Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:16:13 (16328): wrapper (7.7.26015): starting
02:16:13 (16328): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 02:16:13] Arguments: --nthreads 12
[2025-11-24 02:16:13] Threads: 12
[2025-11-24 02:16:13] Checking for CVMFS
[2025-11-24 02:16:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:16:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:16:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:16:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:16:13] 2.11.2.0 2925 284490 94404 153236 0 81 15188276 20275201 1 130560 1 127100103 99.975 15663005 13631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 02:16:13] CVMFS is ok
[2025-11-24 02:16:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:16:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:16:13] Further information can be found at the LHC@home message board.
[2025-11-24 02:16:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:16:13] Checking for apptainer binary...
[2025-11-24 02:16:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:16:13] Running /usr/bin/apptainer --version
[2025-11-24 02:16:13] apptainer version 1.3.2-1.el7
[2025-11-24 02:16:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:16:15] c-205-10.aglt2.org
[2025-11-24 02:16:15] apptainer works
[2025-11-24 02:16:15] Set ATHENA_PROC_NUMBER=12
[2025-11-24 02:16:15] Set ATHENA_CORE_NUMBER=12
[2025-11-24 02:16:15] Starting ATLAS job with PandaID=6895358156
[2025-11-24 02:16:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 11:33:42]  *** The last 200 lines of the pilot log: ***
[2025-11-24 11:33:42] 2025-11-24 16:33:09,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,315 | INFO     | time since job start (33399s) is within the limit (172800.0s)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,493 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 11:33:42] 2025-11-24 16:33:09,497 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-24 11:33:42] 2025-11-24 16:33:09,500 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895358156/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,500 | INFO     | extracted standard info from prmon json
[2025-11-24 11:33:42] 2025-11-24 16:33:09,500 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 11:33:42] 2025-11-24 16:33:09,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 11:33:42] 2025-11-24 16:33:09,510 | INFO     | fitting pss+swap vs Time
[2025-11-24 11:33:42] 2025-11-24 16:33:09,511 | INFO     | sum of square deviations: 50750326449.42909
[2025-11-24 11:33:42] 2025-11-24 16:33:09,517 | INFO     | sum of deviations: 695682129111.2814
[2025-11-24 11:33:42] 2025-11-24 16:33:09,517 | INFO     | mean x: 1763985272.0914078
[2025-11-24 11:33:42] 2025-11-24 16:33:09,517 | INFO     | mean y: 3426426.634369287
[2025-11-24 11:33:42] 2025-11-24 16:33:09,517 | INFO     | intersect: -24177167387.52224
[2025-11-24 11:33:42] 2025-11-24 16:33:09,518 | INFO     | chi2: 5.9522988777016135
[2025-11-24 11:33:42] 2025-11-24 16:33:09,519 | INFO     | sum of square deviations: 49371329796.88765
[2025-11-24 11:33:42] 2025-11-24 16:33:09,525 | INFO     | sum of deviations: 889361062949.1295
[2025-11-24 11:33:42] 2025-11-24 16:33:09,525 | INFO     | mean x: 1763985119.5922508
[2025-11-24 11:33:42] 2025-11-24 16:33:09,525 | INFO     | mean y: 3447827.697416974
[2025-11-24 11:33:42] 2025-11-24 16:33:09,525 | INFO     | intersect: -31772477338.610523
[2025-11-24 11:33:42] 2025-11-24 16:33:09,526 | INFO     | chi2: 3.314893758007084
[2025-11-24 11:33:42] 2025-11-24 16:33:09,526 | INFO     | current chi2=3.314893758007084 (change=44.30901696779249 %)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,526 | INFO     | sum of square deviations: 48017542919.3446
[2025-11-24 11:33:42] 2025-11-24 16:33:09,532 | INFO     | sum of deviations: 965756698246.0541
[2025-11-24 11:33:42] 2025-11-24 16:33:09,532 | INFO     | mean x: 1763984967.0931098
[2025-11-24 11:33:42] 2025-11-24 16:33:09,533 | INFO     | mean y: 3456406.8789571696
[2025-11-24 11:33:42] 2025-11-24 16:33:09,533 | INFO     | intersect: -35474833276.47764
[2025-11-24 11:33:42] 2025-11-24 16:33:09,533 | INFO     | chi2: 2.665506000405387
[2025-11-24 11:33:42] 2025-11-24 16:33:09,533 | INFO     | current chi2=2.665506000405387 (change=19.59000212399293 %)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,533 | INFO     | right removable region: 536
[2025-11-24 11:33:42] 2025-11-24 16:33:09,534 | INFO     | sum of square deviations: 49371299296.88765
[2025-11-24 11:33:42] 2025-11-24 16:33:09,540 | INFO     | sum of deviations: 507148293645.8012
[2025-11-24 11:33:42] 2025-11-24 16:33:09,540 | INFO     | mean x: 1763985424.5922508
[2025-11-24 11:33:42] 2025-11-24 16:33:09,540 | INFO     | mean y: 3447231.5239852397
[2025-11-24 11:33:42] 2025-11-24 16:33:09,541 | INFO     | intersect: -18116436402.051353
[2025-11-24 11:33:42] 2025-11-24 16:33:09,541 | INFO     | chi2: 3.498048022813365
[2025-11-24 11:33:42] 2025-11-24 16:33:09,541 | INFO     | current chi2=3.498048022813365 (change=41.23198289122066 %)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,542 | INFO     | sum of square deviations: 48017514736.5292
[2025-11-24 11:33:42] 2025-11-24 16:33:09,548 | INFO     | sum of deviations: 460986716308.9461
[2025-11-24 11:33:42] 2025-11-24 16:33:09,548 | INFO     | mean x: 1763985577.0912476
[2025-11-24 11:33:42] 2025-11-24 16:33:09,548 | INFO     | mean y: 3452427.797020484
[2025-11-24 11:33:42] 2025-11-24 16:33:09,548 | INFO     | intersect: -16931491483.013416
[2025-11-24 11:33:42] 2025-11-24 16:33:09,549 | INFO     | chi2: 3.436618508356812
[2025-11-24 11:33:42] 2025-11-24 16:33:09,549 | INFO     | current chi2=3.436618508356812 (change=1.7561083797570949 %)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,549 | INFO     | left removable region: 20
[2025-11-24 11:33:42] 2025-11-24 16:33:09,550 | INFO     | sum of square deviations: 42601591062.34636
[2025-11-24 11:33:42] 2025-11-24 16:33:09,557 | INFO     | sum of deviations: 670582989829.0927
[2025-11-24 11:33:42] 2025-11-24 16:33:09,557 | INFO     | mean x: 1763985546.5949612
[2025-11-24 11:33:42] 2025-11-24 16:33:09,557 | INFO     | mean y: 3489936.6511627906
[2025-11-24 11:33:42] 2025-11-24 16:33:09,557 | INFO     | intersect: -27763048175.0314
[2025-11-24 11:33:42] 2025-11-24 16:33:09,558 | INFO     | chi2: 0.10929984742462202
[2025-11-24 11:33:42] 2025-11-24 16:33:09,558 | INFO     | current memory leak: 15.74 B/s (using 516 data points, chi2=0.11)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,558 | INFO     | could have reported an average CPU frequency of 2455 MHz (22 samples)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,558 | INFO     | ..............................
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . Timing measurements:
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . get job = 0 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . initial setup = 2 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . payload setup = 7 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . stage-in = 0 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . payload execution = 33360 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . stage-out = 3 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | . log creation = 0 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,559 | INFO     | ..............................
[2025-11-24 11:33:42] 2025-11-24 16:33:09,640 | INFO     | 
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | job summary report
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | --------------------------------------------------
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | PanDA job id: 6895358156
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | task id: 47556137
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | errors: (none)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | pilot state: finished 
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | transexitcode: 0
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | exeerrorcode: 0
[2025-11-24 11:33:42] 2025-11-24 16:33:09,641 | INFO     | exeerrordiag: 
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | exitcode: 0
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | exitmsg: OK
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | cpuconsumptiontime: 324065 s
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | nevents: 1000
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | neventsw: 0
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | pid: 26397
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | pgrp: 26397
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | corecount: 12
[2025-11-24 11:33:42] 2025-11-24 16:33:09,642 | INFO     | event service: False
[2025-11-24 11:33:42] 2025-11-24 16:33:09,643 | INFO     | sizes: {0: 2297928, 1: 2298784, 6: 2299046, 12: 2299074, 33372: 2339954, 33376: 2349923, 33384: 2350113}
[2025-11-24 11:33:42] 2025-11-24 16:33:09,643 | INFO     | --------------------------------------------------
[2025-11-24 11:33:42] 2025-11-24 16:33:09,643 | INFO     | 
[2025-11-24 11:33:42] 2025-11-24 16:33:09,643 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 11:33:42] 2025-11-24 16:33:09,808 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,808 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,808 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,809 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,809 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,809 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,809 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,809 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,809 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,810 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,810 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,810 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,810 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,810 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,811 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,811 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 11:33:42] 2025-11-24 16:33:09,812 | INFO     | job 6895358156 has completed (purged errors)
[2025-11-24 11:33:42] 2025-11-24 16:33:09,812 | INFO     | overall cleanup function is called
[2025-11-24 11:33:42] 2025-11-24 16:33:10,828 | INFO     | --- collectZombieJob: --- 10, [26397]
[2025-11-24 11:33:42] 2025-11-24 16:33:10,828 | INFO     | zombie collector waiting for pid 26397
[2025-11-24 11:33:42] 2025-11-24 16:33:10,829 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 11:33:42] 2025-11-24 16:33:10,829 | INFO     | collected zombie processes
[2025-11-24 11:33:42] 2025-11-24 16:33:10,829 | INFO     | will attempt to kill all subprocesses of pid=26397
[2025-11-24 11:33:42] 2025-11-24 16:33:10,927 | INFO     | process IDs to be killed: [26397] (in reverse order)
[2025-11-24 11:33:42] 2025-11-24 16:33:10,980 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 11:33:42] 2025-11-24 16:33:10,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 11:33:42] 2025-11-24 16:33:10,984 | INFO     | did not find any defunct processes belonging to 26397
[2025-11-24 11:33:42] 2025-11-24 16:33:10,987 | INFO     | did not find any defunct processes belonging to 26397
[2025-11-24 11:33:42] 2025-11-24 16:33:10,990 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 11:33:42] 2025-11-24 16:33:10,990 | INFO     | ready for new job
[2025-11-24 11:33:42] 2025-11-24 16:33:10,990 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 11:33:42] 2025-11-24 16:33:10,992 | INFO     | ***************************************
[2025-11-24 11:33:42] 2025-11-24 16:33:10,992 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 11:33:42] 2025-11-24 16:33:10,993 | INFO     | ***************************************
[2025-11-24 11:33:42] 2025-11-24 16:33:10,993 | INFO     | 
[2025-11-24 11:33:42] 2025-11-24 16:33:10,993 | INFO     | architecture information:
[2025-11-24 11:33:42] 2025-11-24 16:33:10,994 | INFO     | executing command: cat /etc/os-release
[2025-11-24 11:33:42] 2025-11-24 16:33:11,008 | INFO     | cat /etc/os-release:
[2025-11-24 11:33:42] NAME="CentOS Linux"
[2025-11-24 11:33:42] VERSION="7 (Core)"
[2025-11-24 11:33:42] ID="centos"
[2025-11-24 11:33:42] ID_LIKE="rhel fedora"
[2025-11-24 11:33:42] VERSION_ID="7"
[2025-11-24 11:33:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 11:33:42] ANSI_COLOR="0;31"
[2025-11-24 11:33:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 11:33:42] HOME_URL="https://www.centos.org/"
[2025-11-24 11:33:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 11:33:42] 
[2025-11-24 11:33:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 11:33:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 11:33:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 11:33:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 11:33:42] 
[2025-11-24 11:33:42] 2025-11-24 16:33:11,009 | INFO     | ***************************************
[2025-11-24 11:33:42] 2025-11-24 16:33:11,511 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 11:33:42] 2025-11-24 16:33:11,527 | INFO     | sufficient remaining disk space (28257026048 B)
[2025-11-24 11:33:42] 2025-11-24 16:33:11,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 11:33:42] 2025-11-24 16:33:11,527 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 11:33:42] 2025-11-24 16:33:11,528 | INFO     | update_server=False
[2025-11-24 11:33:42] 2025-11-24 16:33:11,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 11:33:42] 2025-11-24 16:33:11,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:33:42] 2025-11-24 16:33:11,792 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 11:33:42] 2025-11-24 16:33:11,792 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 11:33:42] 2025-11-24 16:33:11,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 11:33:42] 2025-11-24 16:33:11,792 | INFO     | will abort loop
[2025-11-24 11:33:42] 2025-11-24 16:33:11,998 | INFO     | all payload control threads have been joined
[2025-11-24 11:33:42] 2025-11-24 16:33:12,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 11:33:42] 2025-11-24 16:33:12,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 11:33:42] 2025-11-24 16:33:12,418 | INFO     | all data control threads have been joined
[2025-11-24 11:33:42] 2025-11-24 16:33:12,533 | INFO     | [job] retrieve thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:12,534 | INFO     | [job] queue monitor thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:12,534 | INFO     | [job] validate thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:12,770 | INFO     | all job control threads have been joined
[2025-11-24 11:33:42] 2025-11-24 16:33:12,798 | INFO     | [job] job monitor thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:12,994 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,004 | INFO     | [payload] control thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,041 | INFO     | [data] copytool_in thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,421 | INFO     | [data] control thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,511 | INFO     | [payload] validate_post thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,654 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:13,775 | INFO     | [job] control thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:14,024 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:14,069 | INFO     | [payload] failed_post thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:14,295 | INFO     | [data] copytool_out thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:16,374 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 11:33:42] 2025-11-24 16:33:20,217 | INFO     | [monitor] cgroup control has ended
[2025-11-24 11:33:42] 2025-11-24 16:33:20,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287474755392)>', '<ExcThread(monitor, started 140287036872448)>']
[2025-11-24 11:33:42] 2025-11-24 16:33:25,523 | INFO     | all workflow threads have been joined
[2025-11-24 11:33:42] 2025-11-24 16:33:25,523 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 11:33:42] 2025-11-24 16:33:25,524 | INFO     | traces error code: 0
[2025-11-24 11:33:42] 2025-11-24 16:33:25,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 11:33:42] 2025-11-24 16:33:42,538 | INFO     | PID=20029 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 11:33:42] 2025-11-24 16:33:42,539 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 11:33:42] 2025-11-24 16:33:42,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 11:33:42] 2025-11-24 16:33:42,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 11:33:42] 2025-11-24 16:33:42,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 11:33:42] 2025-11-24 16:33:42,539 | INFO     | [monitor] control thread has ended
[2025-11-24 11:33:42] 2025-11-24 16:33:42,630 [wrapper] ==== pilot stdout END ====
[2025-11-24 11:33:42] 2025-11-24 16:33:42,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 11:33:42] 2025-11-24 16:33:42,638 [wrapper] pilotpid: 20029
[2025-11-24 11:33:42] 2025-11-24 16:33:42,642 [wrapper] Pilot exit status: 0
[2025-11-24 11:33:42] 2025-11-24 16:33:42,656 [wrapper] pandaids: 6895358156
[2025-11-24 11:33:42] 2025-11-24 16:33:42,695 [wrapper] cleanup supervisor_pilot 23878 20030
[2025-11-24 11:33:42] 2025-11-24 16:33:42,699 [wrapper] Test setup, not cleaning
[2025-11-24 11:33:42] 2025-11-24 16:33:42,703 [wrapper] apfmon messages muted
[2025-11-24 11:33:42] 2025-11-24 16:33:42,707 [wrapper] ==== wrapper stdout END ====
[2025-11-24 11:33:42] 2025-11-24 16:33:42,711 [wrapper] ==== wrapper stderr END ====
[2025-11-24 11:33:42]  *** Error codes and diagnostics ***
[2025-11-24 11:33:42]     "exeErrorCode": 0,
[2025-11-24 11:33:42]     "exeErrorDiag": "",
[2025-11-24 11:33:42]     "pilotErrorCode": 0,
[2025-11-24 11:33:42]     "pilotErrorDiag": "",
[2025-11-24 11:33:42]  *** Listing of results directory ***
[2025-11-24 11:33:42] total 1310056
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 07:14 pilot3.tar.gz
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 07:21 queuedata.json
[2025-11-24 11:33:42] -rwx------ 1 boincer umatlas     36292 Nov 23 07:21 runpilot2-wrapper.sh
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas       100 Nov 24 02:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 11:33:42] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 02:16 run_atlas
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas       105 Nov 24 02:16 job.xml
[2025-11-24 11:33:42] -rw-r--r-- 2 boincer umatlas 406426515 Nov 24 02:16 EVNT.47483658._000729.pool.root.1
[2025-11-24 11:33:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 02:16 start_atlas.sh
[2025-11-24 11:33:42] drwxrwx--x 2 boincer umatlas      4096 Nov 24 02:16 shared
[2025-11-24 11:33:42] -rw-r--r-- 2 boincer umatlas    590100 Nov 24 02:16 input.tar.gz
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas         0 Nov 24 02:16 boinc_lockfile
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 02:16 pandaJob.out
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas        57 Nov 24 02:16 setup.sh.local
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas    989786 Nov 24 02:16 agis_schedconf.cvmfs.json
[2025-11-24 11:33:42] drwx------ 5 boincer umatlas      4096 Nov 24 02:16 pilot3
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas       532 Nov 24 11:22 boinc_task_state.xml
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas      5956 Nov 24 11:28 init_data.xml
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas 917268931 Nov 24 11:32 HITS.47556137._007242.pool.root.1
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas        95 Nov 24 11:32 pilot_heartbeat.json
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas      1064 Nov 24 11:32 memory_monitor_summary.json
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas   1516227 Nov 24 11:33 agis_ddmendpoints.agis.ALL.json
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas   2279481 Nov 24 11:33 log.47556137._007242.job.log.tgz.1
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas      8678 Nov 24 11:33 heartbeat.json
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 11:33 boinc_mmap_file
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas        29 Nov 24 11:33 wrapper_checkpoint.txt
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas       745 Nov 24 11:33 pilotlog.txt
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas   4666574 Nov 24 11:33 log.47556137._007242.job.log.1
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas       353 Nov 24 11:33 output.list
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas       620 Nov 24 11:33 runtime_log
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas   6963200 Nov 24 11:33 result.tar.gz
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas       670 Nov 24 11:33 YixNDm3GOh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmItKKDmkSedFn.diag
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 11:33 runtime_log.err
[2025-11-24 11:33:42] -rw-r--r-- 1 boincer umatlas     21300 Nov 24 11:33 stderr.txt
[2025-11-24 11:33:42] HITS file was successfully produced:
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas 917268931 Nov 24 11:32 shared/HITS.pool.root.1
[2025-11-24 11:33:42]  *** Contents of shared directory: ***
[2025-11-24 11:33:42] total 1300076
[2025-11-24 11:33:42] -rw-r--r-- 2 boincer umatlas 406426515 Nov 24 02:16 ATLAS.root_0
[2025-11-24 11:33:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 02:16 start_atlas.sh
[2025-11-24 11:33:42] -rw-r--r-- 2 boincer umatlas    590100 Nov 24 02:16 input.tar.gz
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas 917268931 Nov 24 11:32 HITS.pool.root.1
[2025-11-24 11:33:42] -rw------- 1 boincer umatlas   6963200 Nov 24 11:33 result.tar.gz
11:33:44 (16328): run_atlas exited; CPU time 312565.809794
11:33:44 (16328): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN