Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:39 (1224926): wrapper (7.7.26015): starting
14:53:39 (1224926): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 14:53:39] Arguments: --nthreads 4
[2025-11-25 14:53:39] Threads: 4
[2025-11-25 14:53:39] Checking for CVMFS
[2025-11-25 14:53:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 14:53:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 14:53:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 14:53:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 14:53:40] 2.13.3.0 6033 5714 78332 153284 0 81 2480183 4097024 0 130560 3 2117265 99.981 209250 7260 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-25 14:53:40] CVMFS is ok
[2025-11-25 14:53:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 14:53:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 14:53:40] Further information can be found at the LHC@home message board.
[2025-11-25 14:53:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 14:53:40] Checking for apptainer binary...
[2025-11-25 14:53:40] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-11-25 14:53:40] apptainer is not installed, using version from CVMFS
[2025-11-25 14:53:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 14:53:42] pckeatlas07
[2025-11-25 14:53:42] apptainer works
[2025-11-25 14:53:42] Set ATHENA_PROC_NUMBER=4
[2025-11-25 14:53:42] Set ATHENA_CORE_NUMBER=4
[2025-11-25 14:53:42] Starting ATLAS job with PandaID=6895357720
[2025-11-25 14:53:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:10:13]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:10:13] 2025-11-26 03:09:10,897 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 04:10:13] 2025-11-26 03:09:11,595 | INFO     | monitor loop #3608: job 0:6895357720 is in state 'finished'
[2025-11-26 04:10:13] 2025-11-26 03:09:11,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:10:13] 2025-11-26 03:09:12,328 | INFO     | time since job start (47725s) is within the limit (172800.0s)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,492 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 04:10:13] 2025-11-26 03:09:13,493 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3758.0515
[2025-11-26 04:10:13] 2025-11-26 03:09:13,494 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6895357720/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,494 | INFO     | extracted standard info from prmon json
[2025-11-26 04:10:13] 2025-11-26 03:09:13,494 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:10:13] 2025-11-26 03:09:13,494 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:10:13] 2025-11-26 03:09:13,501 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:10:13] 2025-11-26 03:09:13,502 | INFO     | sum of square deviations: 148285256575.5
[2025-11-26 04:10:13] 2025-11-26 03:09:13,509 | INFO     | sum of deviations: 591496520988.4999
[2025-11-26 04:10:13] 2025-11-26 03:09:13,509 | INFO     | mean x: 1764102668.5
[2025-11-26 04:10:13] 2025-11-26 03:09:13,509 | INFO     | mean y: 2403490.8554987214
[2025-11-26 04:10:13] 2025-11-26 03:09:13,509 | INFO     | intersect: -7034443024.988085
[2025-11-26 04:10:13] 2025-11-26 03:09:13,510 | INFO     | chi2: 2.334299509633175
[2025-11-26 04:10:13] 2025-11-26 03:09:13,510 | INFO     | sum of square deviations: 145459054748.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,518 | INFO     | sum of deviations: 686755881783.9999
[2025-11-26 04:10:13] 2025-11-26 03:09:13,518 | INFO     | mean x: 1764102516.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,518 | INFO     | mean y: 2408616.3667953666
[2025-11-26 04:10:13] 2025-11-26 03:09:13,518 | INFO     | intersect: -8326449157.608327
[2025-11-26 04:10:13] 2025-11-26 03:09:13,518 | INFO     | chi2: 1.318577328471026
[2025-11-26 04:10:13] 2025-11-26 03:09:13,518 | INFO     | current chi2=1.318577328471026 (change=43.512932979271596 %)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,519 | INFO     | sum of square deviations: 142668993133.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,526 | INFO     | sum of deviations: 678181206273.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,526 | INFO     | mean x: 1764102363.5
[2025-11-26 04:10:13] 2025-11-26 03:09:13,526 | INFO     | mean y: 2408147.6813471504
[2025-11-26 04:10:13] 2025-11-26 03:09:13,526 | INFO     | intersect: -8383303720.013554
[2025-11-26 04:10:13] 2025-11-26 03:09:13,527 | INFO     | chi2: 1.3177018008546444
[2025-11-26 04:10:13] 2025-11-26 03:09:13,527 | INFO     | current chi2=1.3177018008546444 (change=0.06639941378310248 %)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,527 | INFO     | right removable region: 771
[2025-11-26 04:10:13] 2025-11-26 03:09:13,527 | INFO     | sum of square deviations: 145459054748.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,534 | INFO     | sum of deviations: 493817975467.00006
[2025-11-26 04:10:13] 2025-11-26 03:09:13,534 | INFO     | mean x: 1764102821.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,535 | INFO     | mean y: 2408744.362934363
[2025-11-26 04:10:13] 2025-11-26 03:09:13,535 | INFO     | intersect: -5986532164.754458
[2025-11-26 04:10:13] 2025-11-26 03:09:13,535 | INFO     | chi2: 1.1609823905712744
[2025-11-26 04:10:13] 2025-11-26 03:09:13,535 | INFO     | current chi2=1.1609823905712744 (change=50.26420620918016 %)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,536 | INFO     | sum of square deviations: 142668993133.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,543 | INFO     | sum of deviations: 480420416573.99976
[2025-11-26 04:10:13] 2025-11-26 03:09:13,543 | INFO     | mean x: 1764102973.5
[2025-11-26 04:10:13] 2025-11-26 03:09:13,543 | INFO     | mean y: 2409476.2720207255
[2025-11-26 04:10:13] 2025-11-26 03:09:13,544 | INFO     | intersect: -5937991915.768563
[2025-11-26 04:10:13] 2025-11-26 03:09:13,544 | INFO     | chi2: 1.1600046479624575
[2025-11-26 04:10:13] 2025-11-26 03:09:13,544 | INFO     | current chi2=1.1600046479624575 (change=0.08421683367098964 %)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,544 | INFO     | left removable region: 20
[2025-11-26 04:10:13] 2025-11-26 03:09:13,545 | INFO     | sum of square deviations: 131340137000.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,551 | INFO     | sum of deviations: 548270544492.9999
[2025-11-26 04:10:13] 2025-11-26 03:09:13,551 | INFO     | mean x: 1764102943.0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,551 | INFO     | mean y: 2415186.8735019974
[2025-11-26 04:10:13] 2025-11-26 03:09:13,551 | INFO     | intersect: -7361713579.798285
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | chi2: 0.1386809416554782
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | current memory leak: 4.17 B/s (using 751 data points, chi2=0.14)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | could have reported an average CPU frequency of 3706 MHz (30 samples)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | ..............................
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | . Timing measurements:
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | . get job = 0 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,552 | INFO     | . initial setup = 1 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,553 | INFO     | . payload setup = 5 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,553 | INFO     | . stage-in = 0 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,553 | INFO     | . payload execution = 47696 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,553 | INFO     | . stage-out = 1 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,553 | INFO     | . log creation = 0 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,553 | INFO     | ..............................
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | 
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | job summary report
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | --------------------------------------------------
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | PanDA job id: 6895357720
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | task id: 47556137
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | errors: (none)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,601 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | pilot state: finished 
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | transexitcode: 0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | exeerrorcode: 0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | exeerrordiag: 
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | exitcode: 0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | exitmsg: OK
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | cpuconsumptiontime: 187990 s
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | nevents: 1000
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | neventsw: 0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | pid: 1235782
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | pgrp: 1235782
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | corecount: 4
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | event service: False
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | sizes: {0: 2284309, 2: 2284571, 11: 2284599, 47705: 2332773, 47707: 2341823, 47713: 2342013}
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | --------------------------------------------------
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | 
[2025-11-26 04:10:13] 2025-11-26 03:09:13,602 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,611 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | job 6895357720 has completed (purged errors)
[2025-11-26 04:10:13] 2025-11-26 03:09:13,612 | INFO     | overall cleanup function is called
[2025-11-26 04:10:13] 2025-11-26 03:09:14,621 | INFO     | --- collectZombieJob: --- 10, [1235782]
[2025-11-26 04:10:13] 2025-11-26 03:09:14,622 | INFO     | zombie collector waiting for pid 1235782
[2025-11-26 04:10:13] 2025-11-26 03:09:14,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:10:13] 2025-11-26 03:09:14,622 | INFO     | collected zombie processes
[2025-11-26 04:10:13] 2025-11-26 03:09:14,622 | INFO     | will attempt to kill all subprocesses of pid=1235782
[2025-11-26 04:10:13] 2025-11-26 03:09:14,662 | INFO     | process IDs to be killed: [1235782] (in reverse order)
[2025-11-26 04:10:13] 2025-11-26 03:09:14,680 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:10:13] 2025-11-26 03:09:14,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:10:13] 2025-11-26 03:09:14,682 | INFO     | did not find any defunct processes belonging to 1235782
[2025-11-26 04:10:13] 2025-11-26 03:09:14,683 | INFO     | did not find any defunct processes belonging to 1235782
[2025-11-26 04:10:13] 2025-11-26 03:09:14,684 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:10:13] 2025-11-26 03:09:14,684 | INFO     | ready for new job
[2025-11-26 04:10:13] 2025-11-26 03:09:14,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:10:13] 2025-11-26 03:09:14,685 | INFO     | ***************************************
[2025-11-26 04:10:13] 2025-11-26 03:09:14,685 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:10:13] 2025-11-26 03:09:14,685 | INFO     | ***************************************
[2025-11-26 04:10:13] 2025-11-26 03:09:14,685 | INFO     | 
[2025-11-26 04:10:13] 2025-11-26 03:09:14,686 | INFO     | architecture information:
[2025-11-26 04:10:13] 2025-11-26 03:09:14,686 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:10:13] 2025-11-26 03:09:14,717 | INFO     | cat /etc/os-release:
[2025-11-26 04:10:13] NAME="CentOS Linux"
[2025-11-26 04:10:13] VERSION="7 (Core)"
[2025-11-26 04:10:13] ID="centos"
[2025-11-26 04:10:13] ID_LIKE="rhel fedora"
[2025-11-26 04:10:13] VERSION_ID="7"
[2025-11-26 04:10:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:10:13] ANSI_COLOR="0;31"
[2025-11-26 04:10:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:10:13] HOME_URL="https://www.centos.org/"
[2025-11-26 04:10:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:10:13] 
[2025-11-26 04:10:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:10:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:10:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:10:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:10:13] 
[2025-11-26 04:10:13] 2025-11-26 03:09:14,717 | INFO     | ***************************************
[2025-11-26 04:10:13] 2025-11-26 03:09:15,220 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-26 04:10:13] 2025-11-26 03:09:15,227 | INFO     | sufficient remaining disk space (330544709632 B)
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | INFO     | update_server=False
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:10:13] 2025-11-26 03:09:15,228 | INFO     | aborting loop
[2025-11-26 04:10:13] 2025-11-26 03:09:15,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:10:13] 2025-11-26 03:09:15,396 | INFO     | all data control threads have been joined
[2025-11-26 04:10:13] 2025-11-26 03:09:15,690 | INFO     | all payload control threads have been joined
[2025-11-26 04:10:13] 2025-11-26 03:09:16,233 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,233 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,234 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,401 | INFO     | [data] control thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,671 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,672 | INFO     | [job] validate thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,695 | INFO     | [payload] control thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,754 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:16,810 | INFO     | all job control threads have been joined
[2025-11-26 04:10:13] 2025-11-26 03:09:17,205 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:17,252 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:17,372 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:17,449 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:17,470 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:17,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:17,815 | INFO     | [job] control thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:18,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:10:13] 2025-11-26 03:09:22,530 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:10:13] 2025-11-26 03:09:45,454 | INFO     | PID=1228597 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:10:13] 2025-11-26 03:09:45,454 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:10:13] 2025-11-26 03:09:45,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:10:13] 2025-11-26 03:09:45,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:10:13] 2025-11-26 03:10:06,548 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:10:13] 2025-11-26 03:10:07,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510910490432)>', '<ExcThread(monitor, started 140510366779136)>']
[2025-11-26 04:10:13] 2025-11-26 03:10:08,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:10:13] 2025-11-26 03:10:08,557 | INFO     | [monitor] control thread has ended
[2025-11-26 04:10:13] 2025-11-26 03:10:12,945 | INFO     | all workflow threads have been joined
[2025-11-26 04:10:13] 2025-11-26 03:10:12,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:10:13] 2025-11-26 03:10:12,946 | INFO     | traces error code: 0
[2025-11-26 04:10:13] 2025-11-26 03:10:12,946 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:10:13] 2025-11-26 03:10:13,158 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:10:13] 2025-11-26 03:10:13,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:10:13] 2025-11-26 03:10:13,160 [wrapper] pilotpid: 1228597
[2025-11-26 04:10:13] 2025-11-26 03:10:13,161 [wrapper] Pilot exit status: 0
[2025-11-26 04:10:13] 2025-11-26 03:10:13,226 [wrapper] pandaids: 6895357720
[2025-11-26 04:10:13] 2025-11-26 03:10:13,238 [wrapper] cleanup supervisor_pilot 1393882 1228598
[2025-11-26 04:10:13] 2025-11-26 03:10:13,240 [wrapper] Test setup, not cleaning
[2025-11-26 04:10:13] 2025-11-26 03:10:13,241 [wrapper] apfmon messages muted
[2025-11-26 04:10:13] 2025-11-26 03:10:13,242 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:10:13] 2025-11-26 03:10:13,243 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:10:13]  *** Error codes and diagnostics ***
[2025-11-26 04:10:13]     "exeErrorCode": 0,
[2025-11-26 04:10:13]     "exeErrorDiag": "",
[2025-11-26 04:10:13]     "pilotErrorCode": 0,
[2025-11-26 04:10:13]     "pilotErrorDiag": "",
[2025-11-26 04:10:13]  *** Listing of results directory ***
[2025-11-26 04:10:13] total 1311108
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc    576529 Nov 23 12:59 pilot3.tar.gz
[2025-11-26 04:10:13] -rwx------ 1 boinc boinc     36292 Nov 23 13:05 runpilot2-wrapper.sh
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc      5112 Nov 23 13:05 queuedata.json
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc       100 Nov 25 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:10:13] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 14:53 run_atlas
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc       105 Nov 25 14:53 job.xml
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc      6314 Nov 25 14:53 init_data.xml
[2025-11-26 04:10:13] -rw-r--r-- 2 boinc boinc 408959829 Nov 25 14:53 EVNT.47483658._000725.pool.root.1
[2025-11-26 04:10:13] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:53 start_atlas.sh
[2025-11-26 04:10:13] drwxrwx--x 2 boinc boinc        68 Nov 25 14:53 shared
[2025-11-26 04:10:13] -rw-r--r-- 2 boinc boinc    590093 Nov 25 14:53 input.tar.gz
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc         0 Nov 25 14:53 boinc_lockfile
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc      2783 Nov 25 14:53 pandaJob.out
[2025-11-26 04:10:13] -rw------- 1 boinc boinc    991909 Nov 25 14:53 agis_schedconf.cvmfs.json
[2025-11-26 04:10:13] drwx------ 5 boinc boinc      4096 Nov 25 14:53 pilot3
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc       532 Nov 26 04:05 boinc_task_state.xml
[2025-11-26 04:10:13] -rw------- 1 boinc boinc 913306794 Nov 26 04:08 HITS.47556137._007201.pool.root.1
[2025-11-26 04:10:13] -rw------- 1 boinc boinc      1039 Nov 26 04:09 memory_monitor_summary.json
[2025-11-26 04:10:13] -rw------- 1 boinc boinc   1516240 Nov 26 04:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:10:13] -rw------- 1 boinc boinc   1519778 Nov 26 04:09 log.47556137._007201.job.log.tgz.1
[2025-11-26 04:10:13] -rw------- 1 boinc boinc        95 Nov 26 04:09 pilot_heartbeat.json
[2025-11-26 04:10:13] -rw------- 1 boinc boinc      8607 Nov 26 04:09 heartbeat.json
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc      8192 Nov 26 04:10 boinc_mmap_file
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc        29 Nov 26 04:10 wrapper_checkpoint.txt
[2025-11-26 04:10:13] -rw------- 1 boinc boinc      4749 Nov 26 04:10 pilotlog.txt
[2025-11-26 04:10:13] -rw------- 1 boinc boinc   6679828 Nov 26 04:10 log.47556137._007201.job.log.1
[2025-11-26 04:10:13] -rw------- 1 boinc boinc       353 Nov 26 04:10 output.list
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc       620 Nov 26 04:10 runtime_log
[2025-11-26 04:10:13] -rw------- 1 boinc boinc   8222720 Nov 26 04:10 result.tar.gz
[2025-11-26 04:10:13] -rw------- 1 boinc boinc       663 Nov 26 04:10 tsyLDmz1Nh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0WIKDm9KkKVn.diag
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc      8817 Nov 26 04:10 runtime_log.err
[2025-11-26 04:10:13] -rw-r--r-- 1 boinc boinc     21480 Nov 26 04:10 stderr.txt
[2025-11-26 04:10:13] HITS file was successfully produced:
[2025-11-26 04:10:13] -rw------- 1 boinc boinc 913306794 Nov 26 04:08 shared/HITS.pool.root.1
[2025-11-26 04:10:13]  *** Contents of shared directory: ***
[2025-11-26 04:10:13] total 1299908
[2025-11-26 04:10:13] -rw-r--r-- 2 boinc boinc 408959829 Nov 25 14:53 ATLAS.root_0
[2025-11-26 04:10:13] -rw-r--r-- 2 boinc boinc     15847 Nov 25 14:53 start_atlas.sh
[2025-11-26 04:10:13] -rw-r--r-- 2 boinc boinc    590093 Nov 25 14:53 input.tar.gz
[2025-11-26 04:10:13] -rw------- 1 boinc boinc 913306794 Nov 26 04:08 HITS.pool.root.1
[2025-11-26 04:10:13] -rw------- 1 boinc boinc   8222720 Nov 26 04:10 result.tar.gz
04:10:14 (1224926): run_atlas exited; CPU time 188151.360255
04:10:14 (1224926): called boinc_finish(0)

</stderr_txt>
]]>

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