Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:22:14 (1365727): wrapper (7.7.26015): starting
23:22:14 (1365727): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 23:22:14] Arguments: --nthreads 3
[2025-11-26 23:22:14] Threads: 3
[2025-11-26 23:22:14] Checking for CVMFS
[2025-11-26 23:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:22:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:22:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:22:14] 2.9.2.0 3973621 11907 93428 153337 2 81 35402957 36864000 0 130560 0 4419807 99.872 694031 5343 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 23:22:14] CVMFS is ok
[2025-11-26 23:22:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:22:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:22:14] Further information can be found at the LHC@home message board.
[2025-11-26 23:22:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:22:14] Checking for apptainer binary...
[2025-11-26 23:22:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:22:14] Running /usr/bin/apptainer --version
[2025-11-26 23:22:14] apptainer version 1.4.1-1.1
[2025-11-26 23:22:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:22:14] magicA246
[2025-11-26 23:22:14] apptainer works
[2025-11-26 23:22:14] Set ATHENA_PROC_NUMBER=3
[2025-11-26 23:22:14] Set ATHENA_CORE_NUMBER=3
[2025-11-26 23:22:14] Starting ATLAS job with PandaID=6895358060
[2025-11-26 23:22:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:20:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:20:59] 2025-11-27 06:20:17,181 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,181 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,181 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,181 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | job 6895358060 has completed (purged errors)
[2025-11-27 07:20:59] 2025-11-27 06:20:17,182 | INFO     | overall cleanup function is called
[2025-11-27 07:20:59] 2025-11-27 06:20:18,191 | INFO     | --- collectZombieJob: --- 10, [1375906]
[2025-11-27 07:20:59] 2025-11-27 06:20:18,191 | INFO     | zombie collector waiting for pid 1375906
[2025-11-27 07:20:59] 2025-11-27 06:20:18,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:20:59] 2025-11-27 06:20:18,191 | INFO     | collected zombie processes
[2025-11-27 07:20:59] 2025-11-27 06:20:18,191 | INFO     | will attempt to kill all subprocesses of pid=1375906
[2025-11-27 07:20:59] 2025-11-27 06:20:18,234 | INFO     | process IDs to be killed: [1375906] (in reverse order)
[2025-11-27 07:20:59] 2025-11-27 06:20:18,260 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:20:59] 2025-11-27 06:20:18,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:20:59] 2025-11-27 06:20:18,261 | INFO     | did not find any defunct processes belonging to 1375906
[2025-11-27 07:20:59] 2025-11-27 06:20:18,262 | INFO     | did not find any defunct processes belonging to 1375906
[2025-11-27 07:20:59] 2025-11-27 06:20:18,263 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:20:59] 2025-11-27 06:20:18,263 | INFO     | ready for new job
[2025-11-27 07:20:59] 2025-11-27 06:20:18,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:20:59] 2025-11-27 06:20:18,264 | INFO     | ***************************************
[2025-11-27 07:20:59] 2025-11-27 06:20:18,264 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:20:59] 2025-11-27 06:20:18,264 | INFO     | ***************************************
[2025-11-27 07:20:59] 2025-11-27 06:20:18,265 | INFO     | 
[2025-11-27 07:20:59] 2025-11-27 06:20:18,265 | INFO     | architecture information:
[2025-11-27 07:20:59] 2025-11-27 06:20:18,265 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:20:59] 2025-11-27 06:20:18,275 | INFO     | cat /etc/os-release:
[2025-11-27 07:20:59] NAME="CentOS Linux"
[2025-11-27 07:20:59] VERSION="7 (Core)"
[2025-11-27 07:20:59] ID="centos"
[2025-11-27 07:20:59] ID_LIKE="rhel fedora"
[2025-11-27 07:20:59] VERSION_ID="7"
[2025-11-27 07:20:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:20:59] ANSI_COLOR="0;31"
[2025-11-27 07:20:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:20:59] HOME_URL="https://www.centos.org/"
[2025-11-27 07:20:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:20:59] 
[2025-11-27 07:20:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:20:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:20:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:20:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:20:59] 
[2025-11-27 07:20:59] 2025-11-27 06:20:18,275 | INFO     | ***************************************
[2025-11-27 07:20:59] 2025-11-27 06:20:18,779 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 07:20:59] 2025-11-27 06:20:18,792 | INFO     | sufficient remaining disk space (366525546496 B)
[2025-11-27 07:20:59] 2025-11-27 06:20:18,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:20:59] 2025-11-27 06:20:18,792 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:20:59] 2025-11-27 06:20:18,792 | INFO     | update_server=False
[2025-11-27 07:20:59] 2025-11-27 06:20:18,792 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:20:59] 2025-11-27 06:20:18,793 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:20:59] 2025-11-27 06:20:19,043 | INFO     | all payload control threads have been joined
[2025-11-27 07:20:59] 2025-11-27 06:20:19,245 | INFO     | all data control threads have been joined
[2025-11-27 07:20:59] 2025-11-27 06:20:19,530 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:20:59] 2025-11-27 06:20:19,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:20:59] 2025-11-27 06:20:19,745 | INFO     | aborting loop
[2025-11-27 07:20:59] 2025-11-27 06:20:19,798 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:19,799 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:20,027 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:20:59] 2025-11-27 06:20:20,049 | INFO     | [payload] control thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:20,160 | INFO     | all job control threads have been joined
[2025-11-27 07:20:59] 2025-11-27 06:20:20,218 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:20,248 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:20,250 | INFO     | [data] control thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:20,746 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:20,881 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:21,033 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:21,034 | INFO     | [job] validate thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:21,034 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:21,045 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:21,166 | INFO     | [job] control thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:22,033 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:23,537 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:29,305 | INFO     | job.realtimelogging is not enabled
[2025-11-27 07:20:59] 2025-11-27 06:20:30,311 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:20:59] 2025-11-27 06:20:48,839 | INFO     | PID=1369447 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:20:59] 2025-11-27 06:20:48,839 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:20:59] 2025-11-27 06:20:48,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:20:59] 2025-11-27 06:20:48,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:20:59] 2025-11-27 06:20:52,752 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:20:59] 2025-11-27 06:20:54,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999980803904)>', '<ExcThread(monitor, started 139999315994368)>']
[2025-11-27 07:20:59] 2025-11-27 06:20:54,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:20:59] 2025-11-27 06:20:54,872 | INFO     | [monitor] control thread has ended
[2025-11-27 07:20:59] 2025-11-27 06:20:59,102 | INFO     | all workflow threads have been joined
[2025-11-27 07:20:59] 2025-11-27 06:20:59,102 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:20:59] 2025-11-27 06:20:59,103 | INFO     | traces error code: 0
[2025-11-27 07:20:59] 2025-11-27 06:20:59,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:20:59] 2025-11-27 06:20:59,156 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:20:59] 2025-11-27 06:20:59,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:20:59] 2025-11-27 06:20:59,161 [wrapper] pilotpid: 1369447
[2025-11-27 07:20:59] 2025-11-27 06:20:59,164 [wrapper] Pilot exit status: 0
[2025-11-27 07:20:59] 2025-11-27 06:20:59,172 [wrapper] pandaids: 6895358060
[2025-11-27 07:20:59] 2025-11-27 06:20:59,190 [wrapper] cleanup supervisor_pilot 1426617 1369448
[2025-11-27 07:20:59] 2025-11-27 06:20:59,192 [wrapper] Test setup, not cleaning
[2025-11-27 07:20:59] 2025-11-27 06:20:59,195 [wrapper] apfmon messages muted
[2025-11-27 07:20:59] 2025-11-27 06:20:59,197 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:20:59] 2025-11-27 06:20:59,200 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:20:59]  *** Error codes and diagnostics ***
[2025-11-27 07:20:59]     "exeErrorCode": 0,
[2025-11-27 07:20:59]     "exeErrorDiag": "",
[2025-11-27 07:20:59]     "pilotErrorCode": 0,
[2025-11-27 07:20:59]     "pilotErrorDiag": "",
[2025-11-27 07:20:59]  *** Listing of results directory ***
[2025-11-27 07:20:59] total 1309216
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc    576529 Nov 23 13:14 pilot3.tar.gz
[2025-11-27 07:20:59] -rwx------ 1 boinc boinc     36292 Nov 23 13:16 runpilot2-wrapper.sh
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc      5112 Nov 23 13:16 queuedata.json
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc       100 Nov 26 23:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:20:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 23:22 run_atlas
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc       105 Nov 26 23:22 job.xml
[2025-11-27 07:20:59] -rw-r--r-- 2 boinc boinc 408821536 Nov 26 23:22 EVNT.47483658._000727.pool.root.1
[2025-11-27 07:20:59] drwxrwx--x 2 boinc boinc      4096 Nov 26 23:22 shared
[2025-11-27 07:20:59] -rw-r--r-- 2 boinc boinc    590099 Nov 26 23:22 input.tar.gz
[2025-11-27 07:20:59] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:22 start_atlas.sh
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:22 boinc_setup_complete
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc      6449 Nov 26 23:22 init_data.xml
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:22 boinc_lockfile
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc      2785 Nov 26 23:22 pandaJob.out
[2025-11-27 07:20:59] -rw------- 1 boinc boinc    991546 Nov 26 23:22 agis_schedconf.cvmfs.json
[2025-11-27 07:20:59] drwx------ 5 boinc boinc      4096 Nov 26 23:22 pilot3
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc       532 Nov 27 07:16 boinc_task_state.xml
[2025-11-27 07:20:59] -rw------- 1 boinc boinc 917482121 Nov 27 07:19 HITS.47556137._007226.pool.root.1
[2025-11-27 07:20:59] -rw------- 1 boinc boinc      1021 Nov 27 07:20 memory_monitor_summary.json
[2025-11-27 07:20:59] -rw------- 1 boinc boinc   1516240 Nov 27 07:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:20:59] -rw------- 1 boinc boinc   1175078 Nov 27 07:20 log.47556137._007226.job.log.tgz.1
[2025-11-27 07:20:59] -rw------- 1 boinc boinc      8559 Nov 27 07:20 heartbeat.json
[2025-11-27 07:20:59] -rw------- 1 boinc boinc        95 Nov 27 07:20 pilot_heartbeat.json
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc      8192 Nov 27 07:20 boinc_mmap_file
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc        28 Nov 27 07:20 wrapper_checkpoint.txt
[2025-11-27 07:20:59] -rw------- 1 boinc boinc      4824 Nov 27 07:20 pilotlog.txt
[2025-11-27 07:20:59] -rw------- 1 boinc boinc   4037641 Nov 27 07:20 log.47556137._007226.job.log.1
[2025-11-27 07:20:59] -rw------- 1 boinc boinc       353 Nov 27 07:20 output.list
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc       620 Nov 27 07:20 runtime_log
[2025-11-27 07:20:59] -rw------- 1 boinc boinc   5232640 Nov 27 07:20 result.tar.gz
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc      8913 Nov 27 07:20 runtime_log.err
[2025-11-27 07:20:59] -rw------- 1 boinc boinc       668 Nov 27 07:20 4ytMDmwBOh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmysKKDmLW7bFm.diag
[2025-11-27 07:20:59] -rw-r--r-- 1 boinc boinc     12462 Nov 27 07:20 stderr.txt
[2025-11-27 07:20:59] HITS file was successfully produced:
[2025-11-27 07:20:59] -rw------- 1 boinc boinc 917482121 Nov 27 07:19 shared/HITS.pool.root.1
[2025-11-27 07:20:59]  *** Contents of shared directory: ***
[2025-11-27 07:20:59] total 1300936
[2025-11-27 07:20:59] -rw-r--r-- 2 boinc boinc 408821536 Nov 26 23:22 ATLAS.root_0
[2025-11-27 07:20:59] -rw-r--r-- 2 boinc boinc    590099 Nov 26 23:22 input.tar.gz
[2025-11-27 07:20:59] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:22 start_atlas.sh
[2025-11-27 07:20:59] -rw------- 1 boinc boinc 917482121 Nov 27 07:19 HITS.pool.root.1
[2025-11-27 07:20:59] -rw------- 1 boinc boinc   5232640 Nov 27 07:20 result.tar.gz
07:21:00 (1365727): run_atlas exited; CPU time 84577.055054
07:21:00 (1365727): called boinc_finish(0)

</stderr_txt>
]]>

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