:31,542 | INFO     | mean y: 2856141.069868996
[2025-11-28 00:16:33] 2025-11-27 23:15:31,542 | INFO     | intersect: -7249432051.771563
[2025-11-28 00:16:33] 2025-11-27 23:15:31,544 | INFO     | chi2: 16.387803456639766
[2025-11-28 00:16:33] 2025-11-27 23:15:31,544 | INFO     | current chi2=16.387803456639766 (change=22.146971336293916 %)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,544 | INFO     | left removable region: 10
[2025-11-28 00:16:33] 2025-11-27 23:15:31,546 | INFO     | sum of square deviations: 785173434727.2975
[2025-11-28 00:16:33] 2025-11-27 23:15:31,567 | INFO     | monitor loop #5716: job 0:6895358576 is in state 'finished'
[2025-11-28 00:16:33] 2025-11-27 23:15:31,567 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,605 | INFO     | sum of deviations: 3393713479529.4624
[2025-11-28 00:16:33] 2025-11-27 23:15:31,605 | INFO     | mean x: 1764243277.0843728
[2025-11-28 00:16:33] 2025-11-27 23:15:31,605 | INFO     | mean y: 2874908.2046955246
[2025-11-28 00:16:33] 2025-11-27 23:15:31,605 | INFO     | intersect: -7622620206.37462
[2025-11-28 00:16:33] 2025-11-27 23:15:31,607 | INFO     | chi2: 8.819312287621093
[2025-11-28 00:16:33] 2025-11-27 23:15:31,607 | INFO     | current memory leak: 4.32 B/s (using 1363 data points, chi2=8.82)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,608 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,608 | INFO     | ..............................
[2025-11-28 00:16:33] 2025-11-27 23:15:31,608 | INFO     | . Timing measurements:
[2025-11-28 00:16:33] 2025-11-27 23:15:31,608 | INFO     | . get job = 0 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | . initial setup = 7 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | . payload setup = 174 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | . stage-in = 0 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | . payload execution = 84267 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | . stage-out = 6 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | . log creation = 1 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,609 | INFO     | ..............................
[2025-11-28 00:16:33] 2025-11-27 23:15:31,704 | INFO     | time since job start (84756s) is within the limit (172800.0s)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,805 | INFO     | 
[2025-11-28 00:16:33] 2025-11-27 23:15:31,805 | INFO     | job summary report
[2025-11-28 00:16:33] 2025-11-27 23:15:31,805 | INFO     | --------------------------------------------------
[2025-11-28 00:16:33] 2025-11-27 23:15:31,805 | INFO     | PanDA job id: 6895358576
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | task id: 47556137
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | errors: (none)
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | pilot state: finished 
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | transexitcode: 0
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | exeerrorcode: 0
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | exeerrordiag: 
[2025-11-28 00:16:33] 2025-11-27 23:15:31,806 | INFO     | exitcode: 0
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | exitmsg: OK
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | cpuconsumptiontime: 318444 s
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | nevents: 1000
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | neventsw: 0
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | pid: 31392
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | pgrp: 31392
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | corecount: 8
[2025-11-28 00:16:33] 2025-11-27 23:15:31,807 | INFO     | event service: False
[2025-11-28 00:16:33] 2025-11-27 23:15:31,808 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 34: 2284348, 45: 2284376, 55: 2284532, 66: 2284560, 77: 2284588, 88: 2284644, 94: 2284934, 98: 2285242, 8
[2025-11-28 00:16:33] 2025-11-27 23:15:31,808 | INFO     | --------------------------------------------------
[2025-11-28 00:16:33] 2025-11-27 23:15:31,808 | INFO     | 
[2025-11-28 00:16:33] 2025-11-27 23:15:31,808 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 00:16:33] 2025-11-27 23:15:32,024 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,025 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,026 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:16:33] 2025-11-27 23:15:32,027 | INFO     | job 6895358576 has completed (purged errors)
[2025-11-28 00:16:33] 2025-11-27 23:15:32,027 | INFO     | overall cleanup function is called
[2025-11-28 00:16:33] 2025-11-27 23:15:33,043 | INFO     | --- collectZombieJob: --- 10, [31392]
[2025-11-28 00:16:33] 2025-11-27 23:15:33,043 | INFO     | zombie collector waiting for pid 31392
[2025-11-28 00:16:33] 2025-11-27 23:15:33,043 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:16:33] 2025-11-27 23:15:33,043 | INFO     | collected zombie processes
[2025-11-28 00:16:33] 2025-11-27 23:15:33,043 | INFO     | will attempt to kill all subprocesses of pid=31392
[2025-11-28 00:16:33] 2025-11-27 23:15:33,148 | INFO     | process IDs to be killed: [31392] (in reverse order)
[2025-11-28 00:16:33] 2025-11-27 23:15:33,964 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:16:33] 2025-11-27 23:15:33,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:16:33] 2025-11-27 23:15:33,968 | INFO     | did not find any defunct processes belonging to 31392
[2025-11-28 00:16:33] 2025-11-27 23:15:33,970 | INFO     | did not find any defunct processes belonging to 31392
[2025-11-28 00:16:33] 2025-11-27 23:15:34,014 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:16:33] 2025-11-27 23:15:34,014 | INFO     | ready for new job
[2025-11-28 00:16:33] 2025-11-27 23:15:34,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:16:33] 2025-11-27 23:15:34,020 | INFO     | ***************************************
[2025-11-28 00:16:33] 2025-11-27 23:15:34,020 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:16:33] 2025-11-27 23:15:34,020 | INFO     | ***************************************
[2025-11-28 00:16:33] 2025-11-27 23:15:34,020 | INFO     | 
[2025-11-28 00:16:33] 2025-11-27 23:15:34,021 | INFO     | pilot is running in a VM
[2025-11-28 00:16:33] 2025-11-27 23:15:34,021 | INFO     | architecture information:
[2025-11-28 00:16:33] 2025-11-27 23:15:34,027 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:16:33] 2025-11-27 23:15:34,193 | INFO     | cat /etc/os-release:
[2025-11-28 00:16:33] NAME="CentOS Linux"
[2025-11-28 00:16:33] VERSION="7 (Core)"
[2025-11-28 00:16:33] ID="centos"
[2025-11-28 00:16:33] ID_LIKE="rhel fedora"
[2025-11-28 00:16:33] VERSION_ID="7"
[2025-11-28 00:16:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:16:33] ANSI_COLOR="0;31"
[2025-11-28 00:16:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:16:33] HOME_URL="https://www.centos.org/"
[2025-11-28 00:16:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:16:33] 
[2025-11-28 00:16:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:16:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:16:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:16:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:16:33] 
[2025-11-28 00:16:33] 2025-11-27 23:15:34,194 | INFO     | ***************************************
[2025-11-28 00:16:33] 2025-11-27 23:15:34,697 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 00:16:33] 2025-11-27 23:15:34,835 | INFO     | sufficient remaining disk space (494982397952 B)
[2025-11-28 00:16:33] 2025-11-27 23:15:34,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:16:33] 2025-11-27 23:15:34,835 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:16:33] 2025-11-27 23:15:34,835 | INFO     | update_server=False
[2025-11-28 00:16:33] 2025-11-27 23:15:34,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:16:33] 2025-11-27 23:15:35,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:16:33] 2025-11-27 23:15:35,081 | INFO     | aborting loop
[2025-11-28 00:16:33] 2025-11-27 23:15:35,284 | INFO     | all payload control threads have been joined
[2025-11-28 00:16:33] 2025-11-27 23:15:35,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:16:33] 2025-11-27 23:15:35,510 | INFO     | all data control threads have been joined
[2025-11-28 00:16:33] 2025-11-27 23:15:35,723 | INFO     | all job control threads have been joined
[2025-11-28 00:16:33] 2025-11-27 23:15:35,841 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:35,891 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,045 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,087 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,289 | INFO     | [payload] control thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,516 | INFO     | [data] control thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,538 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,604 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,659 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,729 | INFO     | [job] control thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:36,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:16:33] 2025-11-27 23:15:36,931 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:37,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:37,185 | INFO     | [job] validate thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:37,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:16:33] 2025-11-27 23:15:37,469 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:37,746 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:15:41,406 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:16:33] 2025-11-27 23:16:04,902 | INFO     | PID=24595 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:16:33] 2025-11-27 23:16:04,903 | INFO     | .. there are 9 such processes running
[2025-11-28 00:16:33] 2025-11-27 23:16:04,903 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:16:33] 2025-11-27 23:16:04,903 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:16:33] 2025-11-27 23:16:04,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:16:33] 2025-11-27 23:16:23,216 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:16:33] 2025-11-27 23:16:23,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135436064576)>', '<ExcThread(monitor, started 140135135942400)>']
[2025-11-28 00:16:33] 2025-11-27 23:16:24,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:16:33] 2025-11-27 23:16:24,016 | INFO     | [monitor] control thread has ended
[2025-11-28 00:16:33] 2025-11-27 23:16:28,562 | INFO     | all workflow threads have been joined
[2025-11-28 00:16:33] 2025-11-27 23:16:28,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:16:33] 2025-11-27 23:16:28,562 | INFO     | traces error code: 0
[2025-11-28 00:16:33] 2025-11-27 23:16:28,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:16:33] 2025-11-27 23:16:28,897 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:16:33] 2025-11-27 23:16:29,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:16:33] 2025-11-27 23:16:29,250 [wrapper] pilotpid: 24595
[2025-11-28 00:16:33] 2025-11-27 23:16:29,316 [wrapper] Pilot exit status: 0
[2025-11-28 00:16:33] 2025-11-27 23:16:29,767 [wrapper] pandaids: 6895358576
[2025-11-28 00:16:33] 2025-11-27 23:16:30,479 [wrapper] cleanup supervisor_pilot  4429 24597
[2025-11-28 00:16:33] 2025-11-27 23:16:30,530 [wrapper] Test setup, not cleaning
[2025-11-28 00:16:33] 2025-11-27 23:16:30,555 [wrapper] apfmon messages muted
[2025-11-28 00:16:33] 2025-11-27 23:16:30,647 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:16:33] 2025-11-27 23:16:30,728 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:16:33]  *** Error codes and diagnostics ***
[2025-11-28 00:16:33]     "exeErrorCode": 0,
[2025-11-28 00:16:33]     "exeErrorDiag": "",
[2025-11-28 00:16:33]     "pilotErrorCode": 0,
[2025-11-28 00:16:33]     "pilotErrorDiag": "",
[2025-11-28 00:16:33]  *** Listing of results directory ***
[2025-11-28 00:16:33] total 1339772
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc      5112 Nov 23 13:50 queuedata.json
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc    576529 Nov 23 13:50 pilot3.tar.gz
[2025-11-28 00:16:33] -rwx------. 1 boinc boinc     36292 Nov 23 13:52 runpilot2-wrapper.sh
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:16:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:39 run_atlas
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:39 job.xml
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc      6391 Nov 27 00:39 init_data.xml
[2025-11-28 00:16:33] -rw-r--r--. 2 boinc boinc 409615635 Nov 27 00:39 EVNT.47483658._000734.pool.root.1
[2025-11-28 00:16:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:39 start_atlas.sh
[2025-11-28 00:16:33] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:39 shared
[2025-11-28 00:16:33] -rw-r--r--. 2 boinc boinc    590097 Nov 27 00:39 input.tar.gz
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:39 boinc_lockfile
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc      2785 Nov 27 00:39 pandaJob.out
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc    991538 Nov 27 00:42 agis_schedconf.cvmfs.json
[2025-11-28 00:16:33] drwx------. 5 boinc boinc      4096 Nov 27 00:42 pilot3
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:56 boinc_task_state.xml
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc 930894078 Nov 28 00:12 HITS.47556137._007299.pool.root.1
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc      1028 Nov 28 00:13 memory_monitor_summary.json
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc   1516240 Nov 28 00:13 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc   2468908 Nov 28 00:13 log.47556137._007299.job.log.tgz.1
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc        95 Nov 28 00:15 pilot_heartbeat.json
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc      8627 Nov 28 00:15 heartbeat.json
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc      4884 Nov 28 00:16 pilotlog.txt
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:16 boinc_mmap_file
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:16 wrapper_checkpoint.txt
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc  11285332 Nov 28 00:16 log.47556137._007299.job.log.1
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc       353 Nov 28 00:16 output.list
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:16 runtime_log
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc  13772800 Nov 28 00:16 result.tar.gz
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:16 runtime_log.err
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc       662 Nov 28 00:16 feLKDmzkOh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9tKKDmx5yi1m.diag
[2025-11-28 00:16:33] -rw-r--r--. 1 boinc boinc     21462 Nov 28 00:16 stderr.txt
[2025-11-28 00:16:33] HITS file was successfully produced:
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc 930894078 Nov 28 00:12 shared/HITS.pool.root.1
[2025-11-28 00:16:33]  *** Contents of shared directory: ***
[2025-11-28 00:16:33] total 1323144
[2025-11-28 00:16:33] -rw-r--r--. 2 boinc boinc 409615635 Nov 27 00:39 ATLAS.root_0
[2025-11-28 00:16:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:39 start_atlas.sh
[2025-11-28 00:16:33] -rw-r--r--. 2 boinc boinc    590097 Nov 27 00:39 input.tar.gz
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc 930894078 Nov 28 00:12 HITS.pool.root.1
[2025-11-28 00:16:33] -rw-------. 1 boinc boinc  13772800 Nov 28 00:16 result.tar.gz
00:16:34 (20804): run_atlas exited; CPU time 319038.680207
00:16:34 (20804): called boinc_finish(0)

</stderr_txt>
]]>

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