Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
00:35:53 (1046912): wrapper (7.7.26015): starting
00:35:53 (1046912): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 07:59:03] Arguments: --nthreads 4
[2025-11-24 07:59:03] Threads: 4
[2025-11-24 07:59:03] Checking for CVMFS
[2025-11-24 07:59:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 07:59:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 07:59:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 07:59:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 07:59:03] 2.13.2.0 213864 898 47812 153238 3 66 4065722 4096001 4421 130560 0 2567667 99.801 321491 876 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 07:59:03] CVMFS is ok
[2025-11-24 07:59:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 07:59:03] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 07:59:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 07:59:03] Further information can be found at the LHC@home message board.
[2025-11-24 07:59:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 07:59:03] Checking for apptainer binary...
[2025-11-24 07:59:03] apptainer is not installed, using version from CVMFS
[2025-11-24 07:59:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 07:59:03] X670EPG
[2025-11-24 07:59:03] apptainer works
[2025-11-24 07:59:03] Set ATHENA_PROC_NUMBER=4
[2025-11-24 07:59:03] Set ATHENA_CORE_NUMBER=4
[2025-11-24 07:59:03] Starting ATLAS job with PandaID=6895351243
[2025-11-24 07:59:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:59:03]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:59:03] 2025-11-24 14:58:28,555 | INFO     | monitor loop #2009: job 0:6895351243 is in state 'finished'
[2025-11-24 07:59:03] 2025-11-24 14:58:28,556 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:59:03] 2025-11-24 14:58:29,514 | INFO     | time since job start (26546s) is within the limit (172800.0s)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,234 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 07:59:03] 2025-11-24 14:58:30,237 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4589.9788125
[2025-11-24 07:59:03] 2025-11-24 14:58:30,240 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6895351243/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,240 | INFO     | extracted standard info from prmon json
[2025-11-24 07:59:03] 2025-11-24 14:58:30,240 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:59:03] 2025-11-24 14:58:30,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:59:03] 2025-11-24 14:58:30,243 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:59:03] 2025-11-24 14:58:30,243 | INFO     | sum of square deviations: 25523715770.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,245 | INFO     | sum of deviations: 181770525358.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,245 | INFO     | mean x: 1763983018.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,246 | INFO     | mean y: 2248169.167816092
[2025-11-24 07:59:03] 2025-11-24 14:58:30,246 | INFO     | intersect: -12560190732.511364
[2025-11-24 07:59:03] 2025-11-24 14:58:30,246 | INFO     | chi2: 3.3228128839228406
[2025-11-24 07:59:03] 2025-11-24 14:58:30,246 | INFO     | sum of square deviations: 24653662247.5
[2025-11-24 07:59:03] 2025-11-24 14:58:30,248 | INFO     | sum of deviations: 231647920351.00003
[2025-11-24 07:59:03] 2025-11-24 14:58:30,248 | INFO     | mean x: 1763982865.5
[2025-11-24 07:59:03] 2025-11-24 14:58:30,248 | INFO     | mean y: 2256854.6093023256
[2025-11-24 07:59:03] 2025-11-24 14:58:30,248 | INFO     | intersect: -16572277112.217844
[2025-11-24 07:59:03] 2025-11-24 14:58:30,248 | INFO     | chi2: 1.9427143872364183
[2025-11-24 07:59:03] 2025-11-24 14:58:30,248 | INFO     | current chi2=1.9427143872364183 (change=41.534041936695154 %)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,249 | INFO     | sum of square deviations: 23803609100.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,250 | INFO     | sum of deviations: 226637572744.99997
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | mean x: 1763982713.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | mean y: 2255955.785882353
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | intersect: -16792876192.408396
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | chi2: 1.9422557297325502
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | current chi2=1.9422557297325502 (change=0.023609106252646034 %)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | right removable region: 424
[2025-11-24 07:59:03] 2025-11-24 14:58:30,251 | INFO     | sum of square deviations: 24653662247.5
[2025-11-24 07:59:03] 2025-11-24 14:58:30,253 | INFO     | sum of deviations: 99236304442.99997
[2025-11-24 07:59:03] 2025-11-24 14:58:30,253 | INFO     | mean x: 1763983170.5
[2025-11-24 07:59:03] 2025-11-24 14:58:30,253 | INFO     | mean y: 2262589.1906976746
[2025-11-24 07:59:03] 2025-11-24 14:58:30,253 | INFO     | intersect: -7098149884.328012
[2025-11-24 07:59:03] 2025-11-24 14:58:30,253 | INFO     | chi2: 1.4235345699469026
[2025-11-24 07:59:03] 2025-11-24 14:58:30,253 | INFO     | current chi2=1.4235345699469026 (change=57.1587501410459 %)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,254 | INFO     | sum of square deviations: 23803609100.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,255 | INFO     | sum of deviations: 89402264046.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | mean x: 1763983323.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | mean y: 2264351.0611764705
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | intersect: -6622953789.308408
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | chi2: 1.4152429278439054
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | current chi2=1.4152429278439054 (change=0.5824686156590171 %)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | left removable region: 20
[2025-11-24 07:59:03] 2025-11-24 14:58:30,256 | INFO     | sum of square deviations: 20446541505.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | sum of deviations: 120879681259.0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | mean x: 1763983292.5
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | mean y: 2275239.1039603963
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | intersect: -10426370509.687254
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | chi2: 0.01483088068081253
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | current memory leak: 5.91 B/s (using 404 data points, chi2=0.01)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | could have reported an average CPU frequency of 4608 MHz (18 samples)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | ..............................
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | . Timing measurements:
[2025-11-24 07:59:03] 2025-11-24 14:58:30,258 | INFO     | . get job = 0 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | . initial setup = 5 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | . payload setup = 2 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | . stage-in = 0 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | . payload execution = 26518 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | . stage-out = 2 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | . log creation = 0 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,259 | INFO     | ..............................
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | 
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | job summary report
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | --------------------------------------------------
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | PanDA job id: 6895351243
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | task id: 47556137
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | errors: (none)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | pilot state: finished 
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | transexitcode: 0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | exeerrorcode: 0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | exeerrordiag: 
[2025-11-24 07:59:03] 2025-11-24 14:58:30,301 | INFO     | exitcode: 0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | exitmsg: OK
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | cpuconsumptiontime: 104957 s
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | nevents: 1000
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | neventsw: 0
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | pid: 1059541
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | pgrp: 1059541
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | corecount: 4
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | event service: False
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | sizes: {0: 2298643, 1: 2298757, 3: 2299047, 11: 2299075, 26524: 2336675, 26528: 2346474, 26531: 2346658, 26534: 2346904}
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | --------------------------------------------------
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | 
[2025-11-24 07:59:03] 2025-11-24 14:58:30,302 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,312 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:59:03] 2025-11-24 14:58:30,313 | INFO     | job 6895351243 has completed (purged errors)
[2025-11-24 07:59:03] 2025-11-24 14:58:30,313 | INFO     | overall cleanup function is called
[2025-11-24 07:59:03] 2025-11-24 14:58:31,322 | INFO     | --- collectZombieJob: --- 10, [1059541]
[2025-11-24 07:59:03] 2025-11-24 14:58:31,322 | INFO     | zombie collector waiting for pid 1059541
[2025-11-24 07:59:03] 2025-11-24 14:58:31,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:59:03] 2025-11-24 14:58:31,323 | INFO     | collected zombie processes
[2025-11-24 07:59:03] 2025-11-24 14:58:31,323 | INFO     | will attempt to kill all subprocesses of pid=1059541
[2025-11-24 07:59:03] 2025-11-24 14:58:31,409 | INFO     | process IDs to be killed: [1059541] (in reverse order)
[2025-11-24 07:59:03] 2025-11-24 14:58:31,454 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:59:03] 2025-11-24 14:58:31,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:59:03] 2025-11-24 14:58:31,458 | INFO     | did not find any defunct processes belonging to 1059541
[2025-11-24 07:59:03] 2025-11-24 14:58:31,460 | INFO     | did not find any defunct processes belonging to 1059541
[2025-11-24 07:59:03] 2025-11-24 14:58:31,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:59:03] 2025-11-24 14:58:31,460 | INFO     | ready for new job
[2025-11-24 07:59:03] 2025-11-24 14:58:31,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:59:03] 2025-11-24 14:58:31,462 | INFO     | ***************************************
[2025-11-24 07:59:03] 2025-11-24 14:58:31,462 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:59:03] 2025-11-24 14:58:31,462 | INFO     | ***************************************
[2025-11-24 07:59:03] 2025-11-24 14:58:31,462 | INFO     | 
[2025-11-24 07:59:03] 2025-11-24 14:58:31,463 | INFO     | architecture information:
[2025-11-24 07:59:03] 2025-11-24 14:58:31,463 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:59:03] 2025-11-24 14:58:31,473 | INFO     | cat /etc/os-release:
[2025-11-24 07:59:03] NAME="CentOS Linux"
[2025-11-24 07:59:03] VERSION="7 (Core)"
[2025-11-24 07:59:03] ID="centos"
[2025-11-24 07:59:03] ID_LIKE="rhel fedora"
[2025-11-24 07:59:03] VERSION_ID="7"
[2025-11-24 07:59:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:59:03] ANSI_COLOR="0;31"
[2025-11-24 07:59:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:59:03] HOME_URL="https://www.centos.org/"
[2025-11-24 07:59:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:59:03] 
[2025-11-24 07:59:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:59:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:59:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:59:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:59:03] 
[2025-11-24 07:59:03] 2025-11-24 14:58:31,473 | INFO     | ***************************************
[2025-11-24 07:59:03] 2025-11-24 14:58:31,973 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | INFO     | sufficient remaining disk space (424418476032 B)
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | INFO     | update_server=False
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:59:03] 2025-11-24 14:58:31,984 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:59:03] 2025-11-24 14:58:32,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:59:03] 2025-11-24 14:58:32,062 | INFO     | aborting loop
[2025-11-24 07:59:03] 2025-11-24 14:58:32,438 | INFO     | all job control threads have been joined
[2025-11-24 07:59:03] 2025-11-24 14:58:32,853 | INFO     | all data control threads have been joined
[2025-11-24 07:59:03] 2025-11-24 14:58:32,980 | INFO     | all payload control threads have been joined
[2025-11-24 07:59:03] 2025-11-24 14:58:32,988 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:32,989 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,066 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,368 | INFO     | [job] validate thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,385 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,438 | INFO     | [job] control thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,448 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:59:03] 2025-11-24 14:58:33,567 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,858 | INFO     | [data] control thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,891 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,981 | INFO     | [payload] control thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:33,988 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:34,206 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:34,386 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:34,460 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:37,454 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:59:03] 2025-11-24 14:58:46,506 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:59:03] 2025-11-24 14:58:46,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123446144132928)>', '<ExcThread(monitor, started 123445545273088)>']
[2025-11-24 07:59:03] 2025-11-24 14:58:51,593 | INFO     | all workflow threads have been joined
[2025-11-24 07:59:03] 2025-11-24 14:58:51,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:59:03] 2025-11-24 14:58:51,593 | INFO     | traces error code: 0
[2025-11-24 07:59:03] 2025-11-24 14:58:51,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:59:03] 2025-11-24 14:59:02,675 | INFO     | PID=1050765 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:59:03] 2025-11-24 14:59:02,676 | INFO     | .. there are 7 such processes running
[2025-11-24 07:59:03] 2025-11-24 14:59:02,676 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:59:03] 2025-11-24 14:59:02,676 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:59:03] 2025-11-24 14:59:02,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:59:03] 2025-11-24 14:59:02,676 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:59:03] 2025-11-24 14:59:02,676 | INFO     | [monitor] control thread has ended
[2025-11-24 07:59:03] 2025-11-24 14:59:02,732 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:59:03] 2025-11-24 14:59:02,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:59:03] 2025-11-24 14:59:02,735 [wrapper] pilotpid: 1050765
[2025-11-24 07:59:03] 2025-11-24 14:59:02,737 [wrapper] Pilot exit status: 0
[2025-11-24 07:59:03] 2025-11-24 14:59:02,742 [wrapper] pandaids: 6895351243
[2025-11-24 07:59:03] 2025-11-24 14:59:02,766 [wrapper] cleanup supervisor_pilot 1397928 1050766
[2025-11-24 07:59:03] 2025-11-24 14:59:02,768 [wrapper] Test setup, not cleaning
[2025-11-24 07:59:03] 2025-11-24 14:59:02,769 [wrapper] apfmon messages muted
[2025-11-24 07:59:03] 2025-11-24 14:59:02,771 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:59:03] 2025-11-24 14:59:02,772 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:59:03]  *** Error codes and diagnostics ***
[2025-11-24 07:59:03]     "exeErrorCode": 0,
[2025-11-24 07:59:03]     "exeErrorDiag": "",
[2025-11-24 07:59:03]     "pilotErrorCode": 0,
[2025-11-24 07:59:03]     "pilotErrorDiag": "",
[2025-11-24 07:59:03]  *** Listing of results directory ***
[2025-11-24 07:59:03] total 1307952
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc    576529 Nov 22 16:34 pilot3.tar.gz
[2025-11-24 07:59:03] -rwx------ 1 boinc boinc     36292 Nov 22 16:47 runpilot2-wrapper.sh
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc      5112 Nov 22 16:47 queuedata.json
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc       100 Nov 24 00:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:59:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 00:35 run_atlas
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc       105 Nov 24 00:35 job.xml
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc      9983 Nov 24 00:35 init_data.xml
[2025-11-24 07:59:03] -rw-r--r-- 2 boinc boinc 408128205 Nov 24 00:35 EVNT.47483658._000543.pool.root.1
[2025-11-24 07:59:03] -rw-r--r-- 2 boinc boinc     15847 Nov 24 00:35 start_atlas.sh
[2025-11-24 07:59:03] drwxrwx--x 2 boinc boinc      4096 Nov 24 00:35 shared
[2025-11-24 07:59:03] -rw-r--r-- 2 boinc boinc    590100 Nov 24 00:35 input.tar.gz
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc       112 Nov 24 00:35 stderr.txt
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc         0 Nov 24 00:35 boinc_lockfile
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc      2782 Nov 24 00:35 pandaJob.out
[2025-11-24 07:59:03] -rw------- 1 boinc boinc    989786 Nov 24 00:35 agis_schedconf.cvmfs.json
[2025-11-24 07:59:03] drwx------ 5 boinc boinc      4096 Nov 24 00:36 pilot3
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc       532 Nov 24 07:55 boinc_task_state.xml
[2025-11-24 07:59:03] -rw------- 1 boinc boinc 917097405 Nov 24 07:58 HITS.47556137._005381.pool.root.1
[2025-11-24 07:59:03] -rw------- 1 boinc boinc      1031 Nov 24 07:58 memory_monitor_summary.json
[2025-11-24 07:59:03] -rw------- 1 boinc boinc        95 Nov 24 07:58 pilot_heartbeat.json
[2025-11-24 07:59:03] -rw------- 1 boinc boinc   1516227 Nov 24 07:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:59:03] -rw------- 1 boinc boinc   1263745 Nov 24 07:58 log.47556137._005381.job.log.tgz.1
[2025-11-24 07:59:03] -rw------- 1 boinc boinc      8554 Nov 24 07:58 heartbeat.json
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc        29 Nov 24 07:58 wrapper_checkpoint.txt
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc      8192 Nov 24 07:58 boinc_mmap_file
[2025-11-24 07:59:03] -rw------- 1 boinc boinc       822 Nov 24 07:59 pilotlog.txt
[2025-11-24 07:59:03] -rw------- 1 boinc boinc   3848130 Nov 24 07:59 log.47556137._005381.job.log.1
[2025-11-24 07:59:03] -rw------- 1 boinc boinc       353 Nov 24 07:59 output.list
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc       620 Nov 24 07:59 runtime_log
[2025-11-24 07:59:03] -rw------- 1 boinc boinc   5130240 Nov 24 07:59 result.tar.gz
[2025-11-24 07:59:03] -rw-r--r-- 1 boinc boinc      8920 Nov 24 07:59 runtime_log.err
[2025-11-24 07:59:03] -rw------- 1 boinc boinc       661 Nov 24 07:59 JLqKDmGVCh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfSKKDm6uLXUm.diag
[2025-11-24 07:59:03] HITS file was successfully produced:
[2025-11-24 07:59:03] -rw------- 1 boinc boinc 917097405 Nov 24 07:58 shared/HITS.pool.root.1
[2025-11-24 07:59:03]  *** Contents of shared directory: ***
[2025-11-24 07:59:03] total 1299784
[2025-11-24 07:59:03] -rw-r--r-- 2 boinc boinc 408128205 Nov 24 00:35 ATLAS.root_0
[2025-11-24 07:59:03] -rw-r--r-- 2 boinc boinc     15847 Nov 24 00:35 start_atlas.sh
[2025-11-24 07:59:03] -rw-r--r-- 2 boinc boinc    590100 Nov 24 00:35 input.tar.gz
[2025-11-24 07:59:03] -rw------- 1 boinc boinc 917097405 Nov 24 07:58 HITS.pool.root.1
[2025-11-24 07:59:03] -rw------- 1 boinc boinc   5130240 Nov 24 07:59 result.tar.gz
07:59:04 (1046912): run_atlas exited; CPU time 104971.584992
07:59:04 (1046912): called boinc_finish(0)

</stderr_txt>
]]>

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