Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:29:52 (722758): wrapper (7.7.26015): starting
02:29:52 (722758): wrapper: running run_atlas (--nthreads 2)
[2025-11-27 02:29:52] Arguments: --nthreads 2
[2025-11-27 02:29:52] Threads: 2
[2025-11-27 02:29:52] Checking for CVMFS
[2025-11-27 02:29:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 02:29:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 02:29:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 02:29:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 02:29:52] 2.9.2.0 3650396 7711 58592 153342 0 81 33393895 36864001 0 130560 2 2449577 99.977 275691 317 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 02:29:52] CVMFS is ok
[2025-11-27 02:29:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 02:29:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 02:29:52] Further information can be found at the LHC@home message board.
[2025-11-27 02:29:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 02:29:52] Checking for apptainer binary...
[2025-11-27 02:29:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 02:29:52] Running /usr/bin/apptainer --version
[2025-11-27 02:29:52] apptainer version 1.4.1-1.1
[2025-11-27 02:29:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 02:29:52] thA369
[2025-11-27 02:29:52] apptainer works
[2025-11-27 02:29:52] Set ATHENA_PROC_NUMBER=2
[2025-11-27 02:29:52] Set ATHENA_CORE_NUMBER=2
[2025-11-27 02:29:52] Starting ATLAS job with PandaID=6895358135
[2025-11-27 02:29:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:43:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:43:59] 2025-11-27 14:13:51,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:43:59] 2025-11-27 14:13:51,710 | INFO     | collected zombie processes
[2025-11-27 15:43:59] 2025-11-27 14:13:51,710 | INFO     | will attempt to kill all subprocesses of pid=732900
[2025-11-27 15:43:59] 2025-11-27 14:13:51,771 | INFO     | process IDs to be killed: [732900] (in reverse order)
[2025-11-27 15:43:59] 2025-11-27 14:13:51,799 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:43:59] 2025-11-27 14:13:51,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:43:59] 2025-11-27 14:13:51,801 | INFO     | did not find any defunct processes belonging to 732900
[2025-11-27 15:43:59] 2025-11-27 14:13:51,803 | INFO     | did not find any defunct processes belonging to 732900
[2025-11-27 15:43:59] 2025-11-27 14:13:51,803 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:43:59] 2025-11-27 14:13:51,803 | INFO     | ready for new job
[2025-11-27 15:43:59] 2025-11-27 14:13:51,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:43:59] 2025-11-27 14:13:51,805 | INFO     | ***************************************
[2025-11-27 15:43:59] 2025-11-27 14:13:51,805 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:43:59] 2025-11-27 14:13:51,805 | INFO     | ***************************************
[2025-11-27 15:43:59] 2025-11-27 14:13:51,805 | INFO     | 
[2025-11-27 15:43:59] 2025-11-27 14:13:51,805 | INFO     | architecture information:
[2025-11-27 15:43:59] 2025-11-27 14:13:51,805 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:43:59] 2025-11-27 14:13:51,813 | INFO     | cat /etc/os-release:
[2025-11-27 15:43:59] NAME="CentOS Linux"
[2025-11-27 15:43:59] VERSION="7 (Core)"
[2025-11-27 15:43:59] ID="centos"
[2025-11-27 15:43:59] ID_LIKE="rhel fedora"
[2025-11-27 15:43:59] VERSION_ID="7"
[2025-11-27 15:43:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:43:59] ANSI_COLOR="0;31"
[2025-11-27 15:43:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:43:59] HOME_URL="https://www.centos.org/"
[2025-11-27 15:43:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:43:59] 
[2025-11-27 15:43:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:43:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:43:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:43:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:43:59] 
[2025-11-27 15:43:59] 2025-11-27 14:13:51,813 | INFO     | ***************************************
[2025-11-27 15:43:59] 2025-11-27 14:13:52,315 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 15:43:59] 2025-11-27 14:13:52,324 | INFO     | sufficient remaining disk space (324369645568 B)
[2025-11-27 15:43:59] 2025-11-27 14:13:52,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:43:59] 2025-11-27 14:13:52,324 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:43:59] 2025-11-27 14:13:52,324 | INFO     | update_server=False
[2025-11-27 15:43:59] 2025-11-27 14:13:52,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:43:59] 2025-11-27 14:13:52,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:43:59] 2025-11-27 14:13:52,325 | INFO     | aborting loop
[2025-11-27 15:43:59] 2025-11-27 14:13:52,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:43:59] 2025-11-27 14:13:52,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:43:59] 2025-11-27 14:13:52,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:43:59] 2025-11-27 14:13:52,704 | INFO     | all data control threads have been joined
[2025-11-27 15:43:59] 2025-11-27 14:13:53,010 | INFO     | all job control threads have been joined
[2025-11-27 15:43:59] 2025-11-27 14:13:53,183 | INFO     | all payload control threads have been joined
[2025-11-27 15:43:59] 2025-11-27 14:13:53,329 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:53,329 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:53,330 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:53,490 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:53,709 | INFO     | [data] control thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:53,879 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,015 | INFO     | [job] control thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,189 | INFO     | [payload] control thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,212 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,330 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,467 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,473 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,550 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:54,800 | INFO     | [job] validate thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:13:56,566 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:14:03,281 | INFO     | job.realtimelogging is not enabled
[2025-11-27 15:43:59] 2025-11-27 14:14:04,286 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:43:59] 2025-11-27 14:14:09,438 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:43:59] 2025-11-27 14:14:11,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936216422208)>', '<ExcThread(monitor, started 139935713576704)>']
[2025-11-27 15:43:59] 2025-11-27 14:14:16,105 | INFO     | all workflow threads have been joined
[2025-11-27 15:43:59] 2025-11-27 14:14:16,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:43:59] 2025-11-27 14:14:16,105 | INFO     | traces error code: 0
[2025-11-27 15:43:59] 2025-11-27 14:14:16,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:43:59] 2025-11-27 14:14:21,996 | INFO     | PID=726468 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:43:59] 2025-11-27 14:14:21,996 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:43:59] 2025-11-27 14:14:21,996 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:43:59] 2025-11-27 14:14:21,996 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:43:59] 2025-11-27 14:14:21,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:43:59] 2025-11-27 14:14:21,996 | INFO     | [monitor] control thread has ended
[2025-11-27 15:43:59] 2025-11-27 14:14:22,038 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:43:59] 2025-11-27 14:14:22,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:43:59] 2025-11-27 14:14:22,043 [wrapper] pilotpid: 726468
[2025-11-27 15:43:59] 2025-11-27 14:14:22,045 [wrapper] Pilot exit status: 0
[2025-11-27 15:43:59] 2025-11-27 14:14:22,050 [wrapper] pandaids: 6895358135
[2025-11-27 15:43:59] 2025-11-27 14:14:22,066 [wrapper] cleanup supervisor_pilot  839230 726469
[2025-11-27 15:43:59] 2025-11-27 14:14:22,068 [wrapper] Test setup, not cleaning
[2025-11-27 15:43:59] 2025-11-27 14:14:22,070 [wrapper] apfmon messages muted
[2025-11-27 15:43:59] 2025-11-27 14:14:22,072 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:43:59] 2025-11-27 14:14:22,074 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:43:59]  *** Error codes and diagnostics ***
[2025-11-27 15:43:59]     "exeErrorCode": 0,
[2025-11-27 15:43:59]     "exeErrorDiag": "",
[2025-11-27 15:43:59]     "pilotErrorCode": 0,
[2025-11-27 15:43:59]     "pilotErrorDiag": "",
[2025-11-27 15:43:59]  *** Listing of results directory ***
[2025-11-27 15:43:59] total 1302620
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc    576529 Nov 23 13:14 pilot3.tar.gz
[2025-11-27 15:43:59] -rwx------ 1 boinc boinc     36292 Nov 23 13:23 runpilot2-wrapper.sh
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc      5112 Nov 23 13:23 queuedata.json
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc       100 Nov 27 02:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:43:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 02:29 run_atlas
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc       105 Nov 27 02:29 job.xml
[2025-11-27 15:43:59] -rw-r--r-- 2 boinc boinc 407493585 Nov 27 02:29 EVNT.47483658._001161.pool.root.1
[2025-11-27 15:43:59] drwxrwx--x 2 boinc boinc      4096 Nov 27 02:29 shared
[2025-11-27 15:43:59] -rw-r--r-- 2 boinc boinc    590101 Nov 27 02:29 input.tar.gz
[2025-11-27 15:43:59] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:29 start_atlas.sh
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:29 boinc_setup_complete
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc      6207 Nov 27 02:29 init_data.xml
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc         0 Nov 27 02:29 boinc_lockfile
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc      2785 Nov 27 02:29 pandaJob.out
[2025-11-27 15:43:59] -rw------- 1 boinc boinc    991530 Nov 27 02:29 agis_schedconf.cvmfs.json
[2025-11-27 15:43:59] drwx------ 5 boinc boinc      4096 Nov 27 02:29 pilot3
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc       531 Nov 27 15:10 boinc_task_state.xml
[2025-11-27 15:43:59] -rw------- 1 boinc boinc 907184915 Nov 27 15:13 HITS.47556149._001478.pool.root.1
[2025-11-27 15:43:59] -rw------- 1 boinc boinc        95 Nov 27 15:13 pilot_heartbeat.json
[2025-11-27 15:43:59] -rw------- 1 boinc boinc      1025 Nov 27 15:13 memory_monitor_summary.json
[2025-11-27 15:43:59] -rw------- 1 boinc boinc   1516240 Nov 27 15:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:43:59] -rw------- 1 boinc boinc   1242462 Nov 27 15:13 log.47556149._001478.job.log.tgz.1
[2025-11-27 15:43:59] -rw------- 1 boinc boinc      8559 Nov 27 15:13 heartbeat.json
[2025-11-27 15:43:59] -rw------- 1 boinc boinc       746 Nov 27 15:14 pilotlog.txt
[2025-11-27 15:43:59] -rw------- 1 boinc boinc   6406440 Nov 27 15:14 log.47556149._001478.job.log.1
[2025-11-27 15:43:59] -rw------- 1 boinc boinc       353 Nov 27 15:14 output.list
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc       620 Nov 27 15:14 runtime_log
[2025-11-27 15:43:59] -rw------- 1 boinc boinc   7669760 Nov 27 15:14 result.tar.gz
[2025-11-27 15:43:59] -rw------- 1 boinc boinc       666 Nov 27 15:14 vcSKDmsIOh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTtKKDmqNYwOn.diag
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc      8898 Nov 27 15:14 runtime_log.err
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc      8192 Nov 27 15:43 boinc_mmap_file
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc        28 Nov 27 15:43 wrapper_checkpoint.txt
[2025-11-27 15:43:59] -rw-r--r-- 1 boinc boinc     10723 Nov 27 15:43 stderr.txt
[2025-11-27 15:43:59] HITS file was successfully produced:
[2025-11-27 15:43:59] -rw------- 1 boinc boinc 907184915 Nov 27 15:13 shared/HITS.pool.root.1
[2025-11-27 15:43:59]  *** Contents of shared directory: ***
[2025-11-27 15:43:59] total 1291964
[2025-11-27 15:43:59] -rw-r--r-- 2 boinc boinc 407493585 Nov 27 02:29 ATLAS.root_0
[2025-11-27 15:43:59] -rw-r--r-- 2 boinc boinc    590101 Nov 27 02:29 input.tar.gz
[2025-11-27 15:43:59] -rw-r--r-- 2 boinc boinc     15847 Nov 27 02:29 start_atlas.sh
[2025-11-27 15:43:59] -rw------- 1 boinc boinc 907184915 Nov 27 15:13 HITS.pool.root.1
[2025-11-27 15:43:59] -rw------- 1 boinc boinc   7669760 Nov 27 15:14 result.tar.gz
15:44:01 (722758): run_atlas exited; CPU time 91147.325185
15:44:01 (722758): called boinc_finish(0)

</stderr_txt>
]]>

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