Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:29:03 (2441848): wrapper (7.7.26015): starting
10:29:03 (2441848): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 10:29:03] Arguments: --nthreads 4
[2025-11-26 10:29:03] Threads: 4
[2025-11-26 10:29:03] Checking for CVMFS
[2025-11-26 10:29:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:29:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:29:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:29:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:29:03] 2.9.2.0 849437 11039 112180 153316 1 81 31620434 36864000 0 130560 1 4408245 99.935 562703 886 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 10:29:03] CVMFS is ok
[2025-11-26 10:29:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:29:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:29:03] Further information can be found at the LHC@home message board.
[2025-11-26 10:29:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:29:03] Checking for apptainer binary...
[2025-11-26 10:29:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:29:03] Running /usr/bin/apptainer --version
[2025-11-26 10:29:03] apptainer version 1.4.1-1.1
[2025-11-26 10:29:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:29:03] iaxoA393
[2025-11-26 10:29:03] apptainer works
[2025-11-26 10:29:03] Set ATHENA_PROC_NUMBER=4
[2025-11-26 10:29:03] Set ATHENA_CORE_NUMBER=4
[2025-11-26 10:29:03] Starting ATLAS job with PandaID=6895351238
[2025-11-26 10:29:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:26:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:26:53] 2025-11-26 16:26:21,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | job 6895351238 has completed (purged errors)
[2025-11-26 17:26:53] 2025-11-26 16:26:21,392 | INFO     | overall cleanup function is called
[2025-11-26 17:26:53] 2025-11-26 16:26:22,401 | INFO     | --- collectZombieJob: --- 10, [2452217]
[2025-11-26 17:26:53] 2025-11-26 16:26:22,401 | INFO     | zombie collector waiting for pid 2452217
[2025-11-26 17:26:53] 2025-11-26 16:26:22,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:26:53] 2025-11-26 16:26:22,402 | INFO     | collected zombie processes
[2025-11-26 17:26:53] 2025-11-26 16:26:22,402 | INFO     | will attempt to kill all subprocesses of pid=2452217
[2025-11-26 17:26:53] 2025-11-26 16:26:22,446 | INFO     | process IDs to be killed: [2452217] (in reverse order)
[2025-11-26 17:26:53] 2025-11-26 16:26:22,477 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:26:53] 2025-11-26 16:26:22,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:26:53] 2025-11-26 16:26:22,479 | INFO     | did not find any defunct processes belonging to 2452217
[2025-11-26 17:26:53] 2025-11-26 16:26:22,480 | INFO     | did not find any defunct processes belonging to 2452217
[2025-11-26 17:26:53] 2025-11-26 16:26:22,481 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:26:53] 2025-11-26 16:26:22,481 | INFO     | ready for new job
[2025-11-26 17:26:53] 2025-11-26 16:26:22,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:26:53] 2025-11-26 16:26:22,482 | INFO     | ***************************************
[2025-11-26 17:26:53] 2025-11-26 16:26:22,482 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:26:53] 2025-11-26 16:26:22,482 | INFO     | ***************************************
[2025-11-26 17:26:53] 2025-11-26 16:26:22,482 | INFO     | 
[2025-11-26 17:26:53] 2025-11-26 16:26:22,482 | INFO     | architecture information:
[2025-11-26 17:26:53] 2025-11-26 16:26:22,483 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:26:53] 2025-11-26 16:26:22,495 | INFO     | cat /etc/os-release:
[2025-11-26 17:26:53] NAME="CentOS Linux"
[2025-11-26 17:26:53] VERSION="7 (Core)"
[2025-11-26 17:26:53] ID="centos"
[2025-11-26 17:26:53] ID_LIKE="rhel fedora"
[2025-11-26 17:26:53] VERSION_ID="7"
[2025-11-26 17:26:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:26:53] ANSI_COLOR="0;31"
[2025-11-26 17:26:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:26:53] HOME_URL="https://www.centos.org/"
[2025-11-26 17:26:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:26:53] 
[2025-11-26 17:26:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:26:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:26:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:26:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:26:53] 
[2025-11-26 17:26:53] 2025-11-26 16:26:22,495 | INFO     | ***************************************
[2025-11-26 17:26:53] 2025-11-26 16:26:22,999 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | INFO     | sufficient remaining disk space (325015568384 B)
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | INFO     | update_server=False
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | INFO     | aborting loop
[2025-11-26 17:26:53] 2025-11-26 16:26:23,015 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:26:53] 2025-11-26 16:26:24,018 | INFO     | all payload control threads have been joined
[2025-11-26 17:26:53] 2025-11-26 16:26:24,018 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,020 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,021 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,031 | INFO     | all data control threads have been joined
[2025-11-26 17:26:53] 2025-11-26 16:26:24,085 | INFO     | all job control threads have been joined
[2025-11-26 17:26:53] 2025-11-26 16:26:24,373 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,407 | INFO     | [job] validate thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:26:53] 2025-11-26 16:26:24,517 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,561 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:24,887 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:25,024 | INFO     | [payload] control thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:25,034 | INFO     | [data] control thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:25,091 | INFO     | [job] control thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:25,117 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:25,289 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:25,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:26,414 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:27,022 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:26:53] 2025-11-26 16:26:40,139 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:26:53] 2025-11-26 16:26:42,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139841468680000)>', '<ExcThread(monitor, started 139840158947072)>']
[2025-11-26 17:26:53] 2025-11-26 16:26:47,209 | INFO     | all workflow threads have been joined
[2025-11-26 17:26:53] 2025-11-26 16:26:47,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:26:53] 2025-11-26 16:26:47,210 | INFO     | traces error code: 0
[2025-11-26 17:26:53] 2025-11-26 16:26:47,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:26:53] 2025-11-26 16:26:53,669 | INFO     | PID=2445630 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:26:53] 2025-11-26 16:26:53,669 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:26:53] 2025-11-26 16:26:53,670 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:26:53] 2025-11-26 16:26:53,670 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:26:53] 2025-11-26 16:26:53,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:26:53] 2025-11-26 16:26:53,670 | INFO     | [monitor] control thread has ended
[2025-11-26 17:26:53] 2025-11-26 16:26:53,733 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:26:53] 2025-11-26 16:26:53,737 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:26:53] 2025-11-26 16:26:53,741 [wrapper] pilotpid: 2445630
[2025-11-26 17:26:53] 2025-11-26 16:26:53,744 [wrapper] Pilot exit status: 0
[2025-11-26 17:26:53] 2025-11-26 16:26:53,755 [wrapper] pandaids: 6895351238
[2025-11-26 17:26:53] 2025-11-26 16:26:53,776 [wrapper] cleanup supervisor_pilot 2497436 2445631
[2025-11-26 17:26:53] 2025-11-26 16:26:53,780 [wrapper] Test setup, not cleaning
[2025-11-26 17:26:53] 2025-11-26 16:26:53,784 [wrapper] apfmon messages muted
[2025-11-26 17:26:53] 2025-11-26 16:26:53,787 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:26:53] 2025-11-26 16:26:53,791 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:26:53]  *** Error codes and diagnostics ***
[2025-11-26 17:26:53]     "exeErrorCode": 0,
[2025-11-26 17:26:53]     "exeErrorDiag": "",
[2025-11-26 17:26:53]     "pilotErrorCode": 0,
[2025-11-26 17:26:53]     "pilotErrorDiag": "",
[2025-11-26 17:26:53]  *** Listing of results directory ***
[2025-11-26 17:26:53] total 1310016
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc      5112 Nov 23 00:50 queuedata.json
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc    576529 Nov 23 00:50 pilot3.tar.gz
[2025-11-26 17:26:53] -rwx------ 1 boinc boinc     36292 Nov 23 00:50 runpilot2-wrapper.sh
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc       100 Nov 26 10:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:26:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 10:29 run_atlas
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc       105 Nov 26 10:29 job.xml
[2025-11-26 17:26:53] -rw-r--r-- 2 boinc boinc 407514142 Nov 26 10:29 EVNT.47483658._000542.pool.root.1
[2025-11-26 17:26:53] -rw-r--r-- 2 boinc boinc    590102 Nov 26 10:29 input.tar.gz
[2025-11-26 17:26:53] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:29 start_atlas.sh
[2025-11-26 17:26:53] drwxrwx--x 2 boinc boinc      4096 Nov 26 10:29 shared
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:29 boinc_setup_complete
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc      6373 Nov 26 10:29 init_data.xml
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc         0 Nov 26 10:29 boinc_lockfile
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc      2785 Nov 26 10:29 pandaJob.out
[2025-11-26 17:26:53] -rw------- 1 boinc boinc    991827 Nov 26 10:29 agis_schedconf.cvmfs.json
[2025-11-26 17:26:53] drwx------ 5 boinc boinc      4096 Nov 26 10:29 pilot3
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc       532 Nov 26 17:19 boinc_task_state.xml
[2025-11-26 17:26:53] -rw------- 1 boinc boinc 920469162 Nov 26 17:25 HITS.47556137._005376.pool.root.1
[2025-11-26 17:26:53] -rw------- 1 boinc boinc      1030 Nov 26 17:25 memory_monitor_summary.json
[2025-11-26 17:26:53] -rw------- 1 boinc boinc   1516240 Nov 26 17:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:26:53] -rw------- 1 boinc boinc   1256349 Nov 26 17:26 log.47556137._005376.job.log.tgz.1
[2025-11-26 17:26:53] -rw------- 1 boinc boinc      8585 Nov 26 17:26 heartbeat.json
[2025-11-26 17:26:53] -rw------- 1 boinc boinc        95 Nov 26 17:26 pilot_heartbeat.json
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc      8192 Nov 26 17:26 boinc_mmap_file
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc        28 Nov 26 17:26 wrapper_checkpoint.txt
[2025-11-26 17:26:53] -rw------- 1 boinc boinc       747 Nov 26 17:26 pilotlog.txt
[2025-11-26 17:26:53] -rw------- 1 boinc boinc   3529857 Nov 26 17:26 log.47556137._005376.job.log.1
[2025-11-26 17:26:53] -rw------- 1 boinc boinc       353 Nov 26 17:26 output.list
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc       620 Nov 26 17:26 runtime_log
[2025-11-26 17:26:53] -rw------- 1 boinc boinc   4802560 Nov 26 17:26 result.tar.gz
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc      8908 Nov 26 17:26 runtime_log.err
[2025-11-26 17:26:53] -rw------- 1 boinc boinc       667 Nov 26 17:26 bkdMDmOYCh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmSKKDmQwYZym.diag
[2025-11-26 17:26:53] -rw-r--r-- 1 boinc boinc     12366 Nov 26 17:26 stderr.txt
[2025-11-26 17:26:53] HITS file was successfully produced:
[2025-11-26 17:26:53] -rw------- 1 boinc boinc 920469162 Nov 26 17:25 shared/HITS.pool.root.1
[2025-11-26 17:26:53]  *** Contents of shared directory: ***
[2025-11-26 17:26:53] total 1302156
[2025-11-26 17:26:53] -rw-r--r-- 2 boinc boinc 407514142 Nov 26 10:29 ATLAS.root_0
[2025-11-26 17:26:53] -rw-r--r-- 2 boinc boinc    590102 Nov 26 10:29 input.tar.gz
[2025-11-26 17:26:53] -rw-r--r-- 2 boinc boinc     15847 Nov 26 10:29 start_atlas.sh
[2025-11-26 17:26:53] -rw------- 1 boinc boinc 920469162 Nov 26 17:25 HITS.pool.root.1
[2025-11-26 17:26:53] -rw------- 1 boinc boinc   4802560 Nov 26 17:26 result.tar.gz
17:26:54 (2441848): run_atlas exited; CPU time 97267.971724
17:26:54 (2441848): called boinc_finish(0)

</stderr_txt>
]]>

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